RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 AZU1P20160 251 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 C19orf24Q9BVV8 132 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 IGHV1-18A0A0C4DH31 117 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 CSN1S1P47710 185 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 OR1L8Q8NGR8 309 aa11.51□□□□□ -0.57
SDC1-201ENST00000254351 CIDEAO60543 219 aa11.5□□□□□ -0.57
SDC1-201ENST00000254351 FCGR2BP31994 310 aaPredicted RBP11.5□□□□□ -0.57
SDC1-201ENST00000254351 CCL8P80075 99 aa11.5□□□□□ -0.57
SDC1-201ENST00000254351 FAM162BQ5T6X4 162 aa11.5□□□□□ -0.57
SDC1-201ENST00000254351 UFSP1Q6NVU6 142 aa11.5□□□□□ -0.57
SDC1-201ENST00000254351 AMN1Q8IY45 258 aa11.5□□□□□ -0.57
SDC1-201ENST00000254351 MS4A6AQ9H2W1 248 aa11.5□□□□□ -0.57
SDC1-201ENST00000254351 DKK2Q9UBU2 259 aa11.5□□□□□ -0.57
SDC1-201ENST00000254351 RPUSD1Q9UJJ7 312 aaKnown RBP11.5□□□□□ -0.57
SDC1-201ENST00000254351 Q6ZT83 130 aa11.5□□□□□ -0.57
SDC1-201ENST00000254351 LGALS7P47929 136 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 SEC11AP67812 179 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 PIP4P2Q8N4L2 257 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 A0A1B0GUT8 65 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 NKX2-8O15522 239 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 LTAP01374 205 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 C9orf106Q8NAJ2 232 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 OR10X1Q8NGY0 326 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 VSTM2AQ8TAG5 236 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 MLST8Q9BVC4 326 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 NDUFA4L2Q9NRX3 87 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 M0R3E3 92 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 IGKV3-15P01624 115 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 PSG3Q16557 428 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 DHRS13Q6UX07 377 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 ZNF714Q96N38 554 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 NPFFR1Q9GZQ6 430 aa11.49□□□□□ -0.57
SDC1-201ENST00000254351 DSCAML1Q8TD84 2053 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 FGF6P10767 208 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 ZNF788Q6ZQV5 615 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 ZGRF1Q86YA3 2104 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 NDFIP1Q9BT67 221 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 PRSS22Q9GZN4 317 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 INSIG2Q9Y5U4 225 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 ASH1LQ9NR48 2969 aaKnown RBP11.48□□□□□ -0.57
SDC1-201ENST00000254351 A0A1W2PPM0 123 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 RBP4P02753 201 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 FABP2P12104 132 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 FCER1GP30273 86 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 SAMD5Q5TGI4 173 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 AMTNQ6UX39 209 aa11.48□□□□□ -0.57
SDC1-201ENST00000254351 A0A1W2PNU3 283 aaPredicted RBP11.47□□□□□ -0.57
SDC1-201ENST00000254351 C19orf71A6NCJ1 209 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 CGB1A6NKQ9 187 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 H3BRM9 83 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 J3QW42 95 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 TNFRSF1AP19438 455 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 SFTA2Q6UW10 78 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 SH2D6Q7Z4S9 175 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 FAM222BQ8WU58 562 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 IGFBPL1Q8WX77 278 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 KIR2DL2P43627 348 aaPredicted RBP11.47□□□□□ -0.57
SDC1-201ENST00000254351 FXYD2P54710 66 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 RPS20P60866 119 aaKnown RBP11.47□□□□□ -0.57
SDC1-201ENST00000254351 ZADH2Q8N4Q0 377 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 NHP2Q9NX24 153 aaKnown RBP11.47□□□□□ -0.57
SDC1-201ENST00000254351 SIGLEC8Q9NYZ4 499 aa11.47□□□□□ -0.57
SDC1-201ENST00000254351 TSSC4Q9Y5U2 329 aaPredicted RBP11.47□□□□□ -0.57
SDC1-201ENST00000254351 A0A1W2PPI3 338 aa11.46□□□□□ -0.57
SDC1-201ENST00000254351 FSTL3O95633 263 aa11.46□□□□□ -0.57
SDC1-201ENST00000254351 CNTFRP26992 372 aa11.46□□□□□ -0.57
SDC1-201ENST00000254351 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.46□□□□□ -0.57
SDC1-201ENST00000254351 NBL1P41271 181 aa11.46□□□□□ -0.57
SDC1-201ENST00000254351 CCL11P51671 97 aa11.46□□□□□ -0.57
SDC1-201ENST00000254351 Q86TA4 180 aa11.46□□□□□ -0.57
SDC1-201ENST00000254351 BCL6BQ8N143 479 aaPredicted RBP11.46□□□□□ -0.57
SDC1-201ENST00000254351 CACNG8Q8WXS5 425 aa11.46□□□□□ -0.57
SDC1-201ENST00000254351 C8orf49Q96NF6 230 aa11.46□□□□□ -0.57
SDC1-201ENST00000254351 PPIAL4EA0A075B759 164 aa11.46□□□□□ -0.58
SDC1-201ENST00000254351 A0A096LNJ9 63 aa11.46□□□□□ -0.58
SDC1-201ENST00000254351 SMAD7O15105 426 aaKnown RBP11.46□□□□□ -0.58
SDC1-201ENST00000254351 PPIAL4FP0DN26 164 aa11.46□□□□□ -0.58
SDC1-201ENST00000254351 MYCNOSP40205 109 aa11.46□□□□□ -0.58
SDC1-201ENST00000254351 RBPJQ06330 500 aa11.46□□□□□ -0.58
SDC1-201ENST00000254351 ZNF414Q96IQ9 312 aa11.46□□□□□ -0.58
SDC1-201ENST00000254351 LRBAP50851 2863 aa11.46□□□□□ -0.58
SDC1-201ENST00000254351 OTOGLQ3ZCN5 2332 aa11.45□□□□□ -0.58
SDC1-201ENST00000254351 SPAARA0A1B0GVQ0 90 aa11.45□□□□□ -0.58
SDC1-201ENST00000254351 SRSF6Q13247 344 aaKnown RBP11.45□□□□□ -0.58
SDC1-201ENST00000254351 WFDC2Q14508 124 aa11.45□□□□□ -0.58
SDC1-201ENST00000254351 FMC1Q96HJ9 113 aa11.45□□□□□ -0.58
SDC1-201ENST00000254351 CGB3P0DN86 165 aa11.45□□□□□ -0.58
SDC1-201ENST00000254351 CGB7P0DN87 165 aa11.45□□□□□ -0.58
SDC1-201ENST00000254351 IGKV2D-26A0A0A0MRZ7 120 aa11.44□□□□□ -0.58
SDC1-201ENST00000254351 WT1P19544 449 aaPredicted RBP11.44□□□□□ -0.58
SDC1-201ENST00000254351 ADAMTSL5Q6ZMM2 481 aa11.44□□□□□ -0.58
SDC1-201ENST00000254351 OR5AN1Q8NGI8 311 aa11.44□□□□□ -0.58
SDC1-201ENST00000254351 PRELID3AQ96N28 172 aa11.44□□□□□ -0.58
SDC1-201ENST00000254351 COL27A1Q8IZC6 1860 aaPredicted RBP11.44□□□□□ -0.58
SDC1-201ENST00000254351 IGHV3OR16-8A0A075B7F1 116 aa11.44□□□□□ -0.58
SDC1-201ENST00000254351 PPIFP30405 207 aaKnown RBP11.44□□□□□ -0.58
SDC1-201ENST00000254351 SUB1P53999 127 aaKnown RBP eCLIP11.44□□□□□ -0.58
SDC1-201ENST00000254351 IGFL4Q6B9Z1 124 aa11.44□□□□□ -0.58
SDC1-201ENST00000254351 GAS8-AS1O95177 125 aa11.44□□□□□ -0.58
SDC1-201ENST00000254351 EVI2AP22794 236 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms