RNA–Protein interactions for RNA: ENST00000602164.5

USF2-215, Transcript of upstream transcription factor 2, c-fos interacting, human

TSL 3

Gene USF2, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USF2-215	ENST00000602164	SLF2	Q8IX21	1173 aa		32.78	■■■□□ 2.84
USF2-215	ENST00000602164	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	32.78	■■■□□ 2.84
USF2-215	ENST00000602164	TMOD2	Q9NZR1	351 aa		32.78	■■■□□ 2.84
USF2-215	ENST00000602164	RAI14	Q9P0K7	980 aa		32.78	■■■□□ 2.84
USF2-215	ENST00000602164	LRP2BP	Q9P2M1	347 aa		32.78	■■■□□ 2.84
USF2-215	ENST00000602164	HDAC1	Q13547	482 aa	Predicted RBP	32.77	■■■□□ 2.84
USF2-215	ENST00000602164	FAM83A	Q86UY5	434 aa		32.77	■■■□□ 2.84
USF2-215	ENST00000602164	TMEM39B	Q9GZU3	492 aa		32.77	■■■□□ 2.84
USF2-215	ENST00000602164	TNNI2	P48788	182 aa		32.76	■■■□□ 2.83
USF2-215	ENST00000602164	RPAP1	Q9BWH6	1393 aa	Predicted RBP	32.75	■■■□□ 2.83
USF2-215	ENST00000602164	GPR75-ASB3	A0A0A6YYF3	556 aa		32.75	■■■□□ 2.83
USF2-215	ENST00000602164	ECE1	P42892	770 aa		32.75	■■■□□ 2.83
USF2-215	ENST00000602164	BTD	P43251	543 aa		32.75	■■■□□ 2.83
USF2-215	ENST00000602164	BCL11A	Q9H165	835 aa		32.75	■■■□□ 2.83
USF2-215	ENST00000602164	ANTXR1	Q9H6X2	564 aa		32.75	■■■□□ 2.83
USF2-215	ENST00000602164	USP40	Q9NVE5	1235 aa		32.75	■■■□□ 2.83
USF2-215	ENST00000602164	IGSF3	O75054	1194 aa		32.74	■■■□□ 2.83
USF2-215	ENST00000602164	GSTO1	P78417	241 aa		32.74	■■■□□ 2.83
USF2-215	ENST00000602164	NFIA	Q12857	509 aa		32.74	■■■□□ 2.83
USF2-215	ENST00000602164	RGMB	Q6NW40	437 aa		32.74	■■■□□ 2.83
USF2-215	ENST00000602164	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	32.74	■■■□□ 2.83
USF2-215	ENST00000602164	FZD1	Q9UP38	647 aa		32.74	■■■□□ 2.83
USF2-215	ENST00000602164	UBE2Q2L	H0YL09	131 aa		32.73	■■■□□ 2.83
USF2-215	ENST00000602164	SUPT20HL1	Q3ZLR7	823 aa		32.73	■■■□□ 2.83
USF2-215	ENST00000602164	FAM198A	Q9UFP1	575 aa		32.73	■■■□□ 2.83
USF2-215	ENST00000602164	FAM155A	B1AL88	458 aa	Predicted RBP	32.72	■■■□□ 2.83
USF2-215	ENST00000602164	LDHC	P07864	332 aa		32.72	■■■□□ 2.83
USF2-215	ENST00000602164	ATP5J	P18859	108 aa		32.72	■■■□□ 2.83
USF2-215	ENST00000602164	RHBDL3	P58872	404 aa		32.72	■■■□□ 2.83
USF2-215	ENST00000602164	MAP3K11	Q16584	847 aa		32.72	■■■□□ 2.83
USF2-215	ENST00000602164	PRKG1	Q13976	671 aa		32.71	■■■□□ 2.83
USF2-215	ENST00000602164	LDLRAD1	Q5T700	205 aa		32.71	■■■□□ 2.83
USF2-215	ENST00000602164	IDI2	Q9BXS1	227 aa		32.71	■■■□□ 2.83
USF2-215	ENST00000602164	TTLL12	Q14166	644 aa	Predicted RBP	32.7	■■■□□ 2.83
USF2-215	ENST00000602164	NAA16	Q6N069	864 aa	Predicted RBP	32.7	■■■□□ 2.83
USF2-215	ENST00000602164	ADGRA1	Q86SQ6	560 aa		32.7	■■■□□ 2.83
USF2-215	ENST00000602164	PCNT	O95613	3336 aa		32.69	■■■□□ 2.82
USF2-215	ENST00000602164	AOC2	O75106	756 aa		32.69	■■■□□ 2.82
USF2-215	ENST00000602164	WDHD1	O75717	1129 aa	Predicted RBP	32.69	■■■□□ 2.82
USF2-215	ENST00000602164	GRM1	Q13255	1194 aa		32.69	■■■□□ 2.82
USF2-215	ENST00000602164	ARMC9	Q7Z3E5	817 aa		32.69	■■■□□ 2.82
USF2-215	ENST00000602164	FAM151A	Q8WW52	585 aa		32.69	■■■□□ 2.82
USF2-215	ENST00000602164	ANGEL1	Q9UNK9	670 aa	Known RBP	32.69	■■■□□ 2.82
USF2-215	ENST00000602164	OTOF	Q9HC10	1997 aa		32.69	■■■□□ 2.82
USF2-215	ENST00000602164	SLC10A3	P09131	477 aa		32.68	■■■□□ 2.82
USF2-215	ENST00000602164	USP2	O75604	605 aa	Predicted RBP	32.67	■■■□□ 2.82
USF2-215	ENST00000602164	IDH1	O75874	414 aa	Known RBP	32.67	■■■□□ 2.82
USF2-215	ENST00000602164	ZNF157	P51786	506 aa	Predicted RBP	32.67	■■■□□ 2.82
USF2-215	ENST00000602164	RASAL3	Q86YV0	1011 aa		32.67	■■■□□ 2.82
USF2-215	ENST00000602164	DDX4	Q9NQI0	724 aa	Known RBP	32.67	■■■□□ 2.82
USF2-215	ENST00000602164	PPP1R12B	O60237	982 aa	Predicted RBP	32.66	■■■□□ 2.82
USF2-215	ENST00000602164	RGS3	P49796	1198 aa		32.66	■■■□□ 2.82
USF2-215	ENST00000602164	IRX6	P78412	446 aa	Predicted RBP	32.66	■■■□□ 2.82
USF2-215	ENST00000602164	TCP10	Q12799	353 aa		32.66	■■■□□ 2.82
USF2-215	ENST00000602164	ZFPM1	Q8IX07	1006 aa		32.66	■■■□□ 2.82
USF2-215	ENST00000602164	CCDC102A	Q96A19	550 aa		32.66	■■■□□ 2.82
USF2-215	ENST00000602164	GCC1	Q96CN9	775 aa		32.66	■■■□□ 2.82
USF2-215	ENST00000602164	EDC3	Q96F86	508 aa	Known RBP	32.66	■■■□□ 2.82
USF2-215	ENST00000602164	ZIC5	Q96T25	663 aa		32.66	■■■□□ 2.82
USF2-215	ENST00000602164	DNAJC2	Q99543	621 aa	Known RBP	32.66	■■■□□ 2.82
USF2-215	ENST00000602164	HAUS7	Q99871	368 aa		32.66	■■■□□ 2.82
USF2-215	ENST00000602164	BOLA2	Q9H3K6	86 aa		32.66	■■■□□ 2.82
USF2-215	ENST00000602164	GOLIM4	O00461	696 aa		32.65	■■■□□ 2.82
USF2-215	ENST00000602164	ENTPD3	O75355	529 aa		32.65	■■■□□ 2.82
USF2-215	ENST00000602164	MAP4K4	O95819	1239 aa	Predicted RBP	32.65	■■■□□ 2.82
USF2-215	ENST00000602164	MAP2K2	P36507	400 aa		32.65	■■■□□ 2.82
USF2-215	ENST00000602164	TTF1	Q15361	905 aa	Predicted RBP	32.65	■■■□□ 2.82
USF2-215	ENST00000602164	ECHDC1	Q9NTX5	307 aa		32.65	■■■□□ 2.82
USF2-215	ENST00000602164	PPP4C	P60510	307 aa		32.64	■■■□□ 2.82
USF2-215	ENST00000602164	NOG	Q13253	232 aa		32.64	■■■□□ 2.82
USF2-215	ENST00000602164	MAP3K12	Q12852	859 aa		32.63	■■■□□ 2.81
USF2-215	ENST00000602164	MAGEB6	Q8N7X4	407 aa		32.63	■■■□□ 2.81
USF2-215	ENST00000602164	OTUD7A	Q8TE49	926 aa	Predicted RBP	32.63	■■■□□ 2.81
USF2-215	ENST00000602164	PAG1	Q9NWQ8	432 aa		32.63	■■■□□ 2.81
USF2-215	ENST00000602164	ATRNL1	Q5VV63	1379 aa		32.62	■■■□□ 2.81
USF2-215	ENST00000602164	SALL3	Q9BXA9	1300 aa		32.62	■■■□□ 2.81
USF2-215	ENST00000602164	NPM3	O75607	178 aa	Known RBP	32.62	■■■□□ 2.81
USF2-215	ENST00000602164	CYP7A1	P22680	504 aa		32.62	■■■□□ 2.81
USF2-215	ENST00000602164	TMED8	Q6PL24	325 aa	Predicted RBP	32.62	■■■□□ 2.81
USF2-215	ENST00000602164	SMC5	Q8IY18	1101 aa		32.62	■■■□□ 2.81
USF2-215	ENST00000602164	AATF	Q9NY61	560 aa	Known RBP eCLIP	32.62	■■■□□ 2.81
USF2-215	ENST00000602164	CDK5RAP2	Q96SN8	1893 aa		32.61	■■■□□ 2.81
USF2-215	ENST00000602164	UNCX	A6NJT0	531 aa		32.61	■■■□□ 2.81
USF2-215	ENST00000602164	IGHD	P01880	384 aa		32.61	■■■□□ 2.81
USF2-215	ENST00000602164	HSPA1A	P0DMV8	641 aa	Known RBP	32.61	■■■□□ 2.81
USF2-215	ENST00000602164	HSPA1B	P0DMV9	641 aa	Known RBP	32.61	■■■□□ 2.81
USF2-215	ENST00000602164	IREB2	P48200	963 aa	Known RBP	32.61	■■■□□ 2.81
USF2-215	ENST00000602164	SH3BP5L	Q7L8J4	393 aa		32.61	■■■□□ 2.81
USF2-215	ENST00000602164	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	32.61	■■■□□ 2.81
USF2-215	ENST00000602164	CLMN	Q96JQ2	1002 aa		32.61	■■■□□ 2.81
USF2-215	ENST00000602164	WBP1L	Q9NX94	342 aa		32.61	■■■□□ 2.81
USF2-215	ENST00000602164	TSHZ3	Q63HK5	1081 aa		32.6	■■■□□ 2.81
USF2-215	ENST00000602164	RWDD1	Q9H446	243 aa	Predicted RBP	32.6	■■■□□ 2.81
USF2-215	ENST00000602164	FOCAD	Q5VW36	1801 aa		32.6	■■■□□ 2.81
USF2-215	ENST00000602164	COL2A1	P02458	1487 aa	Predicted RBP	32.6	■■■□□ 2.81
USF2-215	ENST00000602164	BAG3	O95817	575 aa		32.59	■■■□□ 2.81
USF2-215	ENST00000602164	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	32.59	■■■□□ 2.81	7e-7	■■□□□ 13
USF2-215	ENST00000602164	PDE6A	P16499	860 aa		32.58	■■■□□ 2.81
USF2-215	ENST00000602164	PICALM	Q13492	652 aa		32.58	■■■□□ 2.81
USF2-215	ENST00000602164	ANKRD45	Q5TZF3	282 aa		32.58	■■■□□ 2.81

Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms