RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CRISPLD2Q9H0B8 497 aa20.78■□□□□ 0.92
CLN3-264ENST00000637985 VCANP13611 3396 aa20.78■□□□□ 0.92
CLN3-264ENST00000637985 ZNF316A6NFI3 1004 aaPredicted RBP20.77■□□□□ 0.92
CLN3-264ENST00000637985 FOXO4P98177 505 aa20.77■□□□□ 0.92
CLN3-264ENST00000637985 GRIK5Q16478 980 aa20.77■□□□□ 0.92
CLN3-264ENST00000637985 PXYLP1Q8TE99 480 aa20.77■□□□□ 0.92
CLN3-264ENST00000637985 PAWRQ96IZ0 340 aaKnown RBP20.77■□□□□ 0.92
CLN3-264ENST00000637985 STK31Q9BXU1 1019 aa20.77■□□□□ 0.92
CLN3-264ENST00000637985 MYH16Q9H6N6 1097 aa20.77■□□□□ 0.92
CLN3-264ENST00000637985 PAK6Q9NQU5 681 aaPredicted RBP20.77■□□□□ 0.92
CLN3-264ENST00000637985 PLIN1O60240 522 aa20.76■□□□□ 0.91
CLN3-264ENST00000637985 INHAP05111 366 aa20.76■□□□□ 0.91
CLN3-264ENST00000637985 HIBADHP31937 336 aaKnown RBP20.76■□□□□ 0.91
CLN3-264ENST00000637985 INPP5BP32019 993 aa20.76■□□□□ 0.91
CLN3-264ENST00000637985 GYG1P46976 350 aa20.76■□□□□ 0.91
CLN3-264ENST00000637985 FKBP1CQ5VVH2 108 aa20.76■□□□□ 0.91
CLN3-264ENST00000637985 DCAF15Q66K64 600 aa20.76■□□□□ 0.91
CLN3-264ENST00000637985 FAM84BQ96KN1 310 aaPredicted RBP20.76■□□□□ 0.91
CLN3-264ENST00000637985 PARK7Q99497 189 aaKnown RBP20.76■□□□□ 0.91
CLN3-264ENST00000637985 ELNP15502 786 aa20.75■□□□□ 0.91
CLN3-264ENST00000637985 FLT3LGP49771 235 aa20.75■□□□□ 0.91
CLN3-264ENST00000637985 BCAMP50895 628 aa20.75■□□□□ 0.91
CLN3-264ENST00000637985 NECAB2Q7Z6G3 386 aa20.75■□□□□ 0.91
CLN3-264ENST00000637985 LINS1Q8NG48 757 aa20.75■□□□□ 0.91
CLN3-264ENST00000637985 ZNF341Q9BYN7 854 aa20.75■□□□□ 0.91
CLN3-264ENST00000637985 CYP2C8P10632 490 aa20.74■□□□□ 0.91
CLN3-264ENST00000637985 IRF5Q13568 498 aa20.74■□□□□ 0.91
CLN3-264ENST00000637985 UBE4AQ14139 1066 aa20.74■□□□□ 0.91
CLN3-264ENST00000637985 LDHAL6AQ6ZMR3 332 aa20.74■□□□□ 0.91
CLN3-264ENST00000637985 MIGA2Q7L4E1 593 aa20.74■□□□□ 0.91
CLN3-264ENST00000637985 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.74■□□□□ 0.91
CLN3-264ENST00000637985 RPAP1Q9BWH6 1393 aaPredicted RBP20.73■□□□□ 0.91
CLN3-264ENST00000637985 GPAT2Q6NUI2 795 aa20.73■□□□□ 0.91
CLN3-264ENST00000637985 C7orf61Q8IZ16 206 aa20.73■□□□□ 0.91
CLN3-264ENST00000637985 TDHQ8IZJ6 230 aa20.73■□□□□ 0.91
CLN3-264ENST00000637985 DIS3LQ8TF46 1054 aaKnown RBP20.73■□□□□ 0.91
CLN3-264ENST00000637985 TEKT1Q969V4 418 aa20.73■□□□□ 0.91
CLN3-264ENST00000637985 ZNF594Q96JF6 807 aaPredicted RBP20.73■□□□□ 0.91
CLN3-264ENST00000637985 ZDHHC15Q96MV8 337 aa20.73■□□□□ 0.91
CLN3-264ENST00000637985 MRIQ9BWK5 157 aa20.73■□□□□ 0.91
CLN3-264ENST00000637985 TMOD2Q9NZR1 351 aa20.73■□□□□ 0.91
CLN3-264ENST00000637985 ZNF112Q9UJU3 913 aa20.73■□□□□ 0.91
CLN3-264ENST00000637985 ZMYND8Q9ULU4 1186 aaPredicted RBP20.73■□□□□ 0.91
CLN3-264ENST00000637985 CHMP3Q9Y3E7 222 aa20.73■□□□□ 0.91
CLN3-264ENST00000637985 SLC4A2P04920 1241 aa20.72■□□□□ 0.91
CLN3-264ENST00000637985 APOBEC3HQ6NTF7 200 aaKnown RBP20.72■□□□□ 0.91
CLN3-264ENST00000637985 DNAAF4Q8WXU2 420 aa20.72■□□□□ 0.91
CLN3-264ENST00000637985 CCDC184Q52MB2 194 aa20.71■□□□□ 0.91
CLN3-264ENST00000637985 CNNM1Q9NRU3 951 aa20.71■□□□□ 0.91
CLN3-264ENST00000637985 ANP32CO43423 234 aa20.7■□□□□ 0.9
CLN3-264ENST00000637985 MAGEA10P43363 369 aaPredicted RBP20.7■□□□□ 0.9
CLN3-264ENST00000637985 CCDC57Q2TAC2 916 aa20.7■□□□□ 0.9
CLN3-264ENST00000637985 LMBR1LQ6UX01 489 aa20.7■□□□□ 0.9
CLN3-264ENST00000637985 ANKLE1Q8NAG6 615 aa20.7■□□□□ 0.9
CLN3-264ENST00000637985 SPTBN5Q9NRC6 3674 aaKnown RBP20.7■□□□□ 0.9
CLN3-264ENST00000637985 CXCL11O14625 94 aa20.69■□□□□ 0.9
CLN3-264ENST00000637985 FLIIQ13045 1269 aa20.69■□□□□ 0.9
CLN3-264ENST00000637985 NOL9Q5SY16 702 aaKnown RBP20.69■□□□□ 0.9
CLN3-264ENST00000637985 FBXO33Q7Z6M2 555 aa20.69■□□□□ 0.9
CLN3-264ENST00000637985 TBC1D22AQ8WUA7 517 aa20.69■□□□□ 0.9
CLN3-264ENST00000637985 DOCK3Q8IZD9 2030 aa20.68■□□□□ 0.9
CLN3-264ENST00000637985 TNPO2O14787 897 aaKnown RBP20.68■□□□□ 0.9
CLN3-264ENST00000637985 TAF7LQ5H9L4 462 aa20.68■□□□□ 0.9
CLN3-264ENST00000637985 EPHA10Q5JZY3 1008 aa20.68■□□□□ 0.9
CLN3-264ENST00000637985 SYN1P17600 705 aa20.67■□□□□ 0.9
CLN3-264ENST00000637985 CCDC27Q2M243 656 aa20.67■□□□□ 0.9
CLN3-264ENST00000637985 FAM151AQ8WW52 585 aa20.67■□□□□ 0.9
CLN3-264ENST00000637985 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.67■□□□□ 0.9
CLN3-264ENST00000637985 IQSEC3Q9UPP2 1182 aaPredicted RBP20.67■□□□□ 0.9
CLN3-264ENST00000637985 LAMA2P24043 3122 aaKnown RBP20.67■□□□□ 0.9
CLN3-264ENST00000637985 CHAF1AQ13111 956 aaPredicted RBP20.66■□□□□ 0.9
CLN3-264ENST00000637985 FKBP5Q13451 457 aaPredicted RBP20.66■□□□□ 0.9
CLN3-264ENST00000637985 NCBP3Q53F19 620 aaKnown RBP20.66■□□□□ 0.9
CLN3-264ENST00000637985 TSR2Q969E8 191 aaKnown RBP20.66■□□□□ 0.9
CLN3-264ENST00000637985 UBE2OQ9C0C9 1292 aaKnown RBP20.66■□□□□ 0.9
CLN3-264ENST00000637985 NBPF3Q9H094 633 aa20.66■□□□□ 0.9
CLN3-264ENST00000637985 MRS2Q9HD23 443 aa20.66■□□□□ 0.9
CLN3-264ENST00000637985 RPTORQ8N122 1335 aa20.66■□□□□ 0.9
CLN3-264ENST00000637985 TWISTNBQ3B726 338 aaPredicted RBP20.65■□□□□ 0.9
CLN3-264ENST00000637985 HHIPL2Q6UWX4 724 aa20.65■□□□□ 0.9
CLN3-264ENST00000637985 FASTKD5Q7L8L6 764 aaKnown RBP20.65■□□□□ 0.9
CLN3-264ENST00000637985 SLC45A1Q9Y2W3 748 aa20.65■□□□□ 0.9
CLN3-264ENST00000637985 EYSQ5T1H1 3165 aa20.65■□□□□ 0.9
CLN3-264ENST00000637985 A0A0G2JLL6 359 aaPredicted RBP20.64■□□□□ 0.89
CLN3-264ENST00000637985 POTEB2H3BUK9 544 aa20.64■□□□□ 0.89
CLN3-264ENST00000637985 PRRT2Q7Z6L0 340 aaPredicted RBP20.64■□□□□ 0.89
CLN3-264ENST00000637985 VPS37DQ86XT2 251 aa20.64■□□□□ 0.89
CLN3-264ENST00000637985 GUCD1Q96NT3 240 aa20.64■□□□□ 0.89
CLN3-264ENST00000637985 SUGT1Q9Y2Z0 365 aa20.64■□□□□ 0.89
CLN3-264ENST00000637985 MAST3O60307 1309 aa20.63■□□□□ 0.89
CLN3-264ENST00000637985 FAM109BQ6ICB4 259 aaPredicted RBP20.63■□□□□ 0.89
CLN3-264ENST00000637985 PUS3Q9BZE2 481 aaKnown RBP20.63■□□□□ 0.89
CLN3-264ENST00000637985 PRDM6Q9NQX0 595 aa20.63■□□□□ 0.89
CLN3-264ENST00000637985 TAOK2Q9UL54 1235 aa20.63■□□□□ 0.89
CLN3-264ENST00000637985 BEND3Q5T5X7 828 aa20.62■□□□□ 0.89
CLN3-264ENST00000637985 WWC1Q8IX03 1113 aa20.62■□□□□ 0.89
CLN3-264ENST00000637985 COA7Q96BR5 231 aa20.62■□□□□ 0.89
CLN3-264ENST00000637985 C11orf49Q9H6J7 331 aa20.62■□□□□ 0.89
CLN3-264ENST00000637985 AK9Q5TCS8 1911 aa20.62■□□□□ 0.89
CLN3-264ENST00000637985 FRAT2O75474 233 aaPredicted RBP20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms