RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 GSG1L2A8MUP6 293 aa16.86■□□□□ 0.29
CLN3-242ENST00000635958 FZD9O00144 591 aa16.86■□□□□ 0.29
CLN3-242ENST00000635958 PSMD14O00487 310 aa16.86■□□□□ 0.29
CLN3-242ENST00000635958 BAG3O95817 575 aa16.86■□□□□ 0.29
CLN3-242ENST00000635958 FGAP02671 866 aa16.86■□□□□ 0.29
CLN3-242ENST00000635958 DYNLL1P63167 89 aaKnown RBP16.86■□□□□ 0.29
CLN3-242ENST00000635958 CREB3L3Q68CJ9 461 aa16.86■□□□□ 0.29
CLN3-242ENST00000635958 CTNNA3Q9UI47 895 aa16.86■□□□□ 0.29
CLN3-242ENST00000635958 PALD1Q9ULE6 856 aa16.86■□□□□ 0.29
CLN3-242ENST00000635958 SLC27A2O14975 620 aa16.85■□□□□ 0.29
CLN3-242ENST00000635958 RAD17O75943 681 aa16.85■□□□□ 0.29
CLN3-242ENST00000635958 LMNB1P20700 586 aa16.85■□□□□ 0.29
CLN3-242ENST00000635958 RNF20Q5VTR2 975 aa16.85■□□□□ 0.29
CLN3-242ENST00000635958 RASEFQ8IZ41 740 aa16.85■□□□□ 0.29
CLN3-242ENST00000635958 IL27Q8NEV9 243 aa16.85■□□□□ 0.29
CLN3-242ENST00000635958 AATFQ9NY61 560 aaKnown RBP eCLIP16.85■□□□□ 0.29
CLN3-242ENST00000635958 SNX14Q9Y5W7 946 aa16.85■□□□□ 0.29
CLN3-242ENST00000635958 CIAPIN1Q6FI81 312 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 GIMAP6Q6P9H5 292 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 IFNL3Q8IZI9 196 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 AGBL3Q8NEM8 1001 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 DAGLAQ9Y4D2 1042 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 SLC4A4Q9Y6R1 1079 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 PRKAB2O43741 272 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 PLCG2P16885 1265 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 TNIP1Q15025 636 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 KIAA0825Q8IV33 1275 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 TEKT1Q969V4 418 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 CRNKL1Q9BZJ0 848 aaKnown RBP16.84■□□□□ 0.29
CLN3-242ENST00000635958 SERPINA10Q9UK55 444 aa16.84■□□□□ 0.29
CLN3-242ENST00000635958 F8W031 263 aaPredicted RBP16.83■□□□□ 0.28
CLN3-242ENST00000635958 CYP21A2P08686 494 aa16.83■□□□□ 0.28
CLN3-242ENST00000635958 ZKSCAN1P17029 563 aaPredicted RBP16.83■□□□□ 0.28
CLN3-242ENST00000635958 MMP14P50281 582 aa16.83■□□□□ 0.28
CLN3-242ENST00000635958 ZDHHC15Q96MV8 337 aa16.83■□□□□ 0.28
CLN3-242ENST00000635958 NOL10Q9BSC4 688 aaKnown RBP16.83■□□□□ 0.28
CLN3-242ENST00000635958 NACAP1Q9BZK3 213 aa16.83■□□□□ 0.28
CLN3-242ENST00000635958 EPB41L4AQ9HCS5 686 aaPredicted RBP16.83■□□□□ 0.28
CLN3-242ENST00000635958 ATP8A2Q9NTI2 1148 aa16.83■□□□□ 0.28
CLN3-242ENST00000635958 DICER1Q9UPY3 1922 aaKnown RBP16.82■□□□□ 0.28
CLN3-242ENST00000635958 APPP05067 770 aa16.82■□□□□ 0.28
CLN3-242ENST00000635958 YY1P25490 414 aa16.82■□□□□ 0.28
CLN3-242ENST00000635958 BTDP43251 543 aa16.82■□□□□ 0.28
CLN3-242ENST00000635958 CRKP46108 304 aa16.82■□□□□ 0.28
CLN3-242ENST00000635958 RHBDL3P58872 404 aa16.82■□□□□ 0.28
CLN3-242ENST00000635958 SBF1O95248 1867 aa16.82■□□□□ 0.28
CLN3-242ENST00000635958 SCNN1DP51172 638 aa16.82■□□□□ 0.28
CLN3-242ENST00000635958 RABEP1Q15276 862 aa16.82■□□□□ 0.28
CLN3-242ENST00000635958 APOBEC3HQ6NTF7 200 aaKnown RBP16.82■□□□□ 0.28
CLN3-242ENST00000635958 FAM43AQ8N2R8 423 aa16.82■□□□□ 0.28
CLN3-242ENST00000635958 TM6SF1Q9BZW5 370 aa16.82■□□□□ 0.28
CLN3-242ENST00000635958 MKRN1Q9UHC7 482 aaKnown RBP16.82■□□□□ 0.28
CLN3-242ENST00000635958 RPS12P25398 132 aaKnown RBP16.81■□□□□ 0.28
CLN3-242ENST00000635958 EIF6P56537 245 aaKnown RBP16.81■□□□□ 0.28
CLN3-242ENST00000635958 SH3RF3Q8TEJ3 882 aaPredicted RBP16.81■□□□□ 0.28
CLN3-242ENST00000635958 SDR42E1Q8WUS8 393 aa16.81■□□□□ 0.28
CLN3-242ENST00000635958 KRT32Q14532 448 aa16.8■□□□□ 0.28
CLN3-242ENST00000635958 GPR162Q16538 588 aa16.8■□□□□ 0.28
CLN3-242ENST00000635958 IMMTQ16891 758 aaKnown RBP16.8■□□□□ 0.28
CLN3-242ENST00000635958 NAPBQ9H115 298 aa16.8■□□□□ 0.28
CLN3-242ENST00000635958 DCP1AQ9NPI6 582 aaPredicted RBP16.8■□□□□ 0.28
CLN3-242ENST00000635958 CHMP5Q9NZZ3 219 aa16.8■□□□□ 0.28
CLN3-242ENST00000635958 DPF2Q92785 391 aa16.8■□□□□ 0.28
CLN3-242ENST00000635958 TBC1D2Q9BYX2 928 aa16.8■□□□□ 0.28
CLN3-242ENST00000635958 ZBTB12Q9Y330 459 aaPredicted RBP16.8■□□□□ 0.28
CLN3-242ENST00000635958 TAF6LQ9Y6J9 622 aa16.8■□□□□ 0.28
CLN3-242ENST00000635958 ZNF213O14771 459 aa16.79■□□□□ 0.28
CLN3-242ENST00000635958 GRIN3BO60391 1043 aa16.79■□□□□ 0.28
CLN3-242ENST00000635958 USP17L8P0C7I0 530 aa16.79■□□□□ 0.28
CLN3-242ENST00000635958 PTMSP20962 102 aa16.79■□□□□ 0.28
CLN3-242ENST00000635958 OGFOD1Q8N543 542 aa16.79■□□□□ 0.28
CLN3-242ENST00000635958 MTMR14Q8NCE2 650 aa16.79■□□□□ 0.28
CLN3-242ENST00000635958 HDAC9Q9UKV0 1011 aa16.79■□□□□ 0.28
CLN3-242ENST00000635958 PSMA5P28066 241 aa16.78■□□□□ 0.28
CLN3-242ENST00000635958 TDO2P48775 406 aa16.78■□□□□ 0.28
CLN3-242ENST00000635958 ADCK5Q3MIX3 580 aa16.78■□□□□ 0.28
CLN3-242ENST00000635958 SBK1Q52WX2 424 aa16.78■□□□□ 0.28
CLN3-242ENST00000635958 TEX11Q8IYF3 940 aa16.78■□□□□ 0.28
CLN3-242ENST00000635958 ZSWIM6Q9HCJ5 1215 aa16.78■□□□□ 0.28
CLN3-242ENST00000635958 ANAPC4Q9UJX5 808 aa16.78■□□□□ 0.28
CLN3-242ENST00000635958 ISY1Q9ULR0 285 aaKnown RBP16.78■□□□□ 0.28
CLN3-242ENST00000635958 ZNF280AP59817 542 aaPredicted RBP16.77■□□□□ 0.28
CLN3-242ENST00000635958 CFAP100Q494V2 611 aa16.77■□□□□ 0.28
CLN3-242ENST00000635958 CDC42EP5Q6NZY7 148 aa16.77■□□□□ 0.28
CLN3-242ENST00000635958 USP40Q9NVE5 1235 aa16.77■□□□□ 0.28
CLN3-242ENST00000635958 CTR9Q6PD62 1173 aa16.77■□□□□ 0.27
CLN3-242ENST00000635958 STOX1Q6ZVD7 989 aa16.77■□□□□ 0.27
CLN3-242ENST00000635958 TGFBRAP1Q8WUH2 860 aa16.77■□□□□ 0.27
CLN3-242ENST00000635958 SNX21Q969T3 373 aa16.77■□□□□ 0.27
CLN3-242ENST00000635958 NBPF3Q9H094 633 aa16.77■□□□□ 0.27
CLN3-242ENST00000635958 E7EWF7 191 aa16.76■□□□□ 0.27
CLN3-242ENST00000635958 NPM3O75607 178 aaKnown RBP16.76■□□□□ 0.27
CLN3-242ENST00000635958 WDHD1O75717 1129 aaPredicted RBP16.76■□□□□ 0.27
CLN3-242ENST00000635958 USP5P45974 858 aa16.76■□□□□ 0.27
CLN3-242ENST00000635958 ZBED3Q96IU2 234 aaPredicted RBP16.76■□□□□ 0.27
CLN3-242ENST00000635958 PRMT6Q96LA8 375 aaPredicted RBP16.76■□□□□ 0.27
CLN3-242ENST00000635958 JAKMIP1Q96N16 626 aaKnown RBP16.76■□□□□ 0.27
CLN3-242ENST00000635958 ZNF541Q9H0D2 1346 aa16.76■□□□□ 0.27
CLN3-242ENST00000635958 SPDYE2BA6NHP3 402 aa16.75■□□□□ 0.27
CLN3-242ENST00000635958 USP17L12C9JPN9 530 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms