RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CCL15-CCL14A0A0B4J2E2 113 aa14.78□□□□□ -0.04
UPF3B-204ENST00000619445 SNAPC2Q13487 334 aa14.78□□□□□ -0.04
UPF3B-204ENST00000619445 MTX1Q13505 466 aa14.78□□□□□ -0.04
UPF3B-204ENST00000619445 CCL15Q16663 113 aa14.78□□□□□ -0.04
UPF3B-204ENST00000619445 OTOP1Q7RTM1 612 aa14.78□□□□□ -0.04
UPF3B-204ENST00000619445 WRNIP1Q96S55 665 aa14.78□□□□□ -0.04
UPF3B-204ENST00000619445 ZNF341Q9BYN7 854 aa14.78□□□□□ -0.04
UPF3B-204ENST00000619445 CACNB3P54284 484 aa14.77□□□□□ -0.04
UPF3B-204ENST00000619445 TAF1CQ15572 869 aaPredicted RBP14.77□□□□□ -0.04
UPF3B-204ENST00000619445 SPTY2D1Q68D10 685 aaPredicted RBP14.77□□□□□ -0.04
UPF3B-204ENST00000619445 OTUD5Q96G74 571 aa14.77□□□□□ -0.04
UPF3B-204ENST00000619445 PTPN18Q99952 460 aa14.77□□□□□ -0.04
UPF3B-204ENST00000619445 EFCC1Q9HA90 598 aa14.77□□□□□ -0.04
UPF3B-204ENST00000619445 DAGLAQ9Y4D2 1042 aa14.77□□□□□ -0.04
UPF3B-204ENST00000619445 SRGAP3O43295 1099 aa14.76□□□□□ -0.05
UPF3B-204ENST00000619445 PPATQ06203 517 aa14.76□□□□□ -0.05
UPF3B-204ENST00000619445 PPIL2Q13356 520 aa14.76□□□□□ -0.05
UPF3B-204ENST00000619445 MVPQ14764 893 aaKnown RBP14.76□□□□□ -0.05
UPF3B-204ENST00000619445 CDAN1Q8IWY9 1227 aa14.76□□□□□ -0.05
UPF3B-204ENST00000619445 BRI3BPQ8WY22 251 aa14.76□□□□□ -0.05
UPF3B-204ENST00000619445 MEIS3Q99687 375 aa14.76□□□□□ -0.05
UPF3B-204ENST00000619445 KIAA0100Q14667 2235 aaKnown RBP14.76□□□□□ -0.05
UPF3B-204ENST00000619445 TNRC18O15417 2968 aaPredicted RBP14.76□□□□□ -0.05
UPF3B-204ENST00000619445 PRDX5P30044 214 aa14.75□□□□□ -0.05
UPF3B-204ENST00000619445 CCDC102BQ68D86 513 aa14.75□□□□□ -0.05
UPF3B-204ENST00000619445 SNCAIPQ9Y6H5 919 aa14.75□□□□□ -0.05
UPF3B-204ENST00000619445 MYH2Q9UKX2 1941 aa14.75□□□□□ -0.05
UPF3B-204ENST00000619445 GNRH1P01148 92 aa14.74□□□□□ -0.05
UPF3B-204ENST00000619445 GNAI2P04899 355 aa14.74□□□□□ -0.05
UPF3B-204ENST00000619445 PHKA1P46020 1223 aa14.74□□□□□ -0.05
UPF3B-204ENST00000619445 KIF22Q14807 665 aa14.74□□□□□ -0.05
UPF3B-204ENST00000619445 CDC42EP5Q6NZY7 148 aa14.74□□□□□ -0.05
UPF3B-204ENST00000619445 ATF7IPQ6VMQ6 1270 aa14.74□□□□□ -0.05
UPF3B-204ENST00000619445 DZIP1Q86YF9 867 aaKnown RBP14.74□□□□□ -0.05
UPF3B-204ENST00000619445 CD99L2Q8TCZ2 262 aa14.74□□□□□ -0.05
UPF3B-204ENST00000619445 USP40Q9NVE5 1235 aa14.74□□□□□ -0.05
UPF3B-204ENST00000619445 ZNF112Q9UJU3 913 aa14.74□□□□□ -0.05
UPF3B-204ENST00000619445 PA2G4Q9UQ80 394 aaKnown RBP14.74□□□□□ -0.05
UPF3B-204ENST00000619445 PTPN22Q9Y2R2 807 aa14.74□□□□□ -0.05
UPF3B-204ENST00000619445 ENTPD3O75355 529 aa14.73□□□□□ -0.05
UPF3B-204ENST00000619445 MAP4K4O95819 1239 aaPredicted RBP14.73□□□□□ -0.05
UPF3B-204ENST00000619445 DIXDC1Q155Q3 683 aa14.73□□□□□ -0.05
UPF3B-204ENST00000619445 ZKSCAN4Q969J2 545 aaPredicted RBP14.73□□□□□ -0.05
UPF3B-204ENST00000619445 FAM163AQ96GL9 167 aaPredicted RBP14.73□□□□□ -0.05
UPF3B-204ENST00000619445 IDI2Q9BXS1 227 aa14.73□□□□□ -0.05
UPF3B-204ENST00000619445 A0A1B0GUL7 405 aa14.73□□□□□ -0.05
UPF3B-204ENST00000619445 IRF6O14896 467 aa14.73□□□□□ -0.05
UPF3B-204ENST00000619445 TLR2O60603 784 aa14.73□□□□□ -0.05
UPF3B-204ENST00000619445 NOL9Q5SY16 702 aaKnown RBP14.73□□□□□ -0.05
UPF3B-204ENST00000619445 PRPF38BQ5VTL8 546 aaKnown RBP14.73□□□□□ -0.05
UPF3B-204ENST00000619445 NBPF11Q86T75 865 aa14.73□□□□□ -0.05
UPF3B-204ENST00000619445 CNKSR2Q8WXI2 1034 aa14.73□□□□□ -0.05
UPF3B-204ENST00000619445 ARMC5Q96C12 935 aa14.73□□□□□ -0.05
UPF3B-204ENST00000619445 GAKO14976 1311 aa14.72□□□□□ -0.05
UPF3B-204ENST00000619445 RBBP6Q7Z6E9 1792 aaKnown RBP14.72□□□□□ -0.05
UPF3B-204ENST00000619445 TRIM27P14373 513 aa14.72□□□□□ -0.05
UPF3B-204ENST00000619445 PRMT2P55345 433 aa14.72□□□□□ -0.05
UPF3B-204ENST00000619445 GSTO1P78417 241 aa14.72□□□□□ -0.05
UPF3B-204ENST00000619445 TCP10Q12799 353 aa14.72□□□□□ -0.05
UPF3B-204ENST00000619445 G3BP1Q13283 466 aaKnown RBP eCLIP14.72□□□□□ -0.05
UPF3B-204ENST00000619445 RASGRF1Q13972 1273 aa14.72□□□□□ -0.05
UPF3B-204ENST00000619445 GORABQ5T7V8 394 aa14.72□□□□□ -0.05
UPF3B-204ENST00000619445 FAM43AQ8N2R8 423 aa14.72□□□□□ -0.05
UPF3B-204ENST00000619445 XAGE2Q96GT9 111 aa14.72□□□□□ -0.05
UPF3B-204ENST00000619445 ABCF2Q9UG63 623 aa14.72□□□□□ -0.05
UPF3B-204ENST00000619445 KCNH4Q9UQ05 1017 aa14.72□□□□□ -0.05
UPF3B-204ENST00000619445 CXCL11O14625 94 aa14.71□□□□□ -0.06
UPF3B-204ENST00000619445 IGSF3O75054 1194 aa14.71□□□□□ -0.06
UPF3B-204ENST00000619445 NPM3O75607 178 aaKnown RBP14.71□□□□□ -0.06
UPF3B-204ENST00000619445 LDHCP07864 332 aa14.71□□□□□ -0.06
UPF3B-204ENST00000619445 TIMM10P62072 90 aa14.71□□□□□ -0.06
UPF3B-204ENST00000619445 TFCP2Q12800 502 aa14.71□□□□□ -0.06
UPF3B-204ENST00000619445 ZKSCAN2Q63HK3 967 aa14.71□□□□□ -0.06
UPF3B-204ENST00000619445 ERICH6Q7L0X2 663 aa14.71□□□□□ -0.06
UPF3B-204ENST00000619445 MIGA2Q7L4E1 593 aa14.71□□□□□ -0.06
UPF3B-204ENST00000619445 ANKRD23Q86SG2 305 aa14.71□□□□□ -0.06
UPF3B-204ENST00000619445 FRAT1Q92837 279 aaPredicted RBP14.71□□□□□ -0.06
UPF3B-204ENST00000619445 FAM198AQ9UFP1 575 aa14.71□□□□□ -0.06
UPF3B-204ENST00000619445 DOCK2Q92608 1830 aa14.71□□□□□ -0.06
UPF3B-204ENST00000619445 BTBD19C9JJ37 291 aa14.7□□□□□ -0.06
UPF3B-204ENST00000619445 ADORA1P30542 326 aa14.7□□□□□ -0.06
UPF3B-204ENST00000619445 INPP5BP32019 993 aa14.7□□□□□ -0.06
UPF3B-204ENST00000619445 NFIAQ12857 509 aa14.7□□□□□ -0.06
UPF3B-204ENST00000619445 NEUROD6Q96NK8 337 aa14.7□□□□□ -0.06
UPF3B-204ENST00000619445 PICK1Q9NRD5 415 aa14.7□□□□□ -0.06
UPF3B-204ENST00000619445 SLC34A2O95436 690 aa14.69□□□□□ -0.06
UPF3B-204ENST00000619445 UQCRFS1P1P0C7P4 283 aa14.69□□□□□ -0.06
UPF3B-204ENST00000619445 RGS3P49796 1198 aa14.69□□□□□ -0.06
UPF3B-204ENST00000619445 SLC9C1Q4G0N8 1177 aa14.69□□□□□ -0.06
UPF3B-204ENST00000619445 ZSCAN29Q8IWY8 852 aaPredicted RBP14.69□□□□□ -0.06
UPF3B-204ENST00000619445 TMEM106CQ9BVX2 250 aa14.69□□□□□ -0.06
UPF3B-204ENST00000619445 GPR108Q9NPR9 543 aa14.69□□□□□ -0.06
UPF3B-204ENST00000619445 MROH7-TTC4A0A0A0MT08 1334 aa14.69□□□□□ -0.06
UPF3B-204ENST00000619445 HOXD10P28358 340 aa14.68□□□□□ -0.06
UPF3B-204ENST00000619445 LACTBP83111 547 aaPredicted RBP14.68□□□□□ -0.06
UPF3B-204ENST00000619445 MAP3K10Q02779 954 aa14.68□□□□□ -0.06
UPF3B-204ENST00000619445 FASTKD5Q7L8L6 764 aaKnown RBP14.68□□□□□ -0.06
UPF3B-204ENST00000619445 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.68□□□□□ -0.06
UPF3B-204ENST00000619445 PARK7Q99497 189 aaKnown RBP14.68□□□□□ -0.06
UPF3B-204ENST00000619445 RFX7Q2KHR2 1363 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms