RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 JPT1Q9UK76 154 aa11.86□□□□□ -0.51
PTPRA-201ENST00000216877 TTC32Q5I0X7 151 aa11.85□□□□□ -0.51
PTPRA-201ENST00000216877 GOLT1AQ6ZVE7 132 aa11.85□□□□□ -0.51
PTPRA-201ENST00000216877 PCNX2A6NKB5 2137 aa11.85□□□□□ -0.51
PTPRA-201ENST00000216877 IGKV2D-26A0A0A0MRZ7 120 aa11.85□□□□□ -0.51
PTPRA-201ENST00000216877 Q8IYB0 196 aa11.85□□□□□ -0.51
PTPRA-201ENST00000216877 RND1Q92730 232 aa11.85□□□□□ -0.51
PTPRA-201ENST00000216877 SLC25A2Q9BXI2 301 aa11.85□□□□□ -0.51
PTPRA-201ENST00000216877 PKIBQ9C010 78 aa11.85□□□□□ -0.51
PTPRA-201ENST00000216877 Q6ZUT4 128 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 RPRMLQ8N4K4 120 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 IGLV3-32A0A0A0MS00 114 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.84□□□□□ -0.51
PTPRA-201ENST00000216877 PRTN3P24158 256 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 FOXI1Q12951 378 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 GCSAMQ8N6F7 178 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 COQ2Q96H96 371 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 ERG28Q9UKR5 140 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 NPIPB5A8MRT5 1133 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 OR11H12B2RN74 326 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 SSBP2P81877 361 aaPredicted RBP11.84□□□□□ -0.51
PTPRA-201ENST00000216877 ZC2HC1BQ5TFG8 222 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 WDR86Q86TI4 376 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 TTC9CQ8N5M4 171 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 OR11H1Q8NG94 326 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 OR11H2Q8NH07 326 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 FOXC2Q99958 501 aa11.84□□□□□ -0.51
PTPRA-201ENST00000216877 TRBV25-1A0A075B6N4 114 aa11.83□□□□□ -0.52
PTPRA-201ENST00000216877 PRSS46E5RG02 174 aa11.83□□□□□ -0.52
PTPRA-201ENST00000216877 HBDP02042 147 aa11.83□□□□□ -0.52
PTPRA-201ENST00000216877 CKS2P33552 79 aa11.83□□□□□ -0.52
PTPRA-201ENST00000216877 AMN1Q8IY45 258 aa11.83□□□□□ -0.52
PTPRA-201ENST00000216877 TNRC6BQ9UPQ9 1833 aaKnown RBP11.83□□□□□ -0.52
PTPRA-201ENST00000216877 SCGB1C2P0DMR2 95 aa11.83□□□□□ -0.52
PTPRA-201ENST00000216877 C12orf74Q32Q52 190 aa11.83□□□□□ -0.52
PTPRA-201ENST00000216877 SIGLEC8Q9NYZ4 499 aa11.83□□□□□ -0.52
PTPRA-201ENST00000216877 C15orf61A6NNL5 157 aa11.83□□□□□ -0.52
PTPRA-201ENST00000216877 COLCA1Q6ZS62 124 aa11.83□□□□□ -0.52
PTPRA-201ENST00000216877 PGPEP1Q9NXJ5 209 aa11.83□□□□□ -0.52
PTPRA-201ENST00000216877 NAV3Q8IVL0 2385 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 A0A1W2PR77 199 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 C1orf122Q6ZSJ8 110 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 OR5AN1Q8NGI8 311 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 PROP1O75360 226 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 LGALS9BQ3B8N2 356 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 LGALS9CQ6DKI2 356 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 SSUH2Q9Y2M2 353 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 BSNQ9UPA5 3926 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 PIEZO2Q9H5I5 2752 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 PRRG2O14669 202 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 CEND1Q8N111 149 aa11.82□□□□□ -0.52
PTPRA-201ENST00000216877 A0A1W2PQM1 296 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 TSPAN13O95857 204 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 ADAMTS20P59510 1910 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 MED13LQ71F56 2210 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 TMEM213A2RRL7 107 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 IL4P05112 153 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 RPL32P62910 135 aaKnown RBP11.81□□□□□ -0.52
PTPRA-201ENST00000216877 WDR31Q8NA23 367 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 KIR2DL4Q99706 377 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 SOX21Q9Y651 276 aaPredicted RBP11.81□□□□□ -0.52
PTPRA-201ENST00000216877 IGHV3OR15-7A0A075B7D8 119 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 IGHV5-10-1A0A0J9YXX1 117 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 CCL11P51671 97 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 FAM167A-AS1Q96KT0 104 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 IFI27L2Q9H2X8 130 aa11.81□□□□□ -0.52
PTPRA-201ENST00000216877 ERHP84090 104 aaKnown RBP11.8□□□□□ -0.52
PTPRA-201ENST00000216877 PKDREJQ9NTG1 2253 aa11.8□□□□□ -0.52
PTPRA-201ENST00000216877 GAGE2BQ13066 116 aa11.8□□□□□ -0.52
PTPRA-201ENST00000216877 GAGE2EQ4V326 116 aa11.8□□□□□ -0.52
PTPRA-201ENST00000216877 Q71RC1 249 aaPredicted RBP11.8□□□□□ -0.52
PTPRA-201ENST00000216877 GAGE2DQ9UEU5 116 aa11.8□□□□□ -0.52
PTPRA-201ENST00000216877 E9PLD3 99 aa11.8□□□□□ -0.52
PTPRA-201ENST00000216877 ID1P41134 155 aa11.8□□□□□ -0.52
PTPRA-201ENST00000216877 PEAR1Q5VY43 1037 aaPredicted RBP11.8□□□□□ -0.52
PTPRA-201ENST00000216877 ITLN1Q8WWA0 313 aa11.8□□□□□ -0.52
PTPRA-201ENST00000216877 MRPL32Q9BYC8 188 aaKnown RBP11.8□□□□□ -0.52
PTPRA-201ENST00000216877 NDUFS7O75251 213 aa11.79□□□□□ -0.52
PTPRA-201ENST00000216877 NDUFA3O95167 84 aa11.79□□□□□ -0.52
PTPRA-201ENST00000216877 EXOC3-AS1Q8N2X6 119 aa11.79□□□□□ -0.52
PTPRA-201ENST00000216877 TNFRSF1AP19438 455 aa11.79□□□□□ -0.52
PTPRA-201ENST00000216877 SRSF9Q13242 221 aaKnown RBP eCLIP11.79□□□□□ -0.52
PTPRA-201ENST00000216877 CR1LQ2VPA4 569 aa11.79□□□□□ -0.52
PTPRA-201ENST00000216877 MDP1Q86V88 176 aa11.79□□□□□ -0.52
PTPRA-201ENST00000216877 DEFB108BQ8NET1 73 aa11.79□□□□□ -0.52
PTPRA-201ENST00000216877 C3orf36Q3SXR2 165 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 PMS2CLQ68D20 193 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 Q9H3A6 140 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 PRNDQ9UKY0 176 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 COL27A1Q8IZC6 1860 aaPredicted RBP11.78□□□□□ -0.52
PTPRA-201ENST00000216877 GAGE12JA6NER3 117 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 TIMM8AO60220 97 aaPredicted RBP11.78□□□□□ -0.52
PTPRA-201ENST00000216877 GAGE7O76087 117 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 GAGE12FP0CL80 117 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 GAGE12GP0CL81 117 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 GAGE12IP0CL82 117 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 EVI2AP22794 236 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 LEPP41159 167 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 GAGE4Q13068 117 aa11.78□□□□□ -0.52
PTPRA-201ENST00000216877 DEFB124Q8NES8 71 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms