RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 IGLV11-55A0A075B6I3 123 aa15.79■□□□□ 0.12
VPS53-201ENST00000291074 ZNF562Q6V9R5 426 aa15.79■□□□□ 0.12
VPS53-201ENST00000291074 Q86TA4 180 aa15.79■□□□□ 0.12
VPS53-201ENST00000291074 SIRPDQ9H106 197 aa15.79■□□□□ 0.12
VPS53-201ENST00000291074 GNG7O60262 68 aa15.78■□□□□ 0.12
VPS53-201ENST00000291074 CCDC144NLQ6NUI1 221 aa15.78■□□□□ 0.12
VPS53-201ENST00000291074 CIARTQ8N365 385 aaPredicted RBP15.78■□□□□ 0.12
VPS53-201ENST00000291074 Q8N6K4 173 aa15.78■□□□□ 0.12
VPS53-201ENST00000291074 TBX15Q96SF7 602 aa15.78■□□□□ 0.12
VPS53-201ENST00000291074 RPP21Q9H633 154 aaKnown RBP15.78■□□□□ 0.12
VPS53-201ENST00000291074 BRS3P32247 399 aa15.78■□□□□ 0.12
VPS53-201ENST00000291074 OR10J3Q5JRS4 329 aa15.78■□□□□ 0.12
VPS53-201ENST00000291074 C1orf122Q6ZSJ8 110 aa15.78■□□□□ 0.12
VPS53-201ENST00000291074 WIPF2Q8TF74 440 aaPredicted RBP15.78■□□□□ 0.12
VPS53-201ENST00000291074 NDUFAF3Q9BU61 184 aa15.78■□□□□ 0.12
VPS53-201ENST00000291074 F8W735 103 aaPredicted RBP15.77■□□□□ 0.12
VPS53-201ENST00000291074 IGLV2-11P01706 119 aa15.77■□□□□ 0.12
VPS53-201ENST00000291074 TMEM11P17152 192 aa15.77■□□□□ 0.12
VPS53-201ENST00000291074 FCGR2BP31994 310 aaPredicted RBP15.77■□□□□ 0.12
VPS53-201ENST00000291074 TOMM20LQ6UXN7 152 aa15.77■□□□□ 0.12
VPS53-201ENST00000291074 PRNTQ86SH4 94 aa15.77■□□□□ 0.12
VPS53-201ENST00000291074 ITLN2Q8WWU7 325 aaPredicted RBP15.77■□□□□ 0.12
VPS53-201ENST00000291074 SMIM12Q96EX1 92 aa15.77■□□□□ 0.12
VPS53-201ENST00000291074 NOL4LQ96MY1 436 aaPredicted RBP15.77■□□□□ 0.12
VPS53-201ENST00000291074 CHRDL1Q9BU40 450 aa15.77■□□□□ 0.12
VPS53-201ENST00000291074 TRBV19A0A075B6N1 114 aa15.77■□□□□ 0.11
VPS53-201ENST00000291074 NPIPB5A8MRT5 1133 aa15.77■□□□□ 0.11
VPS53-201ENST00000291074 PMCHP20382 165 aa15.77■□□□□ 0.11
VPS53-201ENST00000291074 FAM120AOSQ5T036 256 aa15.77■□□□□ 0.11
VPS53-201ENST00000291074 BPIFA4PQ86YQ2 179 aa15.77■□□□□ 0.11
VPS53-201ENST00000291074 PKD1L2Q7Z442 2459 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 C19orf71A6NCJ1 209 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 IGLC2P0DOY2 106 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 GTSF1Q8WW33 167 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 PRSS22Q9GZN4 317 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 PRORYQ9H606 182 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 FBXL7Q9UJT9 491 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 A0A1W2PS18 150 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 P01737 135 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 HLA-DRB1P01911 266 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 GPX1P07203 203 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 Q56UQ5 140 aa15.76■□□□□ 0.11
VPS53-201ENST00000291074 OR2J3O76001 311 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 NDUFB8O95169 186 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 GNLYP22749 145 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 AMTP48728 403 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 TDRG1Q3Y452 100 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 SIGLECL1Q8N7X8 197 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 OR4F17Q8NGA8 305 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 KCNS1Q96KK3 526 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 BPESC1Q9GZL8 116 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 TBL2Q9Y4P3 447 aaKnown RBP15.75■□□□□ 0.11
VPS53-201ENST00000291074 WI2-2373I1.2A0A1W2PRP0 233 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 SFTPCP11686 197 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 LBHQ53QV2 105 aaPredicted RBP15.75■□□□□ 0.11
VPS53-201ENST00000291074 MINOS1Q5TGZ0 78 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 SIGLEC15Q6ZMC9 328 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 C18orf32Q8TCD1 76 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 SNHG12Q9BXW3 62 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 MINOS1-NBL1R4GNA1 71 aa15.75■□□□□ 0.11
VPS53-201ENST00000291074 MFAP4P55083 255 aa15.74■□□□□ 0.11
VPS53-201ENST00000291074 RASL11AQ6T310 242 aa15.74■□□□□ 0.11
VPS53-201ENST00000291074 ZNF492Q9P255 531 aa15.74■□□□□ 0.11
VPS53-201ENST00000291074 IGHV2-70DA0A0C4DH43 119 aa15.74■□□□□ 0.11
VPS53-201ENST00000291074 MRPS12O15235 138 aaKnown RBP15.74■□□□□ 0.11
VPS53-201ENST00000291074 EGR2P11161 476 aaPredicted RBP15.74■□□□□ 0.11
VPS53-201ENST00000291074 EFNA4P52798 201 aa15.74■□□□□ 0.11
VPS53-201ENST00000291074 FAM19A2Q8N3H0 131 aa15.74■□□□□ 0.11
VPS53-201ENST00000291074 TTC9CQ8N5M4 171 aa15.74■□□□□ 0.11
VPS53-201ENST00000291074 PGLYRP4Q96LB8 373 aa15.74■□□□□ 0.11
VPS53-201ENST00000291074 IGHV7-81A0A0B4J1V7 117 aa15.73■□□□□ 0.11
VPS53-201ENST00000291074 A0A1B0GXF2 115 aa15.73■□□□□ 0.11
VPS53-201ENST00000291074 RELQ04864 619 aaPredicted RBP15.73■□□□□ 0.11
VPS53-201ENST00000291074 EBI3Q14213 229 aa15.73■□□□□ 0.11
VPS53-201ENST00000291074 OR2D3Q8NGH3 330 aa15.73■□□□□ 0.11
VPS53-201ENST00000291074 VN1R17PQ8TDU5 208 aa15.73■□□□□ 0.11
VPS53-201ENST00000291074 C21orf62Q9NYP8 219 aa15.73■□□□□ 0.11
VPS53-201ENST00000291074 COL12A1Q99715 3063 aa15.73■□□□□ 0.11
VPS53-201ENST00000291074 OOSP1A8MZH6 123 aa15.73■□□□□ 0.11
VPS53-201ENST00000291074 M0R3E3 92 aa15.73■□□□□ 0.11
VPS53-201ENST00000291074 DAZAP1Q96EP5 407 aaKnown RBP15.73■□□□□ 0.11
VPS53-201ENST00000291074 LPAR2Q9HBW0 351 aa15.73■□□□□ 0.11
VPS53-201ENST00000291074 ZFHX3Q15911 3703 aa15.73■□□□□ 0.11
VPS53-201ENST00000291074 OR2T8A6NH00 312 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 ZNF25P17030 456 aaPredicted RBP15.72■□□□□ 0.11
VPS53-201ENST00000291074 KRTDAPP60985 99 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 Q8N9W7 124 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 AJUBAQ96IF1 538 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 NRN1Q9NPD7 142 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 CELSR1Q9NYQ6 3014 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 ZNF785A8K8V0 405 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 A8MWL6 223 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 C1orf194Q5T5A4 169 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 ZNF414Q96IQ9 312 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 ABCA2Q9BZC7 2435 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 VPS13CQ709C8 3753 aa15.72■□□□□ 0.11
VPS53-201ENST00000291074 COL8A1P27658 744 aa15.71■□□□□ 0.11
VPS53-201ENST00000291074 LMO4P61968 165 aa15.71■□□□□ 0.11
VPS53-201ENST00000291074 ZC2HC1AQ96GY0 325 aa15.71■□□□□ 0.11
VPS53-201ENST00000291074 IGHV3OR16-8A0A075B7F1 116 aa15.71■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms