RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 PUM3Q15397 648 aaKnown RBP18.82■□□□□ 0.6
SYNE2-228ENST00000639659 RABL6Q3YEC7 729 aaPredicted RBP18.82■□□□□ 0.6
SYNE2-228ENST00000639659 UTYO14607 1347 aa18.81■□□□□ 0.6
SYNE2-228ENST00000639659 H0YGN5 161 aa18.81■□□□□ 0.6
SYNE2-228ENST00000639659 FMNL1O95466 1100 aaPredicted RBP18.81■□□□□ 0.6
SYNE2-228ENST00000639659 SLC5A1P13866 664 aa18.81■□□□□ 0.6
SYNE2-228ENST00000639659 PSMC4P43686 418 aa18.81■□□□□ 0.6
SYNE2-228ENST00000639659 ZCCHC17Q9NP64 241 aaKnown RBP18.81■□□□□ 0.6
SYNE2-228ENST00000639659 BIN2Q9UBW5 565 aaPredicted RBP18.81■□□□□ 0.6
SYNE2-228ENST00000639659 RPAP1Q9BWH6 1393 aaPredicted RBP18.81■□□□□ 0.6
SYNE2-228ENST00000639659 PDHXO00330 501 aa18.8■□□□□ 0.6
SYNE2-228ENST00000639659 PPATQ06203 517 aa18.8■□□□□ 0.6
SYNE2-228ENST00000639659 MTFR1Q15390 333 aa18.8■□□□□ 0.6
SYNE2-228ENST00000639659 DIXDC1Q155Q3 683 aa18.8■□□□□ 0.6
SYNE2-228ENST00000639659 RAET1EQ8TD07 263 aa18.8■□□□□ 0.6
SYNE2-228ENST00000639659 DPF3Q92784 378 aa18.8■□□□□ 0.6
SYNE2-228ENST00000639659 FKBP1CQ5VVH2 108 aa18.79■□□□□ 0.6
SYNE2-228ENST00000639659 HHIPL2Q6UWX4 724 aa18.79■□□□□ 0.6
SYNE2-228ENST00000639659 MRPL50Q8N5N7 158 aaKnown RBP18.79■□□□□ 0.6
SYNE2-228ENST00000639659 SUGT1Q9Y2Z0 365 aa18.79■□□□□ 0.6
SYNE2-228ENST00000639659 DAGLAQ9Y4D2 1042 aa18.79■□□□□ 0.6
SYNE2-228ENST00000639659 MYPNQ86TC9 1320 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 GNRH1P01148 92 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 OSBPP22059 807 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 CTGFP29279 349 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 PRMT2P55345 433 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 C17orf99Q6UX52 265 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 CHRDL2Q6WN34 429 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 ANKRD23Q86SG2 305 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 WDR66Q8TBY9 1149 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 FAM151AQ8WW52 585 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 TRIM47Q96LD4 638 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 SIL1Q9H173 461 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 SRRDQ9UH36 339 aa18.78■□□□□ 0.6
SYNE2-228ENST00000639659 FGFR2P21802 821 aa18.77■□□□□ 0.6
SYNE2-228ENST00000639659 HOXD10P28358 340 aa18.77■□□□□ 0.6
SYNE2-228ENST00000639659 NFIAQ12857 509 aa18.77■□□□□ 0.6
SYNE2-228ENST00000639659 CDC42EP5Q6NZY7 148 aa18.77■□□□□ 0.6
SYNE2-228ENST00000639659 MRIQ9BWK5 157 aa18.77■□□□□ 0.6
SYNE2-228ENST00000639659 EYA2O00167 538 aa18.76■□□□□ 0.59
SYNE2-228ENST00000639659 PRDX5P30044 214 aa18.76■□□□□ 0.59
SYNE2-228ENST00000639659 GRK4P32298 578 aa18.76■□□□□ 0.59
SYNE2-228ENST00000639659 LPIN2Q92539 896 aa18.76■□□□□ 0.59
SYNE2-228ENST00000639659 SHISA4Q96DD7 197 aa18.76■□□□□ 0.59
SYNE2-228ENST00000639659 USP40Q9NVE5 1235 aa18.76■□□□□ 0.59
SYNE2-228ENST00000639659 CEP290O15078 2479 aa18.76■□□□□ 0.59
SYNE2-228ENST00000639659 PTPRCP08575 1304 aa18.75■□□□□ 0.59
SYNE2-228ENST00000639659 KIF16BQ96L93 1317 aa18.75■□□□□ 0.59
SYNE2-228ENST00000639659 LDHBP07195 334 aaKnown RBP18.75■□□□□ 0.59
SYNE2-228ENST00000639659 PARK7Q99497 189 aaKnown RBP18.75■□□□□ 0.59
SYNE2-228ENST00000639659 USP44Q9H0E7 712 aa18.75■□□□□ 0.59
SYNE2-228ENST00000639659 CYP2C8P10632 490 aa18.74■□□□□ 0.59
SYNE2-228ENST00000639659 CCL5P13501 91 aa18.74■□□□□ 0.59
SYNE2-228ENST00000639659 ATP2B3Q16720 1220 aa18.74■□□□□ 0.59
SYNE2-228ENST00000639659 RNF208Q9H0X6 261 aa18.74■□□□□ 0.59
SYNE2-228ENST00000639659 KCNH4Q9UQ05 1017 aa18.74■□□□□ 0.59
SYNE2-228ENST00000639659 DOCK2Q92608 1830 aa18.74■□□□□ 0.59
SYNE2-228ENST00000639659 TRIOBPQ9H2D6 2365 aa18.73■□□□□ 0.59
SYNE2-228ENST00000639659 FCGRTP55899 365 aa18.73■□□□□ 0.59
SYNE2-228ENST00000639659 PRKCZQ05513 592 aa18.73■□□□□ 0.59
SYNE2-228ENST00000639659 GADL1Q6ZQY3 521 aa18.73■□□□□ 0.59
SYNE2-228ENST00000639659 ZSCAN29Q8IWY8 852 aaPredicted RBP18.73■□□□□ 0.59
SYNE2-228ENST00000639659 SSH1Q8WYL5 1049 aa18.73■□□□□ 0.59
SYNE2-228ENST00000639659 GNL3LQ9NVN8 582 aaKnown RBP18.73■□□□□ 0.59
SYNE2-228ENST00000639659 FAM198AQ9UFP1 575 aa18.73■□□□□ 0.59
SYNE2-228ENST00000639659 ADGRA2Q96PE1 1338 aa18.73■□□□□ 0.59
SYNE2-228ENST00000639659 RFX5P48382 616 aaPredicted RBP18.72■□□□□ 0.59
SYNE2-228ENST00000639659 UBXN2AP68543 259 aa18.72■□□□□ 0.59
SYNE2-228ENST00000639659 ZFPM1Q8IX07 1006 aa18.72■□□□□ 0.59
SYNE2-228ENST00000639659 NKX2-3Q8TAU0 364 aa18.72■□□□□ 0.59
SYNE2-228ENST00000639659 PICK1Q9NRD5 415 aa18.72■□□□□ 0.59
SYNE2-228ENST00000639659 ZNF112Q9UJU3 913 aa18.72■□□□□ 0.59
SYNE2-228ENST00000639659 TAOK2Q9UL54 1235 aa18.72■□□□□ 0.59
SYNE2-228ENST00000639659 RGS3P49796 1198 aa18.71■□□□□ 0.59
SYNE2-228ENST00000639659 MOGSQ13724 837 aa18.71■□□□□ 0.59
SYNE2-228ENST00000639659 NOL9Q5SY16 702 aaKnown RBP18.71■□□□□ 0.59
SYNE2-228ENST00000639659 ATG9AQ7Z3C6 839 aa18.71■□□□□ 0.59
SYNE2-228ENST00000639659 CEP126Q9P2H0 1117 aa18.71■□□□□ 0.59
SYNE2-228ENST00000639659 MGAMO43451 1857 aa18.71■□□□□ 0.59
SYNE2-228ENST00000639659 PHKA1P46020 1223 aa18.7■□□□□ 0.58
SYNE2-228ENST00000639659 GPAT2Q6NUI2 795 aa18.7■□□□□ 0.58
SYNE2-228ENST00000639659 DZIP1Q86YF9 867 aaKnown RBP18.7■□□□□ 0.58
SYNE2-228ENST00000639659 HTATIP2Q9BUP3 242 aa18.7■□□□□ 0.58
SYNE2-228ENST00000639659 RBM27Q9P2N5 1060 aaKnown RBP18.7■□□□□ 0.58
SYNE2-228ENST00000639659 GABRQQ9UN88 632 aa18.7■□□□□ 0.58
SYNE2-228ENST00000639659 ZHX2Q9Y6X8 837 aa18.7■□□□□ 0.58
SYNE2-228ENST00000639659 MYH2Q9UKX2 1941 aa18.69■□□□□ 0.58
SYNE2-228ENST00000639659 FARP2O94887 1054 aaPredicted RBP18.69■□□□□ 0.58
SYNE2-228ENST00000639659 GJB1P08034 283 aa18.69■□□□□ 0.58
SYNE2-228ENST00000639659 UBTFL1P0CB47 393 aaPredicted RBP18.69■□□□□ 0.58
SYNE2-228ENST00000639659 GJA8P48165 433 aa18.69■□□□□ 0.58
SYNE2-228ENST00000639659 PICALMQ13492 652 aa18.69■□□□□ 0.58
SYNE2-228ENST00000639659 SCYL3Q8IZE3 742 aa18.69■□□□□ 0.58
SYNE2-228ENST00000639659 UNC93B1Q9H1C4 597 aa18.69■□□□□ 0.58
SYNE2-228ENST00000639659 SMC4Q9NTJ3 1288 aa18.69■□□□□ 0.58
SYNE2-228ENST00000639659 DENND2AQ9ULE3 1009 aa18.69■□□□□ 0.58
SYNE2-228ENST00000639659 LRRFIP2Q9Y608 721 aaKnown RBP18.69■□□□□ 0.58
SYNE2-228ENST00000639659 CXCL11O14625 94 aa18.68■□□□□ 0.58
SYNE2-228ENST00000639659 SLURP2P0DP57 97 aa18.68■□□□□ 0.58
SYNE2-228ENST00000639659 BCRP11274 1271 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms