RNA–Protein interactions for RNA: ENST00000598580.1

GRAMD1A-209, Transcript of GRAM domain containing 1A, human

TSL 3

Gene GRAMD1A, Length 400 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GRAMD1A-209	ENST00000598580	ARAP2	Q8WZ64	1704 aa		13.81	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	PHKA1	P46020	1223 aa		13.8	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	ERO1B	Q86YB8	467 aa		13.8	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	FAM151A	Q8WW52	585 aa		13.8	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	ZNF112	Q9UJU3	913 aa		13.8	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	CSAD	Q9Y600	493 aa		13.8	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	PTCH2	Q9Y6C5	1203 aa		13.8	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	BRCA2	P51587	3418 aa		13.8	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	CIAO1	O76071	339 aa		13.79	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	SLC5A1	P13866	664 aa		13.79	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	TCP10	Q12799	353 aa		13.79	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	WDR66	Q8TBY9	1149 aa		13.79	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	ZNF333	Q96JL9	665 aa		13.79	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	MEIS3	Q99687	375 aa		13.79	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	ZFYVE28	Q9HCC9	887 aa		13.79	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	LRRFIP2	Q9Y608	721 aa	Known RBP	13.79	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	CEP290	O15078	2479 aa		13.79	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	TLR2	O60603	784 aa		13.78	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	CETP	P11597	493 aa		13.78	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	PPIL2	Q13356	520 aa		13.78	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	ATP2B3	Q16720	1220 aa		13.78	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	INTS3	Q68E01	1043 aa	Known RBP	13.78	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	SH3BP5L	Q7L8J4	393 aa		13.78	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	TNN	Q9UQP3	1299 aa		13.78	□□□□□ -0.2
GRAMD1A-209	ENST00000598580	ECM2	O94769	699 aa	Predicted RBP	13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	UBTFL1	P0CB47	393 aa	Predicted RBP	13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	TIMM10	P62072	90 aa		13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	SNAPC2	Q13487	334 aa		13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	ATRNL1	Q5VV63	1379 aa		13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	C17orf99	Q6UX52	265 aa		13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	ZNF384	Q8TF68	577 aa		13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	ZNF341	Q9BYN7	854 aa		13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	COPRS	Q9NQ92	184 aa		13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	USP40	Q9NVE5	1235 aa		13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	CEP126	Q9P2H0	1117 aa		13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	KCNH4	Q9UQ05	1017 aa		13.77	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	ZSWIM8	A7E2V4	1837 aa		13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	MAST3	O60307	1309 aa		13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	ADGRA2	Q96PE1	1338 aa		13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	SALL1	Q9NSC2	1324 aa		13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	PHF20L1	A8MW92	1017 aa		13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	MYC	P01106	439 aa	Predicted RBP	13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	RARS	P54136	660 aa	Known RBP	13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	LACTB	P83111	547 aa	Predicted RBP	13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	PPAT	Q06203	517 aa		13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	CCDC102B	Q68D86	513 aa		13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	TMOD2	Q9NZR1	351 aa		13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	CPA4	Q9UI42	421 aa		13.76	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	LDHB	P07195	334 aa	Known RBP	13.75	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	IL15	P40933	162 aa	Predicted RBP	13.75	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	RASGRF1	Q13972	1273 aa		13.75	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	GPAT2	Q6NUI2	795 aa		13.75	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	SH3TC2	Q8TF17	1288 aa		13.75	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	DDX4	Q9NQI0	724 aa	Known RBP	13.75	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	FBXO3	Q9UK99	471 aa		13.75	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	GAK	O14976	1311 aa		13.74	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	ZBTB22	O15209	634 aa		13.74	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	TFCP2	Q12800	502 aa		13.74	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	NOL9	Q5SY16	702 aa	Known RBP	13.74	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	DCAF15	Q66K64	600 aa		13.74	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	TRIM47	Q96LD4	638 aa		13.74	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	ZCCHC17	Q9NP64	241 aa	Known RBP	13.74	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.74	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	RFX7	Q2KHR2	1363 aa		13.73	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	DDTL	A6NHG4	134 aa	Predicted RBP	13.73	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	PDHX	O00330	501 aa		13.73	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	WDHD1	O75717	1129 aa	Predicted RBP	13.73	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	RGS3	P49796	1198 aa		13.73	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	MAP3K10	Q02779	954 aa		13.73	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	ANKRD23	Q86SG2	305 aa		13.73	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	IDI2	Q9BXS1	227 aa		13.73	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	API5	Q9BZZ5	524 aa	Known RBP	13.73	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	DENND2A	Q9ULE3	1009 aa		13.73	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	SEMA3E	O15041	775 aa		13.72	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	CT47B1	P0C2W7	299 aa	Predicted RBP	13.72	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	CYP2C8	P10632	490 aa		13.72	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	MTFR1	Q15390	333 aa		13.72	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	SLC9C1	Q4G0N8	1177 aa		13.72	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	PI16	Q6UXB8	463 aa		13.72	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	HOOK2	Q96ED9	719 aa		13.72	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	XAGE2	Q96GT9	111 aa		13.72	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	GNL3L	Q9NVN8	582 aa	Known RBP	13.72	□□□□□ -0.21
GRAMD1A-209	ENST00000598580		A0A1B0GUL7	405 aa		13.71	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	PTPRA	P18433	802 aa		13.71	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	PSMC4	P43686	418 aa		13.71	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	RHBDL3	P58872	404 aa		13.71	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	MTX1	Q13505	466 aa		13.71	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	HABP4	Q5JVS0	413 aa	Known RBP	13.71	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	TBC1D9	Q6ZT07	1266 aa		13.71	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	CCDC84	Q86UT8	332 aa	Predicted RBP	13.71	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	FAM163A	Q96GL9	167 aa	Predicted RBP	13.71	□□□□□ -0.21
GRAMD1A-209	ENST00000598580	SRGAP3	O43295	1099 aa		13.7	□□□□□ -0.22
GRAMD1A-209	ENST00000598580	ENTPD3	O75355	529 aa		13.7	□□□□□ -0.22
GRAMD1A-209	ENST00000598580	BCAR3	O75815	825 aa		13.7	□□□□□ -0.22
GRAMD1A-209	ENST00000598580	BCR	P11274	1271 aa		13.7	□□□□□ -0.22
GRAMD1A-209	ENST00000598580	OSBP	P22059	807 aa		13.7	□□□□□ -0.22
GRAMD1A-209	ENST00000598580	MECOM	Q03112	1051 aa		13.7	□□□□□ -0.22
GRAMD1A-209	ENST00000598580	RRP1B	Q14684	758 aa	Known RBP	13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms