RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TRIM47Q96LD4 638 aa7.89□□□□□ -1.15
CUX1-220ENST00000607092 GNL3LQ9NVN8 582 aaKnown RBP7.89□□□□□ -1.15
CUX1-220ENST00000607092 PTCH2Q9Y6C5 1203 aa7.89□□□□□ -1.15
CUX1-220ENST00000607092 UTYO14607 1347 aa7.88□□□□□ -1.15
CUX1-220ENST00000607092 A0A1W2PPC1 479 aa7.88□□□□□ -1.15
CUX1-220ENST00000607092 CXCL11O14625 94 aa7.88□□□□□ -1.15
CUX1-220ENST00000607092 FMNL1O95466 1100 aaPredicted RBP7.88□□□□□ -1.15
CUX1-220ENST00000607092 FXR1P51114 621 aaKnown RBP eCLIP7.88□□□□□ -1.15
CUX1-220ENST00000607092 CHAF1AQ13111 956 aaPredicted RBP7.88□□□□□ -1.15
CUX1-220ENST00000607092 PUM3Q15397 648 aaKnown RBP7.88□□□□□ -1.15
CUX1-220ENST00000607092 SLC4A10Q6U841 1118 aa7.88□□□□□ -1.15
CUX1-220ENST00000607092 SLF2Q8IX21 1173 aa7.88□□□□□ -1.15
CUX1-220ENST00000607092 FAM43AQ8N2R8 423 aa7.88□□□□□ -1.15
CUX1-220ENST00000607092 ZNF594Q96JF6 807 aaPredicted RBP7.88□□□□□ -1.15
CUX1-220ENST00000607092 PARK7Q99497 189 aaKnown RBP7.88□□□□□ -1.15
CUX1-220ENST00000607092 MRS2Q9HD23 443 aa7.88□□□□□ -1.15
CUX1-220ENST00000607092 SRRDQ9UH36 339 aa7.88□□□□□ -1.15
CUX1-220ENST00000607092 JAG2Q9Y219 1238 aa7.88□□□□□ -1.15
CUX1-220ENST00000607092 RIPOR2Q9Y4F9 1068 aa7.88□□□□□ -1.15
CUX1-220ENST00000607092 RANBP2P49792 3224 aaKnown RBP7.87□□□□□ -1.15
CUX1-220ENST00000607092 PTPRCP08575 1304 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 BTBD19C9JJ37 291 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 F6X3S4 739 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 IRF6O14896 467 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 SEMA3EO15041 775 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 GJB1P08034 283 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 SLC5A1P13866 664 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 GRK4P32298 578 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 PSMC4P43686 418 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 FCGRTP55899 365 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 RABL6Q3YEC7 729 aaPredicted RBP7.87□□□□□ -1.15
CUX1-220ENST00000607092 EPHA10Q5JZY3 1008 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 C17orf99Q6UX52 265 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 FASTKD5Q7L8L6 764 aaKnown RBP7.87□□□□□ -1.15
CUX1-220ENST00000607092 ZGPATQ8N5A5 531 aaKnown RBP7.87□□□□□ -1.15
CUX1-220ENST00000607092 SLAIN1Q8ND83 568 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 LPIN2Q92539 896 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 BIN2Q9UBW5 565 aaPredicted RBP7.87□□□□□ -1.15
CUX1-220ENST00000607092 KCNH4Q9UQ05 1017 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 PCDHAC2Q9Y5I4 1007 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 SNCAIPQ9Y6H5 919 aa7.87□□□□□ -1.15
CUX1-220ENST00000607092 ARAP2Q8WZ64 1704 aa7.86□□□□□ -1.15
CUX1-220ENST00000607092 PDHXO00330 501 aa7.86□□□□□ -1.15
CUX1-220ENST00000607092 ANP32CO43423 234 aa7.86□□□□□ -1.15
CUX1-220ENST00000607092 GJA8P48165 433 aa7.86□□□□□ -1.15
CUX1-220ENST00000607092 NOL9Q5SY16 702 aaKnown RBP7.86□□□□□ -1.15
CUX1-220ENST00000607092 APOBEC3HQ6NTF7 200 aaKnown RBP7.86□□□□□ -1.15
CUX1-220ENST00000607092 SH3TC2Q8TF17 1288 aa7.86□□□□□ -1.15
CUX1-220ENST00000607092 DPF3Q92784 378 aa7.86□□□□□ -1.15
CUX1-220ENST00000607092 ZKSCAN4Q969J2 545 aaPredicted RBP7.86□□□□□ -1.15
CUX1-220ENST00000607092 PICK1Q9NRD5 415 aa7.86□□□□□ -1.15
CUX1-220ENST00000607092 CIZ1Q9ULV3 898 aaPredicted RBP7.86□□□□□ -1.15
CUX1-220ENST00000607092 COLQQ9Y215 455 aaPredicted RBP7.86□□□□□ -1.15
CUX1-220ENST00000607092 SLC45A1Q9Y2W3 748 aa7.86□□□□□ -1.15
CUX1-220ENST00000607092 CENPFP49454 3210 aa7.86□□□□□ -1.15
CUX1-220ENST00000607092 MYPNQ86TC9 1320 aa7.85□□□□□ -1.15
CUX1-220ENST00000607092 A0A1B0GUL6 1792 aa7.85□□□□□ -1.15
CUX1-220ENST00000607092 H0YGN5 161 aa7.85□□□□□ -1.15
CUX1-220ENST00000607092 SUCLG2Q96I99 432 aa7.85□□□□□ -1.15
CUX1-220ENST00000607092 PUS3Q9BZE2 481 aaKnown RBP7.85□□□□□ -1.15
CUX1-220ENST00000607092 BICC1Q9H694 974 aaKnown RBP7.85□□□□□ -1.15
CUX1-220ENST00000607092 ZNF112Q9UJU3 913 aa7.85□□□□□ -1.15
CUX1-220ENST00000607092 PNMA3Q9UL41 463 aa7.85□□□□□ -1.15
CUX1-220ENST00000607092 OTOFQ9HC10 1997 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 AOX1Q06278 1338 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 SALL1Q9NSC2 1324 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 MKI67P46013 3256 aaKnown RBP7.84□□□□□ -1.15
CUX1-220ENST00000607092 EYA2O00167 538 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 ENTPD3O75355 529 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 MAP4K4O95819 1239 aaPredicted RBP7.84□□□□□ -1.15
CUX1-220ENST00000607092 LDHBP07195 334 aaKnown RBP7.84□□□□□ -1.15
CUX1-220ENST00000607092 NBPF7P0C2Y1 421 aaPredicted RBP7.84□□□□□ -1.15
CUX1-220ENST00000607092 CCL5P13501 91 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 OSBPP22059 807 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 BCAMP50895 628 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 CACNB3P54284 484 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 PABPC4Q13310 644 aaKnown RBP eCLIP7.84□□□□□ -1.15
CUX1-220ENST00000607092 SPTY2D1Q68D10 685 aaPredicted RBP7.84□□□□□ -1.15
CUX1-220ENST00000607092 VGLL2Q8N8G2 317 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.84□□□□□ -1.15
CUX1-220ENST00000607092 PXYLP1Q8TE99 480 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 TBC1D2Q9BYX2 928 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 RNF208Q9H0X6 261 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 DENND2AQ9ULE3 1009 aa7.84□□□□□ -1.15
CUX1-220ENST00000607092 IQSEC3Q9UPP2 1182 aaPredicted RBP7.84□□□□□ -1.15
CUX1-220ENST00000607092 LRRFIP2Q9Y608 721 aaKnown RBP7.84□□□□□ -1.15
CUX1-220ENST00000607092 CIAO1O76071 339 aa7.83□□□□□ -1.16
CUX1-220ENST00000607092 FARP2O94887 1054 aaPredicted RBP7.83□□□□□ -1.16
CUX1-220ENST00000607092 PRKCSHP14314 528 aaPredicted RBP7.83□□□□□ -1.16
CUX1-220ENST00000607092 FGFR2P21802 821 aa7.83□□□□□ -1.16
CUX1-220ENST00000607092 IRF5Q13568 498 aa7.83□□□□□ -1.16
CUX1-220ENST00000607092 LRRC24Q50LG9 513 aa7.83□□□□□ -1.16
CUX1-220ENST00000607092 CHRDL2Q6WN34 429 aa7.83□□□□□ -1.16
CUX1-220ENST00000607092 CDAN1Q8IWY9 1227 aa7.83□□□□□ -1.16
CUX1-220ENST00000607092 SMCR8Q8TEV9 937 aaPredicted RBP7.83□□□□□ -1.16
CUX1-220ENST00000607092 COA7Q96BR5 231 aa7.83□□□□□ -1.16
CUX1-220ENST00000607092 KAZALD1Q96I82 304 aa7.83□□□□□ -1.16
CUX1-220ENST00000607092 CEP126Q9P2H0 1117 aa7.83□□□□□ -1.16
CUX1-220ENST00000607092 CPA4Q9UI42 421 aa7.83□□□□□ -1.16
CUX1-220ENST00000607092 PDS5AQ29RF7 1337 aaKnown RBP7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms