RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 ALDH1A1P00352 501 aa31.08■■■□□ 2.57
VEGFA-232ENST00000640653 CDC42EP5Q6NZY7 148 aa31.08■■■□□ 2.57
VEGFA-232ENST00000640653 DZIP1Q86YF9 867 aaKnown RBP31.08■■■□□ 2.57
VEGFA-232ENST00000640653 SLF2Q8IX21 1173 aa31.08■■■□□ 2.57
VEGFA-232ENST00000640653 MAP3K9P80192 1104 aa31.07■■■□□ 2.56
VEGFA-232ENST00000640653 ELP3Q9H9T3 547 aa31.07■■■□□ 2.56
VEGFA-232ENST00000640653 CSADQ9Y600 493 aa31.07■■■□□ 2.56
VEGFA-232ENST00000640653 SURF6O75683 361 aaKnown RBP31.06■■■□□ 2.56
VEGFA-232ENST00000640653 DCAF15Q66K64 600 aa31.06■■■□□ 2.56
VEGFA-232ENST00000640653 PPP1R3FQ6ZSY5 799 aaPredicted RBP31.06■■■□□ 2.56
VEGFA-232ENST00000640653 DDX55Q8NHQ9 600 aaKnown RBP eCLIP31.06■■■□□ 2.561e-6■□□□□ 11.1
VEGFA-232ENST00000640653 PANK1Q8TE04 598 aa31.06■■■□□ 2.56
VEGFA-232ENST00000640653 FAM151AQ8WW52 585 aa31.06■■■□□ 2.56
VEGFA-232ENST00000640653 GPR108Q9NPR9 543 aa31.06■■■□□ 2.56
VEGFA-232ENST00000640653 USP40Q9NVE5 1235 aa31.06■■■□□ 2.56
VEGFA-232ENST00000640653 OPTNQ96CV9 577 aa31.05■■■□□ 2.56
VEGFA-232ENST00000640653 CFHR5Q9BXR6 569 aa31.05■■■□□ 2.56
VEGFA-232ENST00000640653 OTOFQ9HC10 1997 aa31.05■■■□□ 2.56
VEGFA-232ENST00000640653 ARID4AP29374 1257 aaPredicted RBP31.04■■■□□ 2.56
VEGFA-232ENST00000640653 GJA5P36382 358 aa31.04■■■□□ 2.56
VEGFA-232ENST00000640653 VGLL4Q14135 290 aa31.04■■■□□ 2.56
VEGFA-232ENST00000640653 NOM1Q5C9Z4 860 aaKnown RBP31.04■■■□□ 2.56
VEGFA-232ENST00000640653 ERICH6Q7L0X2 663 aa31.04■■■□□ 2.56
VEGFA-232ENST00000640653 IFNL1Q8IU54 200 aa31.04■■■□□ 2.56
VEGFA-232ENST00000640653 HMG20BQ9P0W2 317 aa31.04■■■□□ 2.56
VEGFA-232ENST00000640653 GAKO14976 1311 aa31.03■■■□□ 2.56
VEGFA-232ENST00000640653 UQCRFS1P1P0C7P4 283 aa31.03■■■□□ 2.56
VEGFA-232ENST00000640653 SPATA5Q8NB90 893 aa31.03■■■□□ 2.56
VEGFA-232ENST00000640653 NOP58Q9Y2X3 529 aaKnown RBP31.03■■■□□ 2.56
VEGFA-232ENST00000640653 TCP10Q12799 353 aa31.02■■■□□ 2.56
VEGFA-232ENST00000640653 TNNI3KQ59H18 835 aa31.02■■■□□ 2.56
VEGFA-232ENST00000640653 FAM163AQ96GL9 167 aaPredicted RBP31.02■■■□□ 2.56
VEGFA-232ENST00000640653 WRNIP1Q96S55 665 aa31.02■■■□□ 2.56
VEGFA-232ENST00000640653 FPGT-TNNI3KV9GXZ4 949 aa31.02■■■□□ 2.56
VEGFA-232ENST00000640653 GPR25O00155 361 aa31.01■■■□□ 2.55
VEGFA-232ENST00000640653 NFIAQ12857 509 aa31.01■■■□□ 2.55
VEGFA-232ENST00000640653 OTUD7BQ6GQQ9 843 aa31.01■■■□□ 2.55
VEGFA-232ENST00000640653 CTU1Q7Z7A3 348 aaKnown RBP31.01■■■□□ 2.55
VEGFA-232ENST00000640653 ZNF341Q9BYN7 854 aa31.01■■■□□ 2.55
VEGFA-232ENST00000640653 LAMB1P07942 1786 aa31.01■■■□□ 2.55
VEGFA-232ENST00000640653 CEP85Q6P2H3 762 aa31■■■□□ 2.55
VEGFA-232ENST00000640653 ZNF296Q8WUU4 475 aaPredicted RBP31■■■□□ 2.55
VEGFA-232ENST00000640653 CCDC85CA6NKD9 419 aa30.99■■■□□ 2.55
VEGFA-232ENST00000640653 MECOMQ03112 1051 aa30.99■■■□□ 2.55
VEGFA-232ENST00000640653 CCDC158Q5M9N0 1113 aa30.99■■■□□ 2.55
VEGFA-232ENST00000640653 FAM198AQ9UFP1 575 aa30.99■■■□□ 2.55
VEGFA-232ENST00000640653 RCAN3Q9UKA8 241 aa30.99■■■□□ 2.55
VEGFA-232ENST00000640653 MROH7-TTC4A0A0A0MT08 1334 aa30.98■■■□□ 2.55
VEGFA-232ENST00000640653 MYH2Q9UKX2 1941 aa30.98■■■□□ 2.55
VEGFA-232ENST00000640653 TESPA1A2RU30 521 aaPredicted RBP30.98■■■□□ 2.55
VEGFA-232ENST00000640653 IGF2BP3O00425 579 aaKnown RBP eCLIP30.98■■■□□ 2.55
VEGFA-232ENST00000640653 MCAMP43121 646 aa30.98■■■□□ 2.55
VEGFA-232ENST00000640653 TTC39AQ5SRH9 613 aa30.98■■■□□ 2.55
VEGFA-232ENST00000640653 PI16Q6UXB8 463 aa30.98■■■□□ 2.55
VEGFA-232ENST00000640653 IDI2Q9BXS1 227 aa30.98■■■□□ 2.55
VEGFA-232ENST00000640653 GSTO1P78417 241 aa30.97■■■□□ 2.55
VEGFA-232ENST00000640653 MIGA2Q7L4E1 593 aa30.97■■■□□ 2.55
VEGFA-232ENST00000640653 OTUD5Q96G74 571 aa30.97■■■□□ 2.55
VEGFA-232ENST00000640653 SNCAIPQ9Y6H5 919 aa30.97■■■□□ 2.55
VEGFA-232ENST00000640653 SPDYE5A6NIY4 337 aa30.96■■■□□ 2.55
VEGFA-232ENST00000640653 ENTPD3O75355 529 aa30.96■■■□□ 2.55
VEGFA-232ENST00000640653 LDHCP07864 332 aa30.96■■■□□ 2.55
VEGFA-232ENST00000640653 BTDP43251 543 aa30.96■■■□□ 2.55
VEGFA-232ENST00000640653 GTF2A2P52657 109 aa30.96■■■□□ 2.55
VEGFA-232ENST00000640653 CNKSR2Q8WXI2 1034 aa30.96■■■□□ 2.55
VEGFA-232ENST00000640653 DBNDD2Q9BQY9 259 aa30.96■■■□□ 2.55
VEGFA-232ENST00000640653 FKTNO75072 461 aa30.95■■■□□ 2.55
VEGFA-232ENST00000640653 RGS3P49796 1198 aa30.95■■■□□ 2.55
VEGFA-232ENST00000640653 TBC1D9Q6ZT07 1266 aa30.95■■■□□ 2.55
VEGFA-232ENST00000640653 ERO1BQ86YB8 467 aa30.95■■■□□ 2.55
VEGFA-232ENST00000640653 ZKSCAN4Q969J2 545 aaPredicted RBP30.95■■■□□ 2.55
VEGFA-232ENST00000640653 MS4A4AQ96JQ5 239 aa30.95■■■□□ 2.55
VEGFA-232ENST00000640653 R3HDMLQ9H3Y0 253 aa30.95■■■□□ 2.55
VEGFA-232ENST00000640653 RAI14Q9P0K7 980 aa30.95■■■□□ 2.55
VEGFA-232ENST00000640653 DDX19BQ9UMR2 479 aa30.95■■■□□ 2.55
VEGFA-232ENST00000640653 NSUN4Q96CB9 384 aaKnown RBP30.94■■■□□ 2.54
VEGFA-232ENST00000640653 LRP2BPQ9P2M1 347 aa30.94■■■□□ 2.54
VEGFA-232ENST00000640653 GPR75-ASB3A0A0A6YYF3 556 aa30.93■■■□□ 2.54
VEGFA-232ENST00000640653 ERC1Q8IUD2 1116 aa30.93■■■□□ 2.54
VEGFA-232ENST00000640653 PTPN18Q99952 460 aa30.93■■■□□ 2.54
VEGFA-232ENST00000640653 RFX7Q2KHR2 1363 aa30.92■■■□□ 2.54
VEGFA-232ENST00000640653 CCL15-CCL14A0A0B4J2E2 113 aa30.92■■■□□ 2.54
VEGFA-232ENST00000640653 PKN2Q16513 984 aaKnown RBP30.92■■■□□ 2.54
VEGFA-232ENST00000640653 CCL15Q16663 113 aa30.92■■■□□ 2.54
VEGFA-232ENST00000640653 ZFPM1Q8IX07 1006 aa30.92■■■□□ 2.54
VEGFA-232ENST00000640653 ZNF384Q8TF68 577 aa30.92■■■□□ 2.54
VEGFA-232ENST00000640653 ZNF512BQ96KM6 892 aaPredicted RBP30.92■■■□□ 2.54
VEGFA-232ENST00000640653 CHMP4BQ9H444 224 aaKnown RBP30.92■■■□□ 2.54
VEGFA-232ENST00000640653 ZNF112Q9UJU3 913 aa30.92■■■□□ 2.54
VEGFA-232ENST00000640653 COG6Q9Y2V7 657 aa30.92■■■□□ 2.54
VEGFA-232ENST00000640653 WDHD1O75717 1129 aaPredicted RBP30.91■■■□□ 2.54
VEGFA-232ENST00000640653 MAP4K4O95819 1239 aaPredicted RBP30.91■■■□□ 2.54
VEGFA-232ENST00000640653 HSP90AB4PQ58FF6 505 aa30.91■■■□□ 2.54
VEGFA-232ENST00000640653 ZSCAN29Q8IWY8 852 aaPredicted RBP30.91■■■□□ 2.54
VEGFA-232ENST00000640653 SNRKQ9NRH2 765 aa30.91■■■□□ 2.54
VEGFA-232ENST00000640653 INPP5BP32019 993 aa30.9■■■□□ 2.54
VEGFA-232ENST00000640653 PPIL2Q13356 520 aa30.9■■■□□ 2.54
VEGFA-232ENST00000640653 BRI3BPQ8WY22 251 aa30.9■■■□□ 2.54
VEGFA-232ENST00000640653 DBNLQ9UJU6 430 aaKnown RBP30.9■■■□□ 2.54
VEGFA-232ENST00000640653 EXOC6BQ9Y2D4 811 aa30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms