RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CNTN3Q9P232 1028 aa7.44□□□□□ -1.22
LINC00540-201ENST00000611481 ADGRE2Q9UHX3 823 aa7.44□□□□□ -1.22
LINC00540-201ENST00000611481 SALL4Q9UJQ4 1053 aa7.44□□□□□ -1.22
LINC00540-201ENST00000611481 DNMT1P26358 1616 aaKnown RBP7.44□□□□□ -1.22
LINC00540-201ENST00000611481 ABCA6Q8N139 1617 aa7.44□□□□□ -1.22
LINC00540-201ENST00000611481 A2ML1A8K2U0 1454 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 SYNMO15061 1565 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 RAPGEF6Q8TEU7 1601 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 MEGF11A6BM72 1044 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 PDE2AO00408 941 aaPredicted RBP7.43□□□□□ -1.22
LINC00540-201ENST00000611481 CES1P23141 567 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 ANKLE2Q86XL3 938 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 SLC7A3Q8WY07 619 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 CLP1Q92989 425 aaKnown RBP7.43□□□□□ -1.22
LINC00540-201ENST00000611481 MFSD14AQ96MC6 490 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 ATG3Q9NT62 314 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 DZANK1Q9NVP4 752 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 CTTNBP2Q8WZ74 1663 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 JCADQ9P266 1359 aa7.43□□□□□ -1.22
LINC00540-201ENST00000611481 NPHP4O75161 1426 aaPredicted RBP7.43□□□□□ -1.22
LINC00540-201ENST00000611481 LRP6O75581 1613 aa7.42□□□□□ -1.22
LINC00540-201ENST00000611481 NFKBIEO00221 500 aa7.42□□□□□ -1.22
LINC00540-201ENST00000611481 ATG7O95352 703 aa7.42□□□□□ -1.22
LINC00540-201ENST00000611481 MAP4P27816 1152 aaKnown RBP7.42□□□□□ -1.22
LINC00540-201ENST00000611481 C19orf57Q0VDD7 668 aa7.42□□□□□ -1.22
LINC00540-201ENST00000611481 EFCAB2Q5VUJ9 269 aa7.42□□□□□ -1.22
LINC00540-201ENST00000611481 XKR5Q6UX68 686 aa7.42□□□□□ -1.22
LINC00540-201ENST00000611481 LEMD3Q9Y2U8 911 aa7.42□□□□□ -1.22
LINC00540-201ENST00000611481 PLCH2O75038 1416 aa7.42□□□□□ -1.22
LINC00540-201ENST00000611481 KDM5CP41229 1560 aa7.42□□□□□ -1.22
LINC00540-201ENST00000611481 PCSK2P16519 638 aa7.41□□□□□ -1.22
LINC00540-201ENST00000611481 HOXA10P31260 410 aaPredicted RBP7.41□□□□□ -1.22
LINC00540-201ENST00000611481 TMEM164Q5U3C3 297 aa7.41□□□□□ -1.22
LINC00540-201ENST00000611481 SOX13Q9UN79 622 aa7.41□□□□□ -1.22
LINC00540-201ENST00000611481 ANGEL1Q9UNK9 670 aaKnown RBP7.41□□□□□ -1.22
LINC00540-201ENST00000611481 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.41□□□□□ -1.22
LINC00540-201ENST00000611481 RGS12O14924 1447 aa7.41□□□□□ -1.22
LINC00540-201ENST00000611481 NUP153P49790 1475 aaKnown RBP7.41□□□□□ -1.22
LINC00540-201ENST00000611481 CDK13Q14004 1512 aaKnown RBP7.41□□□□□ -1.22
LINC00540-201ENST00000611481 CLTCQ00610 1675 aaKnown RBP7.41□□□□□ -1.22
LINC00540-201ENST00000611481 ROBO1Q9Y6N7 1651 aa7.41□□□□□ -1.22
LINC00540-201ENST00000611481 ACPPP15309 386 aa7.4□□□□□ -1.22
LINC00540-201ENST00000611481 SRPK2P78362 688 aaKnown RBP7.4□□□□□ -1.22
LINC00540-201ENST00000611481 CPSF6Q16630 551 aaKnown RBP eCLIP7.4□□□□□ -1.22
LINC00540-201ENST00000611481 SGO2Q562F6 1265 aa7.4□□□□□ -1.22
LINC00540-201ENST00000611481 NUTM2GQ5VZR2 741 aa7.4□□□□□ -1.22
LINC00540-201ENST00000611481 ABI1Q8IZP0 508 aa7.4□□□□□ -1.22
LINC00540-201ENST00000611481 C1orf127Q8N9H9 656 aa7.4□□□□□ -1.22
LINC00540-201ENST00000611481 TTC16Q8NEE8 873 aa7.4□□□□□ -1.22
LINC00540-201ENST00000611481 PMEPA1Q969W9 287 aa7.4□□□□□ -1.22
LINC00540-201ENST00000611481 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.4□□□□□ -1.22
LINC00540-201ENST00000611481 LRP5O75197 1615 aa7.39□□□□□ -1.23
LINC00540-201ENST00000611481 FOSL1P15407 271 aa7.39□□□□□ -1.23
LINC00540-201ENST00000611481 FZD5Q13467 585 aa7.39□□□□□ -1.23
LINC00540-201ENST00000611481 ATCAYQ86WG3 371 aa7.39□□□□□ -1.23
LINC00540-201ENST00000611481 FBXL6Q8N531 539 aa7.39□□□□□ -1.23
LINC00540-201ENST00000611481 TMEM102Q8N9M5 508 aaPredicted RBP7.39□□□□□ -1.23
LINC00540-201ENST00000611481 C12orf50Q8NA57 414 aaPredicted RBP7.39□□□□□ -1.23
LINC00540-201ENST00000611481 OSBPL1AQ9BXW6 950 aa7.39□□□□□ -1.23
LINC00540-201ENST00000611481 TMPRSS13Q9BYE2 586 aa7.39□□□□□ -1.23
LINC00540-201ENST00000611481 MLH3Q9UHC1 1453 aa7.38□□□□□ -1.23
LINC00540-201ENST00000611481 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.38□□□□□ -1.23
LINC00540-201ENST00000611481 F13BP05160 661 aa7.38□□□□□ -1.23
LINC00540-201ENST00000611481 IKBKEQ14164 716 aa7.38□□□□□ -1.23
LINC00540-201ENST00000611481 SMG8Q8ND04 991 aaKnown RBP7.38□□□□□ -1.23
LINC00540-201ENST00000611481 EDEM1Q92611 657 aa7.38□□□□□ -1.23
LINC00540-201ENST00000611481 HHIPQ96QV1 700 aa7.38□□□□□ -1.23
LINC00540-201ENST00000611481 SUGCTQ9HAC7 445 aa7.38□□□□□ -1.23
LINC00540-201ENST00000611481 CYP4F12Q9HCS2 524 aa7.38□□□□□ -1.23
LINC00540-201ENST00000611481 GTF3C3Q9Y5Q9 886 aa7.38□□□□□ -1.23
LINC00540-201ENST00000611481 IQGAP1P46940 1657 aa7.38□□□□□ -1.23
LINC00540-201ENST00000611481 ARID1BQ8NFD5 2236 aaPredicted RBP7.37□□□□□ -1.23
LINC00540-201ENST00000611481 ABCC1P33527 1531 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 MED14O60244 1454 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 SPATA31A6Q5VVP1 1343 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 FAM95CA0A1B0GW59 222 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 TRPA1O75762 1119 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 TIAF1O95411 115 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 DNM1Q05193 864 aaKnown RBP7.37□□□□□ -1.23
LINC00540-201ENST00000611481 MSMPQ1L6U9 139 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 C8orf34Q49A92 452 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 HGSNATQ68CP4 663 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 PAOXQ6QHF9 649 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 BSNDQ8WZ55 320 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 METTL22Q9BUU2 404 aaPredicted RBP7.37□□□□□ -1.23
LINC00540-201ENST00000611481 SEPT3Q9UH03 358 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 PHLPP1O60346 1717 aa7.37□□□□□ -1.23
LINC00540-201ENST00000611481 SOX1O00570 391 aaPredicted RBP7.36□□□□□ -1.23
LINC00540-201ENST00000611481 ATP2B4P23634 1241 aa7.36□□□□□ -1.23
LINC00540-201ENST00000611481 NXPE3Q969Y0 559 aa7.36□□□□□ -1.23
LINC00540-201ENST00000611481 FBXL18Q96ME1 805 aa7.36□□□□□ -1.23
LINC00540-201ENST00000611481 OSMRQ99650 979 aa7.36□□□□□ -1.23
LINC00540-201ENST00000611481 USP26Q9BXU7 913 aa7.36□□□□□ -1.23
LINC00540-201ENST00000611481 GGNBP2Q9H3C7 697 aa7.36□□□□□ -1.23
LINC00540-201ENST00000611481 CCDC39Q9UFE4 941 aa7.36□□□□□ -1.23
LINC00540-201ENST00000611481 XIRP1Q702N8 1843 aaKnown RBP7.36□□□□□ -1.23
LINC00540-201ENST00000611481 ITSN2Q9NZM3 1697 aa7.35□□□□□ -1.23
LINC00540-201ENST00000611481 DEPDC5O75140 1603 aa7.35□□□□□ -1.23
LINC00540-201ENST00000611481 AFF2P51816 1311 aa7.35□□□□□ -1.23
LINC00540-201ENST00000611481 LOC100289279A0A1B0GTE1 492 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms