RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ATP5JP18859 108 aa16.46■□□□□ 0.23
LINC00540-202ENST00000616974 BTDP43251 543 aa16.46■□□□□ 0.23
LINC00540-202ENST00000616974 DYNLL1P63167 89 aaKnown RBP16.46■□□□□ 0.23
LINC00540-202ENST00000616974 RASA3Q14644 834 aa16.46■□□□□ 0.23
LINC00540-202ENST00000616974 RWDD1Q9H446 243 aaPredicted RBP16.46■□□□□ 0.23
LINC00540-202ENST00000616974 BAZ2AQ9UIF9 1905 aaKnown RBP16.46■□□□□ 0.22
LINC00540-202ENST00000616974 MROH7-TTC4A0A0A0MT08 1334 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 RHBDL3P58872 404 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 HDLBPQ00341 1268 aaKnown RBP16.45■□□□□ 0.22
LINC00540-202ENST00000616974 MIGA1Q8NAN2 632 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 GCC1Q96CN9 775 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 TEPSINQ96N21 525 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 FAM198AQ9UFP1 575 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 PITPNM2Q9BZ72 1349 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 SIPA1L1O43166 1804 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 PDE4AP27815 886 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 DNAJC5GQ8N7S2 189 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 MAGEB6Q8N7X4 407 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 ECHDC1Q9NTX5 307 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 PAG1Q9NWQ8 432 aa16.45■□□□□ 0.22
LINC00540-202ENST00000616974 AATFQ9NY61 560 aaKnown RBP eCLIP16.45■□□□□ 0.22
LINC00540-202ENST00000616974 TMEM88BA6NKF7 163 aa16.44■□□□□ 0.22
LINC00540-202ENST00000616974 HAUS7Q99871 368 aa16.44■□□□□ 0.22
LINC00540-202ENST00000616974 USP40Q9NVE5 1235 aa16.44■□□□□ 0.22
LINC00540-202ENST00000616974 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.44■□□□□ 0.22
LINC00540-202ENST00000616974 WDHD1O75717 1129 aaPredicted RBP16.43■□□□□ 0.22
LINC00540-202ENST00000616974 MX1P20591 662 aa16.43■□□□□ 0.22
LINC00540-202ENST00000616974 AAMPQ13685 434 aa16.43■□□□□ 0.22
LINC00540-202ENST00000616974 ZGPATQ8N5A5 531 aaKnown RBP16.43■□□□□ 0.22
LINC00540-202ENST00000616974 SH3RF3Q8TEJ3 882 aaPredicted RBP16.43■□□□□ 0.22
LINC00540-202ENST00000616974 MAST3O60307 1309 aa16.43■□□□□ 0.22
LINC00540-202ENST00000616974 RFX7Q2KHR2 1363 aa16.43■□□□□ 0.22
LINC00540-202ENST00000616974 MYH1P12882 1939 aa16.43■□□□□ 0.22
LINC00540-202ENST00000616974 NUCB1Q02818 461 aa16.43■□□□□ 0.22
LINC00540-202ENST00000616974 EVX2Q03828 476 aa16.43■□□□□ 0.22
LINC00540-202ENST00000616974 NAA16Q6N069 864 aaPredicted RBP16.43■□□□□ 0.22
LINC00540-202ENST00000616974 SH3BP5LQ7L8J4 393 aa16.43■□□□□ 0.22
LINC00540-202ENST00000616974 MRIQ9BWK5 157 aa16.43■□□□□ 0.22
LINC00540-202ENST00000616974 BRCA2P51587 3418 aa16.43■□□□□ 0.22
LINC00540-202ENST00000616974 GPR75-ASB3A0A0A6YYF3 556 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 GRM1Q13255 1194 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 PICALMQ13492 652 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 SLC4A8Q2Y0W8 1093 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 SAPCD2Q86UD0 394 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 CHD1LQ86WJ1 897 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 ZIC5Q96T25 663 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 CREBZFQ9NS37 354 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 ABT1Q9ULW3 272 aaKnown RBP16.42■□□□□ 0.22
LINC00540-202ENST00000616974 HTTP42858 3142 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 PAPPA2Q9BXP8 1791 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 MYO1BO43795 1136 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 CYP7A1P22680 504 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 PDE1AP54750 535 aa16.42■□□□□ 0.22
LINC00540-202ENST00000616974 SPTY2D1Q68D10 685 aaPredicted RBP16.42■□□□□ 0.22
LINC00540-202ENST00000616974 APOBEC3FQ8IUX4 373 aaKnown RBP16.42■□□□□ 0.22
LINC00540-202ENST00000616974 TCRBV5S4A2TA0A5A2 114 aa16.41■□□□□ 0.22
LINC00540-202ENST00000616974 UBE2Q2LH0YL09 131 aa16.41■□□□□ 0.22
LINC00540-202ENST00000616974 PDE6AP16499 860 aa16.41■□□□□ 0.22
LINC00540-202ENST00000616974 RGS3P49796 1198 aa16.41■□□□□ 0.22
LINC00540-202ENST00000616974 SLC9C2Q5TAH2 1124 aa16.41■□□□□ 0.22
LINC00540-202ENST00000616974 CYP4F22Q6NT55 531 aa16.41■□□□□ 0.22
LINC00540-202ENST00000616974 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.41■□□□□ 0.22
LINC00540-202ENST00000616974 FAM163AQ96GL9 167 aaPredicted RBP16.41■□□□□ 0.22
LINC00540-202ENST00000616974 PLEKHM2Q8IWE5 1019 aa16.4■□□□□ 0.22
LINC00540-202ENST00000616974 GBA2Q9HCG7 927 aaPredicted RBP16.4■□□□□ 0.22
LINC00540-202ENST00000616974 ZNF532Q9HCE3 1301 aa16.4■□□□□ 0.22
LINC00540-202ENST00000616974 DDTLA6NHG4 134 aaPredicted RBP16.4■□□□□ 0.22
LINC00540-202ENST00000616974 SMIM22K7EJ46 135 aa16.4■□□□□ 0.22
LINC00540-202ENST00000616974 FAM196BA6NMK8 535 aa16.39■□□□□ 0.21
LINC00540-202ENST00000616974 MMP14P50281 582 aa16.39■□□□□ 0.21
LINC00540-202ENST00000616974 MIGA2Q7L4E1 593 aa16.39■□□□□ 0.21
LINC00540-202ENST00000616974 CENPBP07199 599 aaPredicted RBP16.39■□□□□ 0.21
LINC00540-202ENST00000616974 HUNKP57058 714 aa16.39■□□□□ 0.21
LINC00540-202ENST00000616974 CLMNQ96JQ2 1002 aa16.39■□□□□ 0.21
LINC00540-202ENST00000616974 TLL2Q9Y6L7 1015 aa16.39■□□□□ 0.21
LINC00540-202ENST00000616974 VEGFBP49765 207 aa16.38■□□□□ 0.21
LINC00540-202ENST00000616974 MAPKAPK5Q8IW41 473 aa16.38■□□□□ 0.21
LINC00540-202ENST00000616974 SEC62Q99442 399 aaKnown RBP16.38■□□□□ 0.21
LINC00540-202ENST00000616974 RIOK1Q9BRS2 568 aaKnown RBP16.38■□□□□ 0.21
LINC00540-202ENST00000616974 PUS7LQ9H0K6 701 aaKnown RBP16.38■□□□□ 0.21
LINC00540-202ENST00000616974 NAV1Q8NEY1 1877 aa16.38■□□□□ 0.21
LINC00540-202ENST00000616974 AOC2O75106 756 aa16.37■□□□□ 0.21
LINC00540-202ENST00000616974 LCORLQ8N3X6 602 aa16.37■□□□□ 0.21
LINC00540-202ENST00000616974 TGFBRAP1Q8WUH2 860 aa16.37■□□□□ 0.21
LINC00540-202ENST00000616974 DDX60LQ5H9U9 1706 aaKnown RBP16.37■□□□□ 0.21
LINC00540-202ENST00000616974 TTC41PQ6P2S7 1318 aa16.37■□□□□ 0.21
LINC00540-202ENST00000616974 PRKAB2O43741 272 aa16.37■□□□□ 0.21
LINC00540-202ENST00000616974 ADD2P35612 726 aa16.37■□□□□ 0.21
LINC00540-202ENST00000616974 MAP3K12Q12852 859 aa16.37■□□□□ 0.21
LINC00540-202ENST00000616974 PAXIP1Q6ZW49 1069 aaPredicted RBP16.37■□□□□ 0.21
LINC00540-202ENST00000616974 TEX11Q8IYF3 940 aa16.37■□□□□ 0.21
LINC00540-202ENST00000616974 CNKSR2Q8WXI2 1034 aa16.37■□□□□ 0.21
LINC00540-202ENST00000616974 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.37■□□□□ 0.21
LINC00540-202ENST00000616974 STAP2Q9UGK3 403 aa16.37■□□□□ 0.21
LINC00540-202ENST00000616974 ANGEL1Q9UNK9 670 aaKnown RBP16.37■□□□□ 0.21
LINC00540-202ENST00000616974 ATRNL1Q5VV63 1379 aa16.36■□□□□ 0.21
LINC00540-202ENST00000616974 USP2O75604 605 aaPredicted RBP16.36■□□□□ 0.21
LINC00540-202ENST00000616974 MKRN3Q13064 507 aaKnown RBP16.36■□□□□ 0.21
LINC00540-202ENST00000616974 TTLL12Q14166 644 aaPredicted RBP16.36■□□□□ 0.21
LINC00540-202ENST00000616974 ARMT1Q9H993 441 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms