RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 RHOGP84095 191 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 FOXL1Q12952 345 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 OR4F17Q8NGA8 305 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 HIF1ANQ9NWT6 349 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 IGLV11-55A0A075B6I3 123 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 ADMP35318 185 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 CLEC19AQ6UXS0 136 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 BPIFA4PQ86YQ2 179 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 C10orf105Q8TEF2 133 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 AJUBAQ96IF1 538 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 NAT8BQ9UHF3 227 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 CDC42EP3Q9UKI2 254 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 TBL2Q9Y4P3 447 aaKnown RBP9.01□□□□□ -0.97
CUX1-202ENST00000292538 FABP1P07148 127 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 CAMPP49913 170 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 ACTL10Q5JWF8 245 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 BTF3L4Q96K17 158 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 IGF2BP2-AS1Q96M15 143 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 PACRGQ96M98 296 aaPredicted RBP9.01□□□□□ -0.97
CUX1-202ENST00000292538 PITPNC1Q9UKF7 332 aa9.01□□□□□ -0.97
CUX1-202ENST00000292538 SONP18583 2426 aaKnown RBP9□□□□□ -0.97
CUX1-202ENST00000292538 CREBBPQ92793 2442 aa9□□□□□ -0.97
CUX1-202ENST00000292538 OOSP1A8MZH6 123 aa9□□□□□ -0.97
CUX1-202ENST00000292538 PHOX2AO14813 284 aa9□□□□□ -0.97
CUX1-202ENST00000292538 TGOLN2O43493 480 aa9□□□□□ -0.97
CUX1-202ENST00000292538 CIARTQ8N365 385 aaPredicted RBP9□□□□□ -0.97
CUX1-202ENST00000292538 Q8N6K4 173 aa9□□□□□ -0.97
CUX1-202ENST00000292538 MRPL18Q9H0U6 180 aaKnown RBP9□□□□□ -0.97
CUX1-202ENST00000292538 GATCO43716 136 aaKnown RBP9□□□□□ -0.97
CUX1-202ENST00000292538 PYY3Q5JQD4 70 aa9□□□□□ -0.97
CUX1-202ENST00000292538 PVRIGQ6DKI7 326 aa9□□□□□ -0.97
CUX1-202ENST00000292538 TMEM256Q8N2U0 113 aa9□□□□□ -0.97
CUX1-202ENST00000292538 TTC9CQ8N5M4 171 aa9□□□□□ -0.97
CUX1-202ENST00000292538 NUDT10Q8NFP7 164 aa9□□□□□ -0.97
CUX1-202ENST00000292538 NUDT11Q96G61 164 aa9□□□□□ -0.97
CUX1-202ENST00000292538 TPPP3Q9BW30 176 aa9□□□□□ -0.97
CUX1-202ENST00000292538 IGHV1-69DA0A0B4J2H0 117 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 NPIPB5A8MRT5 1133 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 J3KRW8 73 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 GCGP01275 180 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 IGHV1-69P01742 117 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 COX6B1P14854 86 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 RELQ04864 619 aaPredicted RBP8.99□□□□□ -0.97
CUX1-202ENST00000292538 LCNL1Q6ZST4 164 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 DAZAP1Q96EP5 407 aaKnown RBP8.99□□□□□ -0.97
CUX1-202ENST00000292538 NOL4LQ96MY1 436 aaPredicted RBP8.99□□□□□ -0.97
CUX1-202ENST00000292538 HIST1H2BLQ99880 126 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 TCEAL7Q9BRU2 100 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 MRPL27Q9P0M9 148 aaKnown RBP8.99□□□□□ -0.97
CUX1-202ENST00000292538 ARL2-SNX15V9GYD0 113 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 H3BUX3 64 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 TOMM40O96008 361 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 TCRAP04437 139 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 HIST1H1EP10412 219 aaKnown RBP8.99□□□□□ -0.97
CUX1-202ENST00000292538 TCF24Q7RTU0 167 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 C5orf17Q8NAS9 161 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 SRSF8Q9BRL6 282 aaKnown RBP8.99□□□□□ -0.97
CUX1-202ENST00000292538 ATG101Q9BSB4 218 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 SHANK2-AS3Q9BTD1 123 aa8.99□□□□□ -0.97
CUX1-202ENST00000292538 HLA-DRB1P01911 266 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 GZMBP10144 247 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 LINC00322Q6ZN03 302 aaPredicted RBP8.98□□□□□ -0.97
CUX1-202ENST00000292538 ZNF843Q8N446 348 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 CHD6Q8TD26 2715 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 F8W735 103 aaPredicted RBP8.98□□□□□ -0.97
CUX1-202ENST00000292538 CTSGP08311 255 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 SMIM6P0DI80 62 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 CD33P20138 364 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 TAS2R60P59551 318 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 PAX8Q06710 450 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 TMEM68Q96MH6 324 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 AVPP01185 164 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 MSMBP08118 114 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 EBI3Q14213 229 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 BAGE3Q86Y29 109 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 TMEM183AQ8IXX5 376 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 GPR82Q96P67 336 aa8.98□□□□□ -0.97
CUX1-202ENST00000292538 SSBP4Q9BWG4 385 aaPredicted RBP8.98□□□□□ -0.97
CUX1-202ENST00000292538 NUPR1O60356 82 aa8.97□□□□□ -0.97
CUX1-202ENST00000292538 NDUFS6O75380 124 aaKnown RBP8.97□□□□□ -0.97
CUX1-202ENST00000292538 IGHV3-11P01762 117 aa8.97□□□□□ -0.97
CUX1-202ENST00000292538 OSTCQ9NRP0 149 aa8.97□□□□□ -0.97
CUX1-202ENST00000292538 LY96Q9Y6Y9 160 aa8.97□□□□□ -0.97
CUX1-202ENST00000292538 TRBV19A0A075B6N1 114 aa8.97□□□□□ -0.97
CUX1-202ENST00000292538 TRAV30A0A087WSZ9 112 aa8.97□□□□□ -0.97
CUX1-202ENST00000292538 HIGD1CA8MV81 97 aa8.97□□□□□ -0.97
CUX1-202ENST00000292538 TGFAP01135 160 aa8.97□□□□□ -0.97
CUX1-202ENST00000292538 PLP1P60201 277 aa8.97□□□□□ -0.97
CUX1-202ENST00000292538 BLCAPP62952 87 aa8.97□□□□□ -0.97
CUX1-202ENST00000292538 TMEM183BQ1AE95 376 aa8.97□□□□□ -0.97
CUX1-202ENST00000292538 ZNF331Q9NQX6 463 aaPredicted RBP8.97□□□□□ -0.97
CUX1-202ENST00000292538 CUBNO60494 3623 aa8.96□□□□□ -0.97
CUX1-202ENST00000292538 TMSB15BA0A087X1C1 80 aa8.96□□□□□ -0.97
CUX1-202ENST00000292538 F2Z2F3 143 aa8.96□□□□□ -0.97
CUX1-202ENST00000292538 H3BRN7 92 aa8.96□□□□□ -0.97
CUX1-202ENST00000292538 AMBPP02760 352 aa8.96□□□□□ -0.97
CUX1-202ENST00000292538 TYMSP04818 313 aa8.96□□□□□ -0.97
CUX1-202ENST00000292538 CRISP2P16562 243 aa8.96□□□□□ -0.97
CUX1-202ENST00000292538 HLA-DMBP28068 263 aa8.96□□□□□ -0.97
CUX1-202ENST00000292538 MYCNOSP40205 109 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms