RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 ZNF157P51786 506 aaPredicted RBP7.02□□□□□ -1.29
CPNE3-208ENST00000614678 HDAC9Q9UKV0 1011 aa7.02□□□□□ -1.29
CPNE3-208ENST00000614678 MYO3BQ8WXR4 1341 aa7.02□□□□□ -1.29
CPNE3-208ENST00000614678 OTOFQ9HC10 1997 aa7.02□□□□□ -1.29
CPNE3-208ENST00000614678 DDTLA6NHG4 134 aaPredicted RBP7.01□□□□□ -1.29
CPNE3-208ENST00000614678 USP2O75604 605 aaPredicted RBP7.01□□□□□ -1.29
CPNE3-208ENST00000614678 ARID4AP29374 1257 aaPredicted RBP7.01□□□□□ -1.29
CPNE3-208ENST00000614678 CAP1Q01518 475 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 TEKT1Q969V4 418 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 NSUN4Q96CB9 384 aaKnown RBP7.01□□□□□ -1.29
CPNE3-208ENST00000614678 AATFQ9NY61 560 aaKnown RBP eCLIP7.01□□□□□ -1.29
CPNE3-208ENST00000614678 SERPINA10Q9UK55 444 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 RRP1BQ14684 758 aaKnown RBP7.01□□□□□ -1.29
CPNE3-208ENST00000614678 TTC39AQ5SRH9 613 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 B4GALNT3Q6L9W6 998 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 ZDHHC15Q96MV8 337 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 DNAJC2Q99543 621 aaKnown RBP7.01□□□□□ -1.29
CPNE3-208ENST00000614678 RAI14Q9P0K7 980 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 WDHD1O75717 1129 aaPredicted RBP7.01□□□□□ -1.29
CPNE3-208ENST00000614678 BTDP43251 543 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 RHBDL3P58872 404 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 SH3RF3Q8TEJ3 882 aaPredicted RBP7.01□□□□□ -1.29
CPNE3-208ENST00000614678 USP40Q9NVE5 1235 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 FBXO3Q9UK99 471 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 SZT2Q5T011 3432 aa7.01□□□□□ -1.29
CPNE3-208ENST00000614678 INPP5BP32019 993 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 LBX1P52954 281 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 MTMR14Q8NCE2 650 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 DENND2AQ9ULE3 1009 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 IDH1O75874 414 aaKnown RBP7□□□□□ -1.29
CPNE3-208ENST00000614678 JAG1P78504 1218 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 KIF23Q02241 960 aaPredicted RBP7□□□□□ -1.29
CPNE3-208ENST00000614678 AKAP2Q9Y2D5 859 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 GOLIM4O00461 696 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 RGMBQ6NW40 437 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 PPP1R3FQ6ZSY5 799 aaPredicted RBP7□□□□□ -1.29
CPNE3-208ENST00000614678 DZIP1Q86YF9 867 aaKnown RBP7□□□□□ -1.29
CPNE3-208ENST00000614678 RASAL3Q86YV0 1011 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 RPAP2Q8IXW5 612 aaPredicted RBP7□□□□□ -1.29
CPNE3-208ENST00000614678 WDR66Q8TBY9 1149 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 CSRNP1Q96S65 589 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 ELP3Q9H9T3 547 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 LRP2BPQ9P2M1 347 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 TNRC18O15417 2968 aaPredicted RBP7□□□□□ -1.29
CPNE3-208ENST00000614678 RGS3P49796 1198 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 FKBP1AP62942 108 aaKnown RBP7□□□□□ -1.29
CPNE3-208ENST00000614678 C2orf69Q8N8R5 385 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 WBP1LQ9NX94 342 aa7□□□□□ -1.29
CPNE3-208ENST00000614678 CDK5RAP2Q96SN8 1893 aa6.99□□□□□ -1.29
CPNE3-208ENST00000614678 PITPNM2Q9BZ72 1349 aa6.99□□□□□ -1.29
CPNE3-208ENST00000614678 TRPA1O75762 1119 aa6.99□□□□□ -1.29
CPNE3-208ENST00000614678 MAGEB6Q8N7X4 407 aa6.99□□□□□ -1.29
CPNE3-208ENST00000614678 TBC1D22AQ8WUA7 517 aa6.99□□□□□ -1.29
CPNE3-208ENST00000614678 SAP30BPQ9UHR5 308 aaKnown RBP6.99□□□□□ -1.29
CPNE3-208ENST00000614678 ERICH6Q7L0X2 663 aa6.99□□□□□ -1.29
CPNE3-208ENST00000614678 MAPKAPK5Q8IW41 473 aa6.99□□□□□ -1.29
CPNE3-208ENST00000614678 DCTPP1Q9H773 170 aa6.99□□□□□ -1.29
CPNE3-208ENST00000614678 GNL3LQ9NVN8 582 aaKnown RBP6.99□□□□□ -1.29
CPNE3-208ENST00000614678 PRKAB2O43741 272 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 PEX10O60683 326 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 TBC1D8O95759 1140 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 VGLL4Q14135 290 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 HHIPL2Q6UWX4 724 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 PTPN18Q99952 460 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 PALD1Q9ULE6 856 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 MROH7-TTC4A0A0A0MT08 1334 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 GAKO14976 1311 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 SALL1Q9NSC2 1324 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 MYO1BO43795 1136 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 CCDC158Q5M9N0 1113 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 STK11IPQ8N1F8 1099 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 HDAC5Q9UQL6 1122 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 LDLRAD1Q5T700 205 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 APOBEC3FQ8IUX4 373 aaKnown RBP6.98□□□□□ -1.29
CPNE3-208ENST00000614678 TGFBRAP1Q8WUH2 860 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 SDR42E1Q8WUS8 393 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 KIF1BPQ96EK5 621 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 SEC62Q99442 399 aaKnown RBP6.98□□□□□ -1.29
CPNE3-208ENST00000614678 SIPA1L1O43166 1804 aa6.98□□□□□ -1.29
CPNE3-208ENST00000614678 CYP2D7A0A087X1C5 515 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 IGF2BP3O00425 579 aaKnown RBP eCLIP6.97□□□□□ -1.29
CPNE3-208ENST00000614678 CAPN15O75808 1086 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 SLC10A3P09131 477 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.97□□□□□ -1.29
CPNE3-208ENST00000614678 WRNIP1Q96S55 665 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 LRRCC1Q9C099 1032 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 LNPKQ9C0E8 428 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 DNAJC18Q9H819 358 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 GPR108Q9NPR9 543 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 IFIT2P09913 472 aaKnown RBP6.97□□□□□ -1.29
CPNE3-208ENST00000614678 ANKRD45Q5TZF3 282 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 CLASRPQ8N2M8 674 aaKnown RBP6.97□□□□□ -1.29
CPNE3-208ENST00000614678 OTUD5Q96G74 571 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 RFX7Q2KHR2 1363 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 ATRNL1Q5VV63 1379 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 ZSWIM8A7E2V4 1837 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 PAPPA2Q9BXP8 1791 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 GPR75-ASB3A0A0A6YYF3 556 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 CYP2D6P10635 497 aa6.97□□□□□ -1.29
CPNE3-208ENST00000614678 CYP7A1P22680 504 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms