RNA–Protein interactions for RNA: ENST00000612839.1

CCL3L3-201, Transcript of C-C motif chemokine ligand 3 like 3, humanhuman

TSL 1 (best)

Gene CCL3L3, Length 1,458 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL3L3-201ENST00000612839 ERICH6Q7L0X2 663 aa13.84□□□□□ -0.19
CCL3L3-201ENST00000612839 ZNF384Q8TF68 577 aa13.84□□□□□ -0.19
CCL3L3-201ENST00000612839 GCC1Q96CN9 775 aa13.84□□□□□ -0.19
CCL3L3-201ENST00000612839 TDRD3Q9H7E2 651 aaKnown RBP13.84□□□□□ -0.19
CCL3L3-201ENST00000612839 NDUFB9Q9Y6M9 179 aa13.84□□□□□ -0.19
CCL3L3-201ENST00000612839 DOCK2Q92608 1830 aa13.84□□□□□ -0.19
CCL3L3-201ENST00000612839 C7P10643 843 aa13.83□□□□□ -0.2
CCL3L3-201ENST00000612839 MECOMQ03112 1051 aa13.83□□□□□ -0.2
CCL3L3-201ENST00000612839 DZIP1Q86YF9 867 aaKnown RBP13.83□□□□□ -0.2
CCL3L3-201ENST00000612839 APOBEC3FQ8IUX4 373 aaKnown RBP13.83□□□□□ -0.2
CCL3L3-201ENST00000612839 RWDD1Q9H446 243 aaPredicted RBP13.83□□□□□ -0.2
CCL3L3-201ENST00000612839 DAGLAQ9Y4D2 1042 aa13.83□□□□□ -0.2
CCL3L3-201ENST00000612839 MAST2Q6P0Q8 1798 aa13.83□□□□□ -0.2
CCL3L3-201ENST00000612839 TMEM88BA6NKF7 163 aa13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 SMC5Q8IY18 1101 aa13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 NSUN4Q96CB9 384 aaKnown RBP13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 CDCA5Q96FF9 252 aa13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 KIF12Q96FN5 646 aa13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 ANTXR1Q9H6X2 564 aa13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 PIH1D3Q9NQM4 214 aaKnown RBP13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 LRP2BPQ9P2M1 347 aa13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 ZNF70Q9UC06 446 aaPredicted RBP13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 CEP350Q5VT06 3117 aa13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 GAKO14976 1311 aa13.82□□□□□ -0.2
CCL3L3-201ENST00000612839 CELF2O95319 508 aaKnown RBP13.81□□□□□ -0.2
CCL3L3-201ENST00000612839 ATP5JP18859 108 aa13.81□□□□□ -0.2
CCL3L3-201ENST00000612839 PRAMEF18Q5VWM3 479 aa13.81□□□□□ -0.2
CCL3L3-201ENST00000612839 FAM163AQ96GL9 167 aaPredicted RBP13.81□□□□□ -0.2
CCL3L3-201ENST00000612839 DEFB129Q9H1M3 183 aa13.81□□□□□ -0.2
CCL3L3-201ENST00000612839 ZNF408Q9H9D4 720 aa13.81□□□□□ -0.2
CCL3L3-201ENST00000612839 VEZTQ9HBM0 779 aa13.81□□□□□ -0.2
CCL3L3-201ENST00000612839 RAI14Q9P0K7 980 aa13.81□□□□□ -0.2
CCL3L3-201ENST00000612839 ANKRD45Q5TZF3 282 aa13.8□□□□□ -0.2
CCL3L3-201ENST00000612839 BOLA2Q9H3K6 86 aa13.8□□□□□ -0.2
CCL3L3-201ENST00000612839 ECHDC1Q9NTX5 307 aa13.8□□□□□ -0.2
CCL3L3-201ENST00000612839 MROH7-TTC4A0A0A0MT08 1334 aa13.8□□□□□ -0.2
CCL3L3-201ENST00000612839 CACNB3P54284 484 aa13.8□□□□□ -0.2
CCL3L3-201ENST00000612839 CDC42EP5Q6NZY7 148 aa13.8□□□□□ -0.2
CCL3L3-201ENST00000612839 SLF2Q8IX21 1173 aa13.8□□□□□ -0.2
CCL3L3-201ENST00000612839 OTUD7AQ8TE49 926 aaPredicted RBP13.8□□□□□ -0.2
CCL3L3-201ENST00000612839 DNAJC2Q99543 621 aaKnown RBP13.8□□□□□ -0.2
CCL3L3-201ENST00000612839 SALL3Q9BXA9 1300 aa13.79□□□□□ -0.2
CCL3L3-201ENST00000612839 TCP10L2B9ZVM9 353 aa13.79□□□□□ -0.2
CCL3L3-201ENST00000612839 IDH1O75874 414 aaKnown RBP13.79□□□□□ -0.2
CCL3L3-201ENST00000612839 RASA3Q14644 834 aa13.79□□□□□ -0.2
CCL3L3-201ENST00000612839 TSHZ3Q63HK5 1081 aa13.79□□□□□ -0.2
CCL3L3-201ENST00000612839 EDC3Q96F86 508 aaKnown RBP13.79□□□□□ -0.2
CCL3L3-201ENST00000612839 HAUS7Q99871 368 aa13.79□□□□□ -0.2
CCL3L3-201ENST00000612839 PPP2R3BQ9Y5P8 575 aa13.79□□□□□ -0.2
CCL3L3-201ENST00000612839 GPR75-ASB3A0A0A6YYF3 556 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 GOLIM4O00461 696 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 IGSF3O75054 1194 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 BTDP43251 543 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 GSTO1P78417 241 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 TNFAIP1Q13829 316 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 TTF1Q15361 905 aaPredicted RBP13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 B4GALNT3Q6L9W6 998 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 NAA16Q6N069 864 aaPredicted RBP13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 ADGRA1Q86SQ6 560 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 SAPCD2Q86UD0 394 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 DNAJC5GQ8N7S2 189 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 USP40Q9NVE5 1235 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 TLL2Q9Y6L7 1015 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 CNTNAP1P78357 1384 aa13.78□□□□□ -0.2
CCL3L3-201ENST00000612839 SSC5DA1L4H1 1573 aa13.77□□□□□ -0.2
CCL3L3-201ENST00000612839 LDHCP07864 332 aa13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 FKBP1CQ5VVH2 108 aa13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 CDAN1Q8IWY9 1227 aa13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 RASEFQ8IZ41 740 aa13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 GPATCH3Q96I76 525 aa13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 TEPSINQ96N21 525 aa13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 GBA2Q9HCG7 927 aaPredicted RBP13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 PAG1Q9NWQ8 432 aa13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 TMOD2Q9NZR1 351 aa13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 ZBTB47Q9UFB7 747 aaPredicted RBP13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 ABT1Q9ULW3 272 aaKnown RBP13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 TTC41PQ6P2S7 1318 aa13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 PAPPA2Q9BXP8 1791 aa13.77□□□□□ -0.21
CCL3L3-201ENST00000612839 MYH7P12883 1935 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 RFX7Q2KHR2 1363 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 RASSF10A6NK89 507 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 MX1P20591 662 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 TNNI2P48788 182 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 ATN1P54259 1190 aaPredicted RBP13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 RHBDL3P58872 404 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 NUCB1Q02818 461 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 MAP3K12Q12852 859 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 NFIAQ12857 509 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 NBPF12Q5TAG4 269 aaPredicted RBP13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 FAM83AQ86UY5 434 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 MAGEB6Q8N7X4 407 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 PI4K2BQ8TCG2 481 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 LNPKQ9C0E8 428 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 TMEM39BQ9GZU3 492 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 CDK5RAP2Q96SN8 1893 aa13.76□□□□□ -0.21
CCL3L3-201ENST00000612839 WDHD1O75717 1129 aaPredicted RBP13.75□□□□□ -0.21
CCL3L3-201ENST00000612839 CHD1LQ86WJ1 897 aa13.75□□□□□ -0.21
CCL3L3-201ENST00000612839 C2orf69Q8N8R5 385 aa13.75□□□□□ -0.21
CCL3L3-201ENST00000612839 IDI2Q9BXS1 227 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms