RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 HRH4Q9H3N8 390 aa11.69□□□□□ -0.54
PDLIM5-202ENST00000318007 MAP1LC3B2A6NCE7 125 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 GBGT1Q8N5D6 347 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 LINC00482Q8N8I6 264 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 BLNKQ8WV28 456 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 NARS2Q96I59 477 aaKnown RBP11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 MAP1LC3BQ9GZQ8 125 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 PEMTQ9UBM1 199 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 MLXQ9UH92 298 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 A8MWP6 167 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 LGALS9O00182 355 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 H2AFB1P0C5Y9 115 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 TFPI2P48307 235 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 RIPPLY3P57055 190 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 PXDC1Q5TGL8 231 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 NOTCH3Q9UM47 2321 aa11.68□□□□□ -0.54
PDLIM5-202ENST00000318007 CHEK1O14757 476 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 C8orf88P0DMB2 117 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 IL34Q6ZMJ4 242 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 DYNLRB2Q8TF09 96 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 C17orf77Q96MU5 243 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 SMPXQ9UHP9 88 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 DNHD1Q96M86 4753 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 CTXND1A0A1B0GTU2 59 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 M0QZ24 198 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 CSN3P07498 182 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 CD33P20138 364 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 WFDC3Q8IUB2 231 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 ZNF503Q96F45 646 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 FAM167A-AS1Q96KT0 104 aa11.67□□□□□ -0.54
PDLIM5-202ENST00000318007 SEC14L6B5MCN3 397 aa11.66□□□□□ -0.54
PDLIM5-202ENST00000318007 UBE2G2P60604 165 aa11.66□□□□□ -0.54
PDLIM5-202ENST00000318007 UBE2L3P68036 154 aaKnown RBP11.66□□□□□ -0.54
PDLIM5-202ENST00000318007 CCL20P78556 96 aa11.66□□□□□ -0.54
PDLIM5-202ENST00000318007 IGFL4Q6B9Z1 124 aa11.66□□□□□ -0.54
PDLIM5-202ENST00000318007 SIGLEC15Q6ZMC9 328 aa11.66□□□□□ -0.54
PDLIM5-202ENST00000318007 MRPL32Q9BYC8 188 aaKnown RBP11.66□□□□□ -0.54
PDLIM5-202ENST00000318007 TECRQ9NZ01 308 aaKnown RBP11.66□□□□□ -0.54
PDLIM5-202ENST00000318007 CMYA5Q8N3K9 4069 aa11.65□□□□□ -0.54
PDLIM5-202ENST00000318007 K7EMT4 169 aa11.65□□□□□ -0.54
PDLIM5-202ENST00000318007 RAB5CP51148 216 aa11.65□□□□□ -0.54
PDLIM5-202ENST00000318007 KHDC3LQ587J8 217 aa11.65□□□□□ -0.54
PDLIM5-202ENST00000318007 TCF24Q7RTU0 167 aa11.65□□□□□ -0.54
PDLIM5-202ENST00000318007 STXBP6Q8NFX7 210 aa11.65□□□□□ -0.54
PDLIM5-202ENST00000318007 PAXXQ9BUH6 204 aa11.65□□□□□ -0.54
PDLIM5-202ENST00000318007 OR51M1Q9H341 326 aa11.65□□□□□ -0.54
PDLIM5-202ENST00000318007 H3BQ15 152 aa11.65□□□□□ -0.55
PDLIM5-202ENST00000318007 STAG3L2P0CL84 134 aa11.65□□□□□ -0.55
PDLIM5-202ENST00000318007 STAG3L3P0CL85 134 aa11.65□□□□□ -0.55
PDLIM5-202ENST00000318007 GP9P14770 177 aa11.65□□□□□ -0.55
PDLIM5-202ENST00000318007 TAS2R45P59539 299 aa11.65□□□□□ -0.55
PDLIM5-202ENST00000318007 BPIFA4PQ86YQ2 179 aa11.65□□□□□ -0.55
PDLIM5-202ENST00000318007 SMAD5-AS1Q9Y6J3 95 aa11.65□□□□□ -0.55
PDLIM5-202ENST00000318007 A0A1W2PS18 150 aa11.64□□□□□ -0.55
PDLIM5-202ENST00000318007 IZUMO1RA6ND01 250 aa11.64□□□□□ -0.55
PDLIM5-202ENST00000318007 ZNF785A8K8V0 405 aa11.64□□□□□ -0.55
PDLIM5-202ENST00000318007 NMBP08949 121 aa11.64□□□□□ -0.55
PDLIM5-202ENST00000318007 IGLL1P15814 213 aa11.64□□□□□ -0.55
PDLIM5-202ENST00000318007 CD300EQ496F6 205 aaPredicted RBP11.64□□□□□ -0.55
PDLIM5-202ENST00000318007 C16orf54Q6UWD8 224 aa11.64□□□□□ -0.55
PDLIM5-202ENST00000318007 GLMPQ8WWB7 406 aa11.64□□□□□ -0.55
PDLIM5-202ENST00000318007 GRAMD2BQ96HH9 432 aa11.64□□□□□ -0.55
PDLIM5-202ENST00000318007 U3KQE9 123 aa11.64□□□□□ -0.55
PDLIM5-202ENST00000318007 SLC17A3O00476 420 aa11.63□□□□□ -0.55
PDLIM5-202ENST00000318007 ZNF767PQ75MW2 155 aa11.63□□□□□ -0.55
PDLIM5-202ENST00000318007 PFDN2Q9UHV9 154 aa11.63□□□□□ -0.55
PDLIM5-202ENST00000318007 CXorf1O96002 111 aa11.63□□□□□ -0.55
PDLIM5-202ENST00000318007 ATF4P18848 351 aaPredicted RBP11.63□□□□□ -0.55
PDLIM5-202ENST00000318007 RAB14P61106 215 aa11.63□□□□□ -0.55
PDLIM5-202ENST00000318007 DPPA3Q6W0C5 159 aa11.63□□□□□ -0.55
PDLIM5-202ENST00000318007 S100A7AQ86SG5 101 aa11.63□□□□□ -0.55
PDLIM5-202ENST00000318007 TMEM61Q8N0U2 210 aa11.63□□□□□ -0.55
PDLIM5-202ENST00000318007 ZNF586Q9NXT0 402 aa11.63□□□□□ -0.55
PDLIM5-202ENST00000318007 GNG13Q9P2W3 67 aa11.63□□□□□ -0.55
PDLIM5-202ENST00000318007 RPL7P18124 248 aaKnown RBP11.62□□□□□ -0.55
PDLIM5-202ENST00000318007 GCHFRP30047 84 aa11.62□□□□□ -0.55
PDLIM5-202ENST00000318007 FXYD5Q96DB9 178 aa11.62□□□□□ -0.55
PDLIM5-202ENST00000318007 MRPS12O15235 138 aaKnown RBP11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 GALR1P47211 349 aa11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 RANP62826 216 aaKnown RBP11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 RBPMS2Q6ZRY4 209 aaKnown RBP11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 LRRC20Q8TCA0 184 aa11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 HLA-DMBP28068 263 aa11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 BLOC1S1P78537 153 aa11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 GUCA2BQ16661 112 aa11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 HAGHQ16775 308 aa11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 PQLC2Q6ZP29 291 aa11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 EXOC3-AS1Q8N2X6 119 aa11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 RNF182Q8N6D2 247 aa11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 TMEM231Q9H6L2 316 aa11.61□□□□□ -0.55
PDLIM5-202ENST00000318007 NBEAP1P0C6P0 100 aa11.6□□□□□ -0.55
PDLIM5-202ENST00000318007 IGLC2P0DOY2 106 aa11.6□□□□□ -0.55
PDLIM5-202ENST00000318007 DEFB114Q30KQ6 69 aa11.6□□□□□ -0.55
PDLIM5-202ENST00000318007 OXLD1Q5BKU9 147 aa11.6□□□□□ -0.55
PDLIM5-202ENST00000318007 MBD3L1Q8WWY6 194 aa11.6□□□□□ -0.55
PDLIM5-202ENST00000318007 MARC2Q969Z3 335 aa11.6□□□□□ -0.55
PDLIM5-202ENST00000318007 MS4A6AQ9H2W1 248 aa11.6□□□□□ -0.55
PDLIM5-202ENST00000318007 RPH3ALQ9UNE2 315 aa11.6□□□□□ -0.55
PDLIM5-202ENST00000318007 DNASE2O00115 360 aaPredicted RBP11.59□□□□□ -0.55
PDLIM5-202ENST00000318007 S100A7P31151 101 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms