RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ZRANB2O95218 330 aaKnown RBP eCLIP21.13■□□□□ 0.97
UPF1-210ENST00000600689 LRRC24Q50LG9 513 aa21.13■□□□□ 0.97
UPF1-210ENST00000600689 TOGARAM2Q6ZUX3 1019 aa21.13■□□□□ 0.97
UPF1-210ENST00000600689 C10orf67Q8IYJ2 551 aa21.13■□□□□ 0.97
UPF1-210ENST00000600689 PPP2R2CQ9Y2T4 447 aa21.13■□□□□ 0.97
UPF1-210ENST00000600689 NEDD4P46934 1319 aa21.12■□□□□ 0.97
UPF1-210ENST00000600689 MCM6Q14566 821 aa21.12■□□□□ 0.97
UPF1-210ENST00000600689 OSBP2Q969R2 916 aa21.12■□□□□ 0.97
UPF1-210ENST00000600689 LZTFL1Q9NQ48 299 aa21.12■□□□□ 0.97
UPF1-210ENST00000600689 ABCC6O95255 1503 aa21.12■□□□□ 0.97
UPF1-210ENST00000600689 TFRCP02786 760 aaKnown RBP21.12■□□□□ 0.97
UPF1-210ENST00000600689 FBXO18Q8NFZ0 1043 aa21.12■□□□□ 0.97
UPF1-210ENST00000600689 HSD3B7Q9H2F3 369 aa21.12■□□□□ 0.97
UPF1-210ENST00000600689 ZBTB3Q9H5J0 574 aa21.12■□□□□ 0.97
UPF1-210ENST00000600689 ARFGEF2Q9Y6D5 1785 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 VWA3AA6NCI4 1184 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 PPP2R3AQ06190 1150 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 PLBD2Q8NHP8 589 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 STRCQ7RTU9 1775 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 SALL1Q9NSC2 1324 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 A0A1W2PQ27 194 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 A0A1W2PQ64 194 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 A0A1W2PQD8 194 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 TRIM66O15016 1216 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 TBC1D8O95759 1140 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 IL2RBP14784 551 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 TNNT3P45378 269 aaPredicted RBP21.11■□□□□ 0.97
UPF1-210ENST00000600689 MYL5Q02045 173 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 MTF1Q14872 753 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 MYL10Q9BUA6 226 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 JCADQ9P266 1359 aa21.11■□□□□ 0.97
UPF1-210ENST00000600689 LRRFIP1Q32MZ4 808 aaKnown RBP21.1■□□□□ 0.97
UPF1-210ENST00000600689 PI16Q6UXB8 463 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 CCDC82Q8N4S0 544 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 CDC27P30260 824 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 EVA1CP58658 441 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 PDE4BQ07343 736 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 AXDND1Q5T1B0 1012 aaPredicted RBP21.1■□□□□ 0.97
UPF1-210ENST00000600689 OLFM4Q6UX06 510 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 CCDC191Q8NCU4 936 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 CCDC12Q8WUD4 166 aaPredicted RBP21.1■□□□□ 0.97
UPF1-210ENST00000600689 DHX58Q96C10 678 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 PARD6BQ9BYG5 372 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 A0A0U1RQJ8 604 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 WWC2Q6AWC2 1192 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 CC2D1AQ6P1N0 951 aaPredicted RBP21.1■□□□□ 0.97
UPF1-210ENST00000600689 RALYLQ86SE5 291 aaKnown RBP21.1■□□□□ 0.97
UPF1-210ENST00000600689 ATRIPQ8WXE1 791 aa21.1■□□□□ 0.97
UPF1-210ENST00000600689 ZNF274Q96GC6 653 aaPredicted RBP21.1■□□□□ 0.97
UPF1-210ENST00000600689 PUS3Q9BZE2 481 aaKnown RBP21.1■□□□□ 0.97
UPF1-210ENST00000600689 CASP7P55210 303 aa21.09■□□□□ 0.97
UPF1-210ENST00000600689 GRAMD1CQ8IYS0 662 aa21.09■□□□□ 0.97
UPF1-210ENST00000600689 LCMT1Q9UIC8 334 aa21.09■□□□□ 0.97
UPF1-210ENST00000600689 MICU3Q86XE3 530 aa21.09■□□□□ 0.97
UPF1-210ENST00000600689 CREBRFQ8IUR6 639 aa21.09■□□□□ 0.97
UPF1-210ENST00000600689 BAG1Q99933 345 aaPredicted RBP21.09■□□□□ 0.97
UPF1-210ENST00000600689 PHLPP2Q6ZVD8 1323 aa21.09■□□□□ 0.97
UPF1-210ENST00000600689 KDM4FA0A1W2PPD8 638 aa21.08■□□□□ 0.97
UPF1-210ENST00000600689 LONRF3Q496Y0 759 aa21.08■□□□□ 0.97
UPF1-210ENST00000600689 ATL3Q6DD88 541 aa21.08■□□□□ 0.97
UPF1-210ENST00000600689 CNNM3Q8NE01 707 aa21.08■□□□□ 0.97
UPF1-210ENST00000600689 ARFGAP3Q9NP61 516 aa21.08■□□□□ 0.97
UPF1-210ENST00000600689 EFCAB8A8MWE9 144 aa21.08■□□□□ 0.97
UPF1-210ENST00000600689 PHACTR2O75167 634 aa21.08■□□□□ 0.97
UPF1-210ENST00000600689 ZMYM1Q5SVZ6 1142 aa21.08■□□□□ 0.97
UPF1-210ENST00000600689 ALG1Q9BT22 464 aa21.08■□□□□ 0.97
UPF1-210ENST00000600689 PCDHA5Q9Y5H7 936 aa21.08■□□□□ 0.97
UPF1-210ENST00000600689 APPP05067 770 aa21.08■□□□□ 0.96
UPF1-210ENST00000600689 KIF23Q02241 960 aaPredicted RBP21.08■□□□□ 0.96
UPF1-210ENST00000600689 RABL6Q3YEC7 729 aaPredicted RBP21.08■□□□□ 0.96
UPF1-210ENST00000600689 SHC4Q6S5L8 630 aa21.08■□□□□ 0.96
UPF1-210ENST00000600689 DSCC1Q9BVC3 393 aa21.08■□□□□ 0.96
UPF1-210ENST00000600689 POLR3EQ9NVU0 708 aa21.08■□□□□ 0.96
UPF1-210ENST00000600689 RNF113AO15541 343 aaKnown RBP21.07■□□□□ 0.96
UPF1-210ENST00000600689 YEATS4O95619 227 aa21.07■□□□□ 0.96
UPF1-210ENST00000600689 SUGCTQ9HAC7 445 aa21.07■□□□□ 0.96
UPF1-210ENST00000600689 ANKRD65E5RJM6 399 aa21.07■□□□□ 0.96
UPF1-210ENST00000600689 ZSCAN12O43309 604 aa21.07■□□□□ 0.96
UPF1-210ENST00000600689 PDE4CQ08493 712 aa21.07■□□□□ 0.96
UPF1-210ENST00000600689 ZSCAN26Q16670 478 aa21.07■□□□□ 0.96
UPF1-210ENST00000600689 FOXP4Q8IVH2 680 aaPredicted RBP21.07■□□□□ 0.96
UPF1-210ENST00000600689 VSTM4Q8IW00 320 aa21.07■□□□□ 0.96
UPF1-210ENST00000600689 NKX2-3Q8TAU0 364 aa21.07■□□□□ 0.96
UPF1-210ENST00000600689 FEZ2Q9UHY8 353 aaPredicted RBP21.07■□□□□ 0.96
UPF1-210ENST00000600689 COBLO75128 1261 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 FGAP02671 866 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 CMA1P23946 247 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 KLHL10Q6JEL2 608 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 VPS37DQ86XT2 251 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 CARD10Q9BWT7 1032 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 HELLSQ9NRZ9 838 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 KCND1Q9NSA2 647 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 INTS13Q9NVM9 706 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 PARP4Q9UKK3 1724 aaKnown RBP21.06■□□□□ 0.96
UPF1-210ENST00000600689 A0A1B0GUL7 405 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 ERVV-2B6SEH9 535 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 IMMTQ16891 758 aaKnown RBP21.06■□□□□ 0.96
UPF1-210ENST00000600689 RNF216Q9NWF9 866 aaPredicted RBP21.06■□□□□ 0.96
UPF1-210ENST00000600689 HPS5Q9UPZ3 1129 aa21.06■□□□□ 0.96
UPF1-210ENST00000600689 SH3TC1Q8TE82 1336 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms