RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 PPP2R2CQ9Y2T4 447 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 A0A087WWV3 80 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 VWA3AA6NCI4 1184 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 TUBBP07437 444 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 ARHGAP25P42331 645 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 WLSQ5T9L3 541 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 CADPS2Q86UW7 1296 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 SAAL1Q96ER3 474 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 PGBD1Q96JS3 809 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 PLEKHF1Q96S99 279 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 PNKPQ96T60 521 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 ANKZF1Q9H8Y5 726 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 IRAK1P51617 712 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 PDCD2Q16342 344 aaPredicted RBP9.01□□□□□ -0.97
VPS11-209ENST00000622309 NECAB1Q8N987 351 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 IGSF22Q8N9C0 903 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 KLHL23Q8NBE8 558 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 STK31Q9BXU1 1019 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 KLHL42Q9P2K6 505 aa9.01□□□□□ -0.97
VPS11-209ENST00000622309 NWD1Q149M9 1564 aa9□□□□□ -0.97
VPS11-209ENST00000622309 METP08581 1390 aa9□□□□□ -0.97
VPS11-209ENST00000622309 ANKRD18BA2A2Z9 1011 aa9□□□□□ -0.97
VPS11-209ENST00000622309 CPA1P15085 419 aa9□□□□□ -0.97
VPS11-209ENST00000622309 RPS6KA3P51812 740 aa9□□□□□ -0.97
VPS11-209ENST00000622309 MTA1Q13330 715 aa9□□□□□ -0.97
VPS11-209ENST00000622309 NME9Q86XW9 330 aa9□□□□□ -0.97
VPS11-209ENST00000622309 KIRREL3Q8IZU9 778 aa9□□□□□ -0.97
VPS11-209ENST00000622309 TSPYL6Q8N831 410 aa9□□□□□ -0.97
VPS11-209ENST00000622309 ZBTB10Q96DT7 871 aa9□□□□□ -0.97
VPS11-209ENST00000622309 SPDL1Q96EA4 605 aa9□□□□□ -0.97
VPS11-209ENST00000622309 SAMM50Q9Y512 469 aa9□□□□□ -0.97
VPS11-209ENST00000622309 KIF24Q5T7B8 1368 aa9□□□□□ -0.97
VPS11-209ENST00000622309 CUTAO60888 179 aa9□□□□□ -0.97
VPS11-209ENST00000622309 FSBPO95073 299 aa9□□□□□ -0.97
VPS11-209ENST00000622309 RXRBP28702 533 aa9□□□□□ -0.97
VPS11-209ENST00000622309 KIF4BQ2VIQ3 1234 aa9□□□□□ -0.97
VPS11-209ENST00000622309 ARMC3Q5W041 872 aa9□□□□□ -0.97
VPS11-209ENST00000622309 MICALCLQ6ZW33 695 aa9□□□□□ -0.97
VPS11-209ENST00000622309 TTC30AQ86WT1 665 aa9□□□□□ -0.97
VPS11-209ENST00000622309 RETREG2Q8NC44 543 aa9□□□□□ -0.97
VPS11-209ENST00000622309 MSANTD4Q8NCY6 345 aa9□□□□□ -0.97
VPS11-209ENST00000622309 PARD3BQ8TEW8 1205 aa9□□□□□ -0.97
VPS11-209ENST00000622309 RSRC1Q96IZ7 334 aaKnown RBP9□□□□□ -0.97
VPS11-209ENST00000622309 KAT14Q9H8E8 782 aa9□□□□□ -0.97
VPS11-209ENST00000622309 ARHGAP6O43182 974 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 NAT1P18440 290 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 RRS1Q15050 365 aaKnown RBP8.99□□□□□ -0.97
VPS11-209ENST00000622309 C1QTNF12Q5T7M4 302 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 CCAR1Q8IX12 1150 aaKnown RBP8.99□□□□□ -0.97
VPS11-209ENST00000622309 SDR16C5Q8N3Y7 309 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 HYPKQ9NX55 129 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 EMILIN1Q9Y6C2 1016 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 ANKRD62A6NC57 917 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 LRRIQ3A6PVS8 624 aaPredicted RBP8.99□□□□□ -0.97
VPS11-209ENST00000622309 PECAM1P16284 738 aaPredicted RBP8.99□□□□□ -0.97
VPS11-209ENST00000622309 FNTAP49354 379 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 VSNL1P62760 191 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 SNCBQ16143 134 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 TWISTNBQ3B726 338 aaPredicted RBP8.99□□□□□ -0.97
VPS11-209ENST00000622309 ZFYVE27Q5T4F4 411 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 RNF187Q5TA31 235 aaPredicted RBP8.99□□□□□ -0.97
VPS11-209ENST00000622309 CCDC50Q8IVM0 306 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 CAPS2Q9BXY5 557 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 CFAP45Q9UL16 551 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 CDHR2Q9BYE9 1310 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 NDUFAB1O14561 156 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 DIAPH1O60610 1272 aaKnown RBP8.99□□□□□ -0.97
VPS11-209ENST00000622309 RPSAP08865 295 aaKnown RBP8.99□□□□□ -0.97
VPS11-209ENST00000622309 CEBPZQ03701 1054 aaKnown RBP8.99□□□□□ -0.97
VPS11-209ENST00000622309 CCDC40Q4G0X9 1142 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 SPATS2Q86XZ4 545 aaKnown RBP8.99□□□□□ -0.97
VPS11-209ENST00000622309 TTC30BQ8N4P2 665 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 SCLT1Q96NL6 688 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 SDF4Q9BRK5 362 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 CRACR2AQ9BSW2 395 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 SUDS3Q9H7L9 328 aaPredicted RBP8.99□□□□□ -0.97
VPS11-209ENST00000622309 CYP46A1Q9Y6A2 500 aa8.99□□□□□ -0.97
VPS11-209ENST00000622309 ADGRB2O60241 1585 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 ENO4A6NNW6 628 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 SHOX2O60902 331 aaPredicted RBP8.98□□□□□ -0.97
VPS11-209ENST00000622309 PRKAR2BP31323 418 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 PPFIA1Q13136 1202 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 ANKRD23Q86SG2 305 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 JAKMIP1Q96N16 626 aaKnown RBP8.98□□□□□ -0.97
VPS11-209ENST00000622309 RMI1Q9H9A7 625 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 MEFVO15553 781 aaPredicted RBP8.98□□□□□ -0.97
VPS11-209ENST00000622309 NAT2P11245 290 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 TOP1P11387 765 aaKnown RBP8.98□□□□□ -0.97
VPS11-209ENST00000622309 PRPHP41219 470 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 SMTNP53814 917 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 SLC8A3P57103 927 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 GNGT1P63211 74 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 SNX1Q13596 522 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 KARSQ15046 597 aaKnown RBP8.98□□□□□ -0.97
VPS11-209ENST00000622309 RASEFQ8IZ41 740 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 VIPAS39Q9H9C1 493 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 DDX20Q9UHI6 824 aaKnown RBP8.98□□□□□ -0.97
VPS11-209ENST00000622309 ZFYVE9O95405 1425 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 CBFA2T2O43439 604 aa8.98□□□□□ -0.97
VPS11-209ENST00000622309 COQ9O75208 318 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms