RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 ERO1BQ86YB8 467 aa23.59■■□□□ 1.37
CDX1-202ENST00000616154 CEP126Q9P2H0 1117 aa23.59■■□□□ 1.37
CDX1-202ENST00000616154 KIAA0100Q14667 2235 aaKnown RBP23.58■■□□□ 1.37
CDX1-202ENST00000616154 IL15P40933 162 aaPredicted RBP23.58■■□□□ 1.36
CDX1-202ENST00000616154 FAM43AQ8N2R8 423 aa23.58■■□□□ 1.36
CDX1-202ENST00000616154 ZFYVE28Q9HCC9 887 aa23.58■■□□□ 1.36
CDX1-202ENST00000616154 GNL3LQ9NVN8 582 aaKnown RBP23.58■■□□□ 1.36
CDX1-202ENST00000616154 DAGLAQ9Y4D2 1042 aa23.58■■□□□ 1.36
CDX1-202ENST00000616154 LRRFIP2Q9Y608 721 aaKnown RBP23.58■■□□□ 1.36
CDX1-202ENST00000616154 CENPFP49454 3210 aa23.57■■□□□ 1.36
CDX1-202ENST00000616154 ZBTB22O15209 634 aa23.57■■□□□ 1.36
CDX1-202ENST00000616154 CAP1Q01518 475 aa23.57■■□□□ 1.36
CDX1-202ENST00000616154 FAM151AQ8WW52 585 aa23.57■■□□□ 1.36
CDX1-202ENST00000616154 ZKSCAN4Q969J2 545 aaPredicted RBP23.57■■□□□ 1.36
CDX1-202ENST00000616154 ZNF341Q9BYN7 854 aa23.57■■□□□ 1.36
CDX1-202ENST00000616154 SALL1Q9NSC2 1324 aa23.57■■□□□ 1.36
CDX1-202ENST00000616154 SEMA3EO15041 775 aa23.56■■□□□ 1.36
CDX1-202ENST00000616154 CETPP11597 493 aa23.56■■□□□ 1.36
CDX1-202ENST00000616154 PPIL2Q13356 520 aa23.56■■□□□ 1.36
CDX1-202ENST00000616154 DIXDC1Q155Q3 683 aa23.56■■□□□ 1.36
CDX1-202ENST00000616154 ARMC5Q96C12 935 aa23.56■■□□□ 1.36
CDX1-202ENST00000616154 ZCCHC17Q9NP64 241 aaKnown RBP23.56■■□□□ 1.36
CDX1-202ENST00000616154 COPRSQ9NQ92 184 aa23.56■■□□□ 1.36
CDX1-202ENST00000616154 MYH2Q9UKX2 1941 aa23.56■■□□□ 1.36
CDX1-202ENST00000616154 PRDX5P30044 214 aa23.55■■□□□ 1.36
CDX1-202ENST00000616154 CDC42EP5Q6NZY7 148 aa23.55■■□□□ 1.36
CDX1-202ENST00000616154 DENND2AQ9ULE3 1009 aa23.55■■□□□ 1.36
CDX1-202ENST00000616154 IRF6O14896 467 aa23.54■■□□□ 1.36
CDX1-202ENST00000616154 LDHBP07195 334 aaKnown RBP23.54■■□□□ 1.36
CDX1-202ENST00000616154 SNAPC2Q13487 334 aa23.54■■□□□ 1.36
CDX1-202ENST00000616154 MEIS3Q99687 375 aa23.54■■□□□ 1.36
CDX1-202ENST00000616154 PA2G4Q9UQ80 394 aaKnown RBP23.54■■□□□ 1.36
CDX1-202ENST00000616154 DOCK2Q92608 1830 aa23.53■■□□□ 1.36
CDX1-202ENST00000616154 IPO8O15397 1037 aaKnown RBP23.53■■□□□ 1.36
CDX1-202ENST00000616154 WDHD1O75717 1129 aaPredicted RBP23.53■■□□□ 1.36
CDX1-202ENST00000616154 TRIM27P14373 513 aa23.53■■□□□ 1.36
CDX1-202ENST00000616154 PHKA1P46020 1223 aa23.53■■□□□ 1.36
CDX1-202ENST00000616154 PPATQ06203 517 aa23.53■■□□□ 1.36
CDX1-202ENST00000616154 ARHGEF6Q15052 776 aa23.53■■□□□ 1.36
CDX1-202ENST00000616154 MIGA2Q7L4E1 593 aa23.53■■□□□ 1.36
CDX1-202ENST00000616154 BTBD19C9JJ37 291 aa23.52■■□□□ 1.36
CDX1-202ENST00000616154 BCAR3O75815 825 aa23.52■■□□□ 1.36
CDX1-202ENST00000616154 INPP5BP32019 993 aa23.52■■□□□ 1.36
CDX1-202ENST00000616154 NFIAQ12857 509 aa23.52■■□□□ 1.36
CDX1-202ENST00000616154 ATF7IPQ6VMQ6 1270 aa23.52■■□□□ 1.36
CDX1-202ENST00000616154 ZNF112Q9UJU3 913 aa23.52■■□□□ 1.36
CDX1-202ENST00000616154 ZSWIM8A7E2V4 1837 aa23.51■■□□□ 1.35
CDX1-202ENST00000616154 POTEFA5A3E0 1075 aa23.51■■□□□ 1.35
CDX1-202ENST00000616154 TLR2O60603 784 aa23.51■■□□□ 1.35
CDX1-202ENST00000616154 ADORA1P30542 326 aa23.51■■□□□ 1.35
CDX1-202ENST00000616154 TCP10Q12799 353 aa23.51■■□□□ 1.35
CDX1-202ENST00000616154 CCDC102BQ68D86 513 aa23.5■■□□□ 1.35
CDX1-202ENST00000616154 ZGPATQ8N5A5 531 aaKnown RBP23.5■■□□□ 1.35
CDX1-202ENST00000616154 USP40Q9NVE5 1235 aa23.5■■□□□ 1.35
CDX1-202ENST00000616154 FAM198AQ9UFP1 575 aa23.5■■□□□ 1.35
CDX1-202ENST00000616154 BRCA2P51587 3418 aa23.49■■□□□ 1.35
CDX1-202ENST00000616154 PDS5AQ29RF7 1337 aaKnown RBP23.49■■□□□ 1.35
CDX1-202ENST00000616154 GAKO14976 1311 aa23.48■■□□□ 1.35
CDX1-202ENST00000616154 MKI67P46013 3256 aaKnown RBP23.48■■□□□ 1.35
CDX1-202ENST00000616154 GNAI3P08754 354 aa23.48■■□□□ 1.35
CDX1-202ENST00000616154 MTX1Q13505 466 aa23.48■■□□□ 1.35
CDX1-202ENST00000616154 NOL9Q5SY16 702 aaKnown RBP23.48■■□□□ 1.35
CDX1-202ENST00000616154 KCNH4Q9UQ05 1017 aa23.48■■□□□ 1.35
CDX1-202ENST00000616154 RASGRF1Q13972 1273 aa23.47■■□□□ 1.35
CDX1-202ENST00000616154 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.47■■□□□ 1.35
CDX1-202ENST00000616154 ZNF333Q96JL9 665 aa23.47■■□□□ 1.35
CDX1-202ENST00000616154 PTCH2Q9Y6C5 1203 aa23.47■■□□□ 1.35
CDX1-202ENST00000616154 RFX7Q2KHR2 1363 aa23.47■■□□□ 1.35
CDX1-202ENST00000616154 ATRNL1Q5VV63 1379 aa23.47■■□□□ 1.35
CDX1-202ENST00000616154 SRGAP3O43295 1099 aa23.46■■□□□ 1.35
CDX1-202ENST00000616154 LACTBP83111 547 aaPredicted RBP23.46■■□□□ 1.35
CDX1-202ENST00000616154 ANKRD23Q86SG2 305 aa23.46■■□□□ 1.35
CDX1-202ENST00000616154 IDI2Q9BXS1 227 aa23.46■■□□□ 1.35
CDX1-202ENST00000616154 ENTPD3O75355 529 aa23.45■■□□□ 1.34
CDX1-202ENST00000616154 TIMM10P62072 90 aa23.45■■□□□ 1.34
CDX1-202ENST00000616154 KIF22Q14807 665 aa23.45■■□□□ 1.34
CDX1-202ENST00000616154 SLC9C1Q4G0N8 1177 aa23.45■■□□□ 1.34
CDX1-202ENST00000616154 ZFPM1Q8IX07 1006 aa23.45■■□□□ 1.34
CDX1-202ENST00000616154 AKAP2Q9Y2D5 859 aa23.45■■□□□ 1.34
CDX1-202ENST00000616154 A0A1B0GUL7 405 aa23.44■■□□□ 1.34
CDX1-202ENST00000616154 GNRH1P01148 92 aa23.44■■□□□ 1.34
CDX1-202ENST00000616154 RGS3P49796 1198 aa23.44■■□□□ 1.34
CDX1-202ENST00000616154 ZKSCAN2Q63HK3 967 aa23.44■■□□□ 1.34
CDX1-202ENST00000616154 NBPF11Q86T75 865 aa23.44■■□□□ 1.34
CDX1-202ENST00000616154 DZIP1Q86YF9 867 aaKnown RBP23.44■■□□□ 1.34
CDX1-202ENST00000616154 XAGE2Q96GT9 111 aa23.44■■□□□ 1.34
CDX1-202ENST00000616154 ARHGAP39Q9C0H5 1083 aa23.44■■□□□ 1.34
CDX1-202ENST00000616154 TNNQ9UQP3 1299 aa23.44■■□□□ 1.34
CDX1-202ENST00000616154 TFCP2Q12800 502 aa23.43■■□□□ 1.34
CDX1-202ENST00000616154 MOGSQ13724 837 aa23.43■■□□□ 1.34
CDX1-202ENST00000616154 MVPQ14764 893 aaKnown RBP23.43■■□□□ 1.34
CDX1-202ENST00000616154 SPTY2D1Q68D10 685 aaPredicted RBP23.43■■□□□ 1.34
CDX1-202ENST00000616154 C17orf99Q6UX52 265 aa23.43■■□□□ 1.34
CDX1-202ENST00000616154 SLF2Q8IX21 1173 aa23.43■■□□□ 1.34
CDX1-202ENST00000616154 FRAT1Q92837 279 aaPredicted RBP23.43■■□□□ 1.34
CDX1-202ENST00000616154 FAM163AQ96GL9 167 aaPredicted RBP23.43■■□□□ 1.34
CDX1-202ENST00000616154 ABCF2Q9UG63 623 aa23.43■■□□□ 1.34
CDX1-202ENST00000616154 ADGRA2Q96PE1 1338 aa23.43■■□□□ 1.34
CDX1-202ENST00000616154 PTPRFP10586 1907 aa23.42■■□□□ 1.34
CDX1-202ENST00000616154 PDHXO00330 501 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms