RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 TRAV5A0A0B4J249 113 aa9.48□□□□□ -0.89
SS18-202ENST00000269138 FRMD6-AS1P0C7T7 363 aa9.48□□□□□ -0.89
SS18-202ENST00000269138 APRG1Q8IVJ8 170 aa9.48□□□□□ -0.89
SS18-202ENST00000269138 OR1L4Q8NGR5 311 aa9.48□□□□□ -0.89
SS18-202ENST00000269138 PARD6GQ9BYG4 376 aaPredicted RBP9.48□□□□□ -0.89
SS18-202ENST00000269138 TUBA4BQ9H853 241 aa9.48□□□□□ -0.89
SS18-202ENST00000269138 SRD5A3Q9H8P0 318 aa9.48□□□□□ -0.89
SS18-202ENST00000269138 MAP6D1Q9H9H5 199 aa9.48□□□□□ -0.89
SS18-202ENST00000269138 RBMY1BA6NDE4 496 aaKnown RBP9.47□□□□□ -0.89
SS18-202ENST00000269138 RBMY1EA6NEQ0 496 aaKnown RBP9.47□□□□□ -0.89
SS18-202ENST00000269138 RBMY1DP0C7P1 496 aaKnown RBP9.47□□□□□ -0.89
SS18-202ENST00000269138 ZNF688P0C7X2 276 aa9.47□□□□□ -0.89
SS18-202ENST00000269138 DEFB131AP59861 70 aa9.47□□□□□ -0.89
SS18-202ENST00000269138 ASCL2Q99929 193 aa9.47□□□□□ -0.89
SS18-202ENST00000269138 MFFQ9GZY8 342 aa9.47□□□□□ -0.89
SS18-202ENST00000269138 A8MZ25 164 aa9.46□□□□□ -0.89
SS18-202ENST00000269138 C17orf112F2Z3M2 114 aa9.46□□□□□ -0.89
SS18-202ENST00000269138 SNRPCP09234 159 aaKnown RBP9.46□□□□□ -0.89
SS18-202ENST00000269138 S100A7P31151 101 aa9.46□□□□□ -0.89
SS18-202ENST00000269138 GALR1P47211 349 aa9.46□□□□□ -0.89
SS18-202ENST00000269138 FFAR4Q5NUL3 377 aa9.46□□□□□ -0.89
SS18-202ENST00000269138 SPATA31B1PQ5VZV4 182 aa9.46□□□□□ -0.89
SS18-202ENST00000269138 RPL7L1Q6DKI1 246 aaKnown RBP9.46□□□□□ -0.89
SS18-202ENST00000269138 HSD17B11Q8NBQ5 300 aa9.46□□□□□ -0.89
SS18-202ENST00000269138 PFDN5Q99471 154 aa9.46□□□□□ -0.89
SS18-202ENST00000269138 HMSDA8MTL9 139 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 SOCS3O14543 225 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 MRPS12O15235 138 aaKnown RBP9.46□□□□□ -0.9
SS18-202ENST00000269138 RPL7P18124 248 aaKnown RBP9.46□□□□□ -0.9
SS18-202ENST00000269138 CXCL2P19875 107 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 CD300CQ08708 224 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 ZNF266Q14584 549 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 S100A7AQ86SG5 101 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 TCTE3Q8IZS6 198 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 GATAD1Q8WUU5 269 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 GPR82Q96P67 336 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 B9D2Q9BPU9 175 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 FAM110AQ9BQ89 295 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 KCNIP2Q9NS61 270 aa9.46□□□□□ -0.9
SS18-202ENST00000269138 ATP6V0CP27449 155 aa9.45□□□□□ -0.9
SS18-202ENST00000269138 CMC4P56277 68 aaPredicted RBP9.45□□□□□ -0.9
SS18-202ENST00000269138 PSMG4Q5JS54 123 aa9.45□□□□□ -0.9
SS18-202ENST00000269138 FAM78BQ5VT40 261 aa9.45□□□□□ -0.9
SS18-202ENST00000269138 IGFL4Q6B9Z1 124 aa9.45□□□□□ -0.9
SS18-202ENST00000269138 LINC00322Q6ZN03 302 aaPredicted RBP9.45□□□□□ -0.9
SS18-202ENST00000269138 MIR17HGQ75NE6 70 aa9.45□□□□□ -0.9
SS18-202ENST00000269138 SBSPONQ8IVN8 264 aa9.45□□□□□ -0.9
SS18-202ENST00000269138 KCNRGQ8N5I3 272 aa9.45□□□□□ -0.9
SS18-202ENST00000269138 SEPSECSQ9HD40 501 aaKnown RBP9.45□□□□□ -0.9
SS18-202ENST00000269138 CYTL1Q9NRR1 136 aa9.45□□□□□ -0.9
SS18-202ENST00000269138 KNCNA6PVL3 124 aa9.44□□□□□ -0.9
SS18-202ENST00000269138 H3BTX0 84 aa9.44□□□□□ -0.9
SS18-202ENST00000269138 EIF3GO75821 320 aaKnown RBP eCLIP9.44□□□□□ -0.9
SS18-202ENST00000269138 ATF4P18848 351 aaPredicted RBP9.44□□□□□ -0.9
SS18-202ENST00000269138 DEFB1P60022 68 aa9.44□□□□□ -0.9
SS18-202ENST00000269138 AKAP14Q86UN6 197 aa9.44□□□□□ -0.9
SS18-202ENST00000269138 C20orf173Q96LM9 149 aa9.44□□□□□ -0.9
SS18-202ENST00000269138 LINC00052Q96N35 136 aa9.44□□□□□ -0.9
SS18-202ENST00000269138 SH3BGRL3Q9H299 93 aa9.44□□□□□ -0.9
SS18-202ENST00000269138 TIMM9Q9Y5J7 89 aa9.44□□□□□ -0.9
SS18-202ENST00000269138 BORCS7-ASMTA0A0B4J1R7 106 aa9.43□□□□□ -0.9
SS18-202ENST00000269138 TRAV8-2A0A0B4J237 113 aa9.43□□□□□ -0.9
SS18-202ENST00000269138 H3BQ15 152 aa9.43□□□□□ -0.9
SS18-202ENST00000269138 RPL35AP18077 110 aaKnown RBP9.43□□□□□ -0.9
SS18-202ENST00000269138 HAGHQ16775 308 aa9.43□□□□□ -0.9
SS18-202ENST00000269138 BPIFA4PQ86YQ2 179 aa9.43□□□□□ -0.9
SS18-202ENST00000269138 FAM167A-AS1Q96KT0 104 aa9.43□□□□□ -0.9
SS18-202ENST00000269138 C16orf92Q96LL3 132 aa9.43□□□□□ -0.9
SS18-202ENST00000269138 A0A087X0K7 114 aa9.42□□□□□ -0.9
SS18-202ENST00000269138 TAAR5O14804 337 aa9.42□□□□□ -0.9
SS18-202ENST00000269138 ID1P41134 155 aa9.42□□□□□ -0.9
SS18-202ENST00000269138 PSMB3P49720 205 aa9.42□□□□□ -0.9
SS18-202ENST00000269138 RAB2AP61019 212 aa9.42□□□□□ -0.9
SS18-202ENST00000269138 SNRPD3P62318 126 aaKnown RBP9.42□□□□□ -0.9
SS18-202ENST00000269138 ZNF345Q14585 488 aa9.42□□□□□ -0.9
SS18-202ENST00000269138 SLC25A2Q9BXI2 301 aa9.42□□□□□ -0.9
SS18-202ENST00000269138 RNF24Q9Y225 148 aa9.42□□□□□ -0.9
SS18-202ENST00000269138 FUT9Q9Y231 359 aa9.42□□□□□ -0.9
SS18-202ENST00000269138 LOC102724200A0A096LPH7 203 aaPredicted RBP9.41□□□□□ -0.9
SS18-202ENST00000269138 A0A0D9SG52 128 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 ISLRO14498 428 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 C1QBP02746 253 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 IGLC2P0DOY2 106 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 PYYP10082 97 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 PRB4P10163 310 aaPredicted RBP9.41□□□□□ -0.9
SS18-202ENST00000269138 HLA-DMBP28068 263 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 MEOX2P50222 304 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 TMUB2Q71RG4 321 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 RNF182Q8N6D2 247 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 ARPC5LQ9BPX5 153 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 PSMG3Q9BT73 122 aaPredicted RBP9.41□□□□□ -0.9
SS18-202ENST00000269138 ZNF586Q9NXT0 402 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 SLC17A3O00476 420 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 JTBO76095 146 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 M6PRP20645 277 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 ACOT6Q3I5F7 207 aaPredicted RBP9.41□□□□□ -0.9
SS18-202ENST00000269138 LGALSLQ3ZCW2 172 aaPredicted RBP9.41□□□□□ -0.9
SS18-202ENST00000269138 ACTL10Q5JWF8 245 aa9.41□□□□□ -0.9
SS18-202ENST00000269138 OR2G3Q8NGZ4 309 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms