RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CCDC158Q5M9N0 1113 aa19.86■□□□□ 0.77
LSM4-206ENST00000600289 SPTY2D1Q68D10 685 aaPredicted RBP19.86■□□□□ 0.77
LSM4-206ENST00000600289 C2orf69Q8N8R5 385 aa19.86■□□□□ 0.77
LSM4-206ENST00000600289 SPATA5Q8NB90 893 aa19.86■□□□□ 0.77
LSM4-206ENST00000600289 ZNF70Q9UC06 446 aaPredicted RBP19.86■□□□□ 0.77
LSM4-206ENST00000600289 OTOFQ9HC10 1997 aa19.85■□□□□ 0.77
LSM4-206ENST00000600289 IGSF3O75054 1194 aa19.85■□□□□ 0.77
LSM4-206ENST00000600289 MCAMP43121 646 aa19.85■□□□□ 0.77
LSM4-206ENST00000600289 ZNF157P51786 506 aaPredicted RBP19.85■□□□□ 0.77
LSM4-206ENST00000600289 TNFAIP1Q13829 316 aa19.85■□□□□ 0.77
LSM4-206ENST00000600289 FKBP1CQ5VVH2 108 aa19.85■□□□□ 0.77
LSM4-206ENST00000600289 APOBEC3HQ6NTF7 200 aaKnown RBP19.85■□□□□ 0.77
LSM4-206ENST00000600289 DEFB129Q9H1M3 183 aa19.85■□□□□ 0.77
LSM4-206ENST00000600289 SSC5DA1L4H1 1573 aa19.85■□□□□ 0.77
LSM4-206ENST00000600289 FOCADQ5VW36 1801 aa19.84■□□□□ 0.77
LSM4-206ENST00000600289 CLRN2A0PK11 232 aa19.84■□□□□ 0.77
LSM4-206ENST00000600289 TTC39AQ5SRH9 613 aa19.84■□□□□ 0.77
LSM4-206ENST00000600289 TDRD3Q9H7E2 651 aaKnown RBP19.84■□□□□ 0.77
LSM4-206ENST00000600289 SCAF8Q9UPN6 1271 aaKnown RBP19.84■□□□□ 0.77
LSM4-206ENST00000600289 GAKO14976 1311 aa19.83■□□□□ 0.77
LSM4-206ENST00000600289 NF2P35240 595 aa19.83■□□□□ 0.77
LSM4-206ENST00000600289 FAM163AQ96GL9 167 aaPredicted RBP19.83■□□□□ 0.77
LSM4-206ENST00000600289 VEZTQ9HBM0 779 aa19.83■□□□□ 0.77
LSM4-206ENST00000600289 TLR7Q9NYK1 1049 aaKnown RBP19.83■□□□□ 0.77
LSM4-206ENST00000600289 DAGLAQ9Y4D2 1042 aa19.83■□□□□ 0.77
LSM4-206ENST00000600289 CDK5RAP2Q96SN8 1893 aa19.83■□□□□ 0.76
LSM4-206ENST00000600289 RPAP1Q9BWH6 1393 aaPredicted RBP19.83■□□□□ 0.76
LSM4-206ENST00000600289 AAMPQ13685 434 aa19.82■□□□□ 0.76
LSM4-206ENST00000600289 AACSQ86V21 672 aa19.82■□□□□ 0.76
LSM4-206ENST00000600289 SLF2Q8IX21 1173 aa19.82■□□□□ 0.76
LSM4-206ENST00000600289 CLASRPQ8N2M8 674 aaKnown RBP19.82■□□□□ 0.76
LSM4-206ENST00000600289 CCDC8Q9H0W5 538 aaPredicted RBP19.82■□□□□ 0.76
LSM4-206ENST00000600289 TNNI2P48788 182 aa19.81■□□□□ 0.76
LSM4-206ENST00000600289 RASA3Q14644 834 aa19.81■□□□□ 0.76
LSM4-206ENST00000600289 DIXDC1Q155Q3 683 aa19.81■□□□□ 0.76
LSM4-206ENST00000600289 PI16Q6UXB8 463 aa19.81■□□□□ 0.76
LSM4-206ENST00000600289 ERICH6Q7L0X2 663 aa19.81■□□□□ 0.76
LSM4-206ENST00000600289 FAM83AQ86UY5 434 aa19.81■□□□□ 0.76
LSM4-206ENST00000600289 ZNF296Q8WUU4 475 aaPredicted RBP19.81■□□□□ 0.76
LSM4-206ENST00000600289 CRBNQ96SW2 442 aa19.81■□□□□ 0.76
LSM4-206ENST00000600289 IL1RAPL2Q9NP60 686 aa19.81■□□□□ 0.76
LSM4-206ENST00000600289 ABCF2Q9UG63 623 aa19.81■□□□□ 0.76
LSM4-206ENST00000600289 PRAMEF18Q5VWM3 479 aa19.8■□□□□ 0.76
LSM4-206ENST00000600289 DZIP1Q86YF9 867 aaKnown RBP19.8■□□□□ 0.76
LSM4-206ENST00000600289 DCTPP1Q9H773 170 aa19.8■□□□□ 0.76
LSM4-206ENST00000600289 TMOD2Q9NZR1 351 aa19.8■□□□□ 0.76
LSM4-206ENST00000600289 MYH7P12883 1935 aa19.8■□□□□ 0.76
LSM4-206ENST00000600289 RFX7Q2KHR2 1363 aa19.8■□□□□ 0.76
LSM4-206ENST00000600289 MROH7-TTC4A0A0A0MT08 1334 aa19.79■□□□□ 0.76
LSM4-206ENST00000600289 MAP3K11Q16584 847 aa19.79■□□□□ 0.76
LSM4-206ENST00000600289 SUPT20HL1Q3ZLR7 823 aa19.79■□□□□ 0.76
LSM4-206ENST00000600289 FBXO46Q6PJ61 603 aaPredicted RBP19.79■□□□□ 0.76
LSM4-206ENST00000600289 RASAL3Q86YV0 1011 aa19.79■□□□□ 0.76
LSM4-206ENST00000600289 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.79■□□□□ 0.76
LSM4-206ENST00000600289 TEPSINQ96N21 525 aa19.79■□□□□ 0.76
LSM4-206ENST00000600289 PCDHB15Q9Y5E8 787 aa19.79■□□□□ 0.76
LSM4-206ENST00000600289 UNCXA6NJT0 531 aa19.78■□□□□ 0.76
LSM4-206ENST00000600289 GSTO1P78417 241 aa19.78■□□□□ 0.76
LSM4-206ENST00000600289 MECOMQ03112 1051 aa19.78■□□□□ 0.76
LSM4-206ENST00000600289 ZNF384Q8TF68 577 aa19.78■□□□□ 0.76
LSM4-206ENST00000600289 NSUN4Q96CB9 384 aaKnown RBP19.78■□□□□ 0.76
LSM4-206ENST00000600289 LRRCC1Q9C099 1032 aa19.78■□□□□ 0.76
LSM4-206ENST00000600289 AK9Q5TCS8 1911 aa19.77■□□□□ 0.76
LSM4-206ENST00000600289 CYP2E1P05181 493 aaPredicted RBP19.77■□□□□ 0.76
LSM4-206ENST00000600289 CDC42EP5Q6NZY7 148 aa19.77■□□□□ 0.76
LSM4-206ENST00000600289 TBC1D9Q6ZT07 1266 aa19.77■□□□□ 0.76
LSM4-206ENST00000600289 ARMC9Q7Z3E5 817 aa19.77■□□□□ 0.76
LSM4-206ENST00000600289 GPR75-ASB3A0A0A6YYF3 556 aa19.76■□□□□ 0.75
LSM4-206ENST00000600289 TCP10L2B9ZVM9 353 aa19.76■□□□□ 0.75
LSM4-206ENST00000600289 MAP4K4O95819 1239 aaPredicted RBP19.76■□□□□ 0.75
LSM4-206ENST00000600289 LDHCP07864 332 aa19.76■□□□□ 0.75
LSM4-206ENST00000600289 IFIT2P09913 472 aaKnown RBP19.76■□□□□ 0.75
LSM4-206ENST00000600289 LDLRAD1Q5T700 205 aa19.76■□□□□ 0.75
LSM4-206ENST00000600289 NBPF12Q5TAG4 269 aaPredicted RBP19.76■□□□□ 0.75
LSM4-206ENST00000600289 TMED8Q6PL24 325 aaPredicted RBP19.76■□□□□ 0.75
LSM4-206ENST00000600289 REM2Q8IYK8 340 aaPredicted RBP19.76■□□□□ 0.75
LSM4-206ENST00000600289 SNRKQ9NRH2 765 aa19.76■□□□□ 0.75
LSM4-206ENST00000600289 COL6A3P12111 3177 aa19.76■□□□□ 0.75
LSM4-206ENST00000600289 TRIOBPQ9H2D6 2365 aa19.76■□□□□ 0.75
LSM4-206ENST00000600289 KIAA0100Q14667 2235 aaKnown RBP19.75■□□□□ 0.75
LSM4-206ENST00000600289 POTEFA5A3E0 1075 aa19.75■□□□□ 0.75
LSM4-206ENST00000600289 APBB1O00213 710 aa19.75■□□□□ 0.75
LSM4-206ENST00000600289 PPP1R12BO60237 982 aaPredicted RBP19.75■□□□□ 0.75
LSM4-206ENST00000600289 TBC1D8O95759 1140 aa19.75■□□□□ 0.75
LSM4-206ENST00000600289 ZAP70P43403 619 aa19.75■□□□□ 0.75
LSM4-206ENST00000600289 IDI2Q9BXS1 227 aa19.75■□□□□ 0.75
LSM4-206ENST00000600289 TMEM39BQ9GZU3 492 aa19.75■□□□□ 0.75
LSM4-206ENST00000600289 RAI14Q9P0K7 980 aa19.75■□□□□ 0.75
LSM4-206ENST00000600289 LRP2BPQ9P2M1 347 aa19.75■□□□□ 0.75
LSM4-206ENST00000600289 COL2A1P02458 1487 aaPredicted RBP19.74■□□□□ 0.75
LSM4-206ENST00000600289 DLL1O00548 723 aa19.74■□□□□ 0.75
LSM4-206ENST00000600289 CACNB3P54284 484 aa19.74■□□□□ 0.75
LSM4-206ENST00000600289 MOB2Q70IA6 237 aa19.74■□□□□ 0.75
LSM4-206ENST00000600289 FAM151AQ8WW52 585 aa19.74■□□□□ 0.75
LSM4-206ENST00000600289 A0A0C4DFX4 3053 aa19.74■□□□□ 0.75
LSM4-206ENST00000600289 UBE2Q2LH0YL09 131 aa19.73■□□□□ 0.75
LSM4-206ENST00000600289 NPM3O75607 178 aaKnown RBP19.73■□□□□ 0.75
LSM4-206ENST00000600289 BTDP43251 543 aa19.73■□□□□ 0.75
LSM4-206ENST00000600289 HDAC1Q13547 482 aaPredicted RBP19.73■□□□□ 0.75
LSM4-206ENST00000600289 TTLL12Q14166 644 aaPredicted RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms