RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	NOG	Q13253	232 aa		10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	TNFAIP1	Q13829	316 aa		10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	SPTY2D1	Q68D10	685 aa	Predicted RBP	10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	CDC42EP5	Q6NZY7	148 aa		10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	MOB2	Q70IA6	237 aa		10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	RASAL3	Q86YV0	1011 aa		10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	CCDC102A	Q96A19	550 aa		10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	IDI2	Q9BXS1	227 aa		10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	FAM198A	Q9UFP1	575 aa		10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	USP2	O75604	605 aa	Predicted RBP	10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	WDHD1	O75717	1129 aa	Predicted RBP	10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	MAP4K4	O95819	1239 aa	Predicted RBP	10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	NF2	P35240	595 aa		10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	ZNF157	P51786	506 aa	Predicted RBP	10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	AAMP	Q13685	434 aa		10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	SUPT20HL1	Q3ZLR7	823 aa		10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	YTHDC1	Q96MU7	727 aa	Known RBP	10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	BEGAIN	Q9BUH8	593 aa		10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	TMEM39B	Q9GZU3	492 aa		10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	CCDC8	Q9H0W5	538 aa	Predicted RBP	10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	COL2A1	P02458	1487 aa	Predicted RBP	10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	MROH7-TTC4	A0A0A0MT08	1334 aa		10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	SIPA1L1	O43166	1804 aa		10.79	□□□□□ -0.68
SSBP4-208	ENST00000600628	UBE2Q2L	H0YL09	131 aa		10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	PPP4C	P60510	307 aa		10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	NFIA	Q12857	509 aa		10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	OS9	Q13438	667 aa	Predicted RBP	10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	CCDC158	Q5M9N0	1113 aa		10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	TMED8	Q6PL24	325 aa	Predicted RBP	10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	TBC1D9	Q6ZT07	1266 aa		10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	ERICH6	Q7L0X2	663 aa		10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	FAM151A	Q8WW52	585 aa		10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	VEZT	Q9HBM0	779 aa		10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	PRDM10	Q9NQV6	1147 aa		10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	CENPF	P49454	3210 aa		10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	MYH7	P12883	1935 aa		10.78	□□□□□ -0.68
SSBP4-208	ENST00000600628	TCP10L2	B9ZVM9	353 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	ENTPD3	O75355	529 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	HSPA8	P11142	646 aa	Known RBP	10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	ZAP70	P43403	619 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	LBX1	P52954	281 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	CACNB3	P54284	484 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	KIF23	Q02241	960 aa	Predicted RBP	10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	TTLL12	Q14166	644 aa	Predicted RBP	10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	TTC39A	Q5SRH9	613 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	GORAB	Q5T7V8	394 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	IFFO2	Q5TF58	517 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	AACS	Q86V21	672 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	IL1RAPL2	Q9NP60	686 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	ZNF112	Q9UJU3	913 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	FZD1	Q9UP38	647 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	DDX60L	Q5H9U9	1706 aa	Known RBP	10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	SALL3	Q9BXA9	1300 aa		10.77	□□□□□ -0.69
SSBP4-208	ENST00000600628	CA12	O43570	354 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	ATP5J	P18859	108 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	TM4SF4	P48230	202 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	TNNI2	P48788	182 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	SH3BP5L	Q7L8J4	393 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	ARMC9	Q7Z3E5	817 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	ADGRA1	Q86SQ6	560 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	METTL16	Q86W50	562 aa	Known RBP	10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	ZFPM1	Q8IX07	1006 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	SLF2	Q8IX21	1173 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	CLASRP	Q8N2M8	674 aa	Known RBP	10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	CSRNP1	Q96S65	589 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	CRBN	Q96SW2	442 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	ANTXR1	Q9H6X2	564 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	DDX4	Q9NQI0	724 aa	Known RBP	10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	PIH1D3	Q9NQM4	214 aa	Known RBP	10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	SNRK	Q9NRH2	765 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	ABCF2	Q9UG63	623 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	PHIP	Q8WWQ0	1821 aa		10.76	□□□□□ -0.69
SSBP4-208	ENST00000600628	PPP1R12B	O60237	982 aa	Predicted RBP	10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	GJA5	P36382	358 aa		10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	GSTO1	P78417	241 aa		10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	HDAC1	Q13547	482 aa	Predicted RBP	10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	PRKG1	Q13976	671 aa		10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	SPRYD7	Q5W111	196 aa		10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	DZIP1	Q86YF9	867 aa	Known RBP	10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	REM2	Q8IYK8	340 aa	Predicted RBP	10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	CLMN	Q96JQ2	1002 aa		10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	CFHR5	Q9BXR6	569 aa		10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	LRRCC1	Q9C099	1032 aa		10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	USP40	Q9NVE5	1235 aa		10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	ANGEL1	Q9UNK9	670 aa	Known RBP	10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	AK9	Q5TCS8	1911 aa		10.75	□□□□□ -0.69
SSBP4-208	ENST00000600628	PTPRF	P10586	1907 aa		10.74	□□□□□ -0.69
SSBP4-208	ENST00000600628	TCRBV5S4A2T	A0A5A2	114 aa		10.74	□□□□□ -0.69
SSBP4-208	ENST00000600628	TESPA1	A2RU30	521 aa	Predicted RBP	10.74	□□□□□ -0.69
SSBP4-208	ENST00000600628	PHF20L1	A8MW92	1017 aa		10.74	□□□□□ -0.69
SSBP4-208	ENST00000600628	LDHC	P07864	332 aa		10.74	□□□□□ -0.69
SSBP4-208	ENST00000600628	ZBTB48	P10074	688 aa	Predicted RBP	10.74	□□□□□ -0.69
SSBP4-208	ENST00000600628	BTD	P43251	543 aa		10.74	□□□□□ -0.69
SSBP4-208	ENST00000600628	ANKRD13A	Q8IZ07	590 aa		10.74	□□□□□ -0.69
SSBP4-208	ENST00000600628	TNS4	Q8IZW8	715 aa		10.74	□□□□□ -0.69
SSBP4-208	ENST00000600628	HAUS7	Q99871	368 aa		10.74	□□□□□ -0.69
SSBP4-208	ENST00000600628	SAGE1	Q9NXZ1	904 aa		10.74	□□□□□ -0.69

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