RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 SLFN5Q08AF3 891 aa16.74■□□□□ 0.27
COL5A1-208ENST00000618395 SF3A3Q12874 501 aaKnown RBP eCLIP16.74■□□□□ 0.27
COL5A1-208ENST00000618395 KDM1AO60341 852 aa16.74■□□□□ 0.27
COL5A1-208ENST00000618395 RILPL1Q5EBL4 403 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 PDE11AQ9HCR9 933 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 ZNF711Q9Y462 761 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 KRT15P19012 456 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 IARSP41252 1262 aaKnown RBP16.73■□□□□ 0.27
COL5A1-208ENST00000618395 SH2D4AQ9H788 454 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 CUX1P39880 1505 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 PRKAR2BP31323 418 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 PHBP35232 272 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 NOP53Q9NZM5 478 aaKnown RBP16.73■□□□□ 0.27
COL5A1-208ENST00000618395 CCDC88BA6NC98 1476 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 MCM7P33993 719 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 NBPF9Q3BBW0 867 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 FNBP4Q8N3X1 1017 aaPredicted RBP16.73■□□□□ 0.27
COL5A1-208ENST00000618395 CHCHD3Q9NX63 227 aaKnown RBP16.73■□□□□ 0.27
COL5A1-208ENST00000618395 TMEM232C9JQI7 657 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 ZNF75DP51815 510 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 ARHGAP4P98171 946 aa16.73■□□□□ 0.27
COL5A1-208ENST00000618395 NBPF7P0C2Y1 421 aaPredicted RBP16.72■□□□□ 0.27
COL5A1-208ENST00000618395 MYL5Q02045 173 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 TADA2BQ86TJ2 420 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 PIP4K2CQ8TBX8 421 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 PAWRQ96IZ0 340 aaKnown RBP16.72■□□□□ 0.27
COL5A1-208ENST00000618395 YIPF3Q9GZM5 350 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 NBPF6Q5VWK0 638 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 NBPF5PQ86XG9 351 aaPredicted RBP16.72■□□□□ 0.27
COL5A1-208ENST00000618395 NBPF4Q96M43 638 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 IGSF22Q8N9C0 903 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 LRP2BPQ9P2M1 347 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 ZRANB2O95218 330 aaKnown RBP eCLIP16.72■□□□□ 0.27
COL5A1-208ENST00000618395 SKAP1Q86WV1 359 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 CTAGE3PQ8IX95 158 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 ORC3Q9UBD5 711 aaPredicted RBP16.72■□□□□ 0.27
COL5A1-208ENST00000618395 FLOT1O75955 427 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 ANGPTL2Q9UKU9 493 aa16.72■□□□□ 0.27
COL5A1-208ENST00000618395 E9PMD0 336 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 MYO1CO00159 1063 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 LMNAP02545 664 aaKnown RBP16.71■□□□□ 0.27
COL5A1-208ENST00000618395 ARMCX6Q7L4S7 300 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 SRGAP1Q7Z6B7 1085 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 WDR78Q5VTH9 848 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 POLE3Q9NRF9 147 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 KRT3P12035 628 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 DDX54Q8TDD1 881 aaKnown RBP16.71■□□□□ 0.27
COL5A1-208ENST00000618395 MIS12Q9H081 205 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 CAPRIN2Q6IMN6 1127 aaKnown RBP16.71■□□□□ 0.27
COL5A1-208ENST00000618395 CCDC82Q8N4S0 544 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 TXLNGQ9NUQ3 528 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 METAP2P50579 478 aaKnown RBP eCLIP16.71■□□□□ 0.27
COL5A1-208ENST00000618395 RWDD2BP57060 319 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 BICDL1Q6ZP65 573 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 HEATR3Q7Z4Q2 680 aa16.71■□□□□ 0.27
COL5A1-208ENST00000618395 RNF41Q9H4P4 317 aaPredicted RBP16.71■□□□□ 0.26
COL5A1-208ENST00000618395 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.7■□□□□ 0.26
COL5A1-208ENST00000618395 GNPTABQ3T906 1256 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 SCYL3Q8IZE3 742 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 EVI5LQ96CN4 794 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 FBXO2Q9UK22 296 aaPredicted RBP16.7■□□□□ 0.26
COL5A1-208ENST00000618395 TBCAO75347 108 aaKnown RBP16.7■□□□□ 0.26
COL5A1-208ENST00000618395 GJC1P36383 396 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 CCDC125Q86Z20 511 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 ORC6Q9Y5N6 252 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 USP16Q9Y5T5 823 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 IDH1O75874 414 aaKnown RBP16.7■□□□□ 0.26
COL5A1-208ENST00000618395 RAD51AP2Q09MP3 1159 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.7■□□□□ 0.26
COL5A1-208ENST00000618395 IQCDQ96DY2 449 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 IFIT3O14879 490 aaKnown RBP16.7■□□□□ 0.26
COL5A1-208ENST00000618395 CEP126Q9P2H0 1117 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 SMARCA5O60264 1052 aaPredicted RBP16.7■□□□□ 0.26
COL5A1-208ENST00000618395 S100BP04271 92 aaPredicted RBP16.7■□□□□ 0.26
COL5A1-208ENST00000618395 PPARDQ03181 441 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 SECISBP2LQ93073 1101 aaKnown RBP16.7■□□□□ 0.26
COL5A1-208ENST00000618395 CXorf56Q9H5V9 222 aa16.7■□□□□ 0.26
COL5A1-208ENST00000618395 IRX5P78411 483 aaPredicted RBP16.69■□□□□ 0.26
COL5A1-208ENST00000618395 P3H4Q92791 437 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 SAR1BQ9Y6B6 198 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 POTEB3A0JP26 581 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 ZNF449Q6P9G9 518 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 POTEBQ6S5H4 581 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 TEX11Q8IYF3 940 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 CCDC124Q96CT7 223 aaKnown RBP16.69■□□□□ 0.26
COL5A1-208ENST00000618395 ABCF2Q9UG63 623 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 MRPS15P82914 257 aaKnown RBP16.69■□□□□ 0.26
COL5A1-208ENST00000618395 APBA1Q02410 837 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 C20orf194Q5TEA3 1177 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 GABPB2Q8TAK5 448 aaPredicted RBP16.69■□□□□ 0.26
COL5A1-208ENST00000618395 TSC1Q92574 1164 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 CCDC138Q96M89 665 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 RNASELQ05823 741 aaKnown RBP16.69■□□□□ 0.26
COL5A1-208ENST00000618395 SPTLC2O15270 562 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 VWA3BQ502W6 1294 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 ATL3Q6DD88 541 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 ZC3H18Q86VM9 953 aaKnown RBP16.69■□□□□ 0.26
COL5A1-208ENST00000618395 RAPGEF2Q9Y4G8 1499 aa16.69■□□□□ 0.26
COL5A1-208ENST00000618395 INTS4Q96HW7 963 aaKnown RBP16.68■□□□□ 0.26
COL5A1-208ENST00000618395 TMED10P49755 219 aaKnown RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms