RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 MAP2K2P36507 400 aa19.27■□□□□ 0.68
LIG3-215ENST00000592690 TNNI2P48788 182 aa19.27■□□□□ 0.68
LIG3-215ENST00000592690 MECOMQ03112 1051 aa19.27■□□□□ 0.68
LIG3-215ENST00000592690 CDC42EP5Q6NZY7 148 aa19.27■□□□□ 0.68
LIG3-215ENST00000592690 RASAL3Q86YV0 1011 aa19.27■□□□□ 0.68
LIG3-215ENST00000592690 ZNF384Q8TF68 577 aa19.27■□□□□ 0.68
LIG3-215ENST00000592690 KIF1BPQ96EK5 621 aa19.27■□□□□ 0.68
LIG3-215ENST00000592690 ZNF512BQ96KM6 892 aaPredicted RBP19.27■□□□□ 0.68
LIG3-215ENST00000592690 FOXN1O15353 648 aa19.26■□□□□ 0.67
LIG3-215ENST00000592690 NOGQ13253 232 aa19.26■□□□□ 0.67
LIG3-215ENST00000592690 SUPT20HL1Q3ZLR7 823 aa19.26■□□□□ 0.67
LIG3-215ENST00000592690 ARMC9Q7Z3E5 817 aa19.26■□□□□ 0.67
LIG3-215ENST00000592690 CCDC102AQ96A19 550 aa19.26■□□□□ 0.67
LIG3-215ENST00000592690 CRBNQ96SW2 442 aa19.26■□□□□ 0.67
LIG3-215ENST00000592690 FOCADQ5VW36 1801 aa19.25■□□□□ 0.67
LIG3-215ENST00000592690 MAP2K1Q02750 393 aaPredicted RBP19.25■□□□□ 0.67
LIG3-215ENST00000592690 FKBP1CQ5VVH2 108 aa19.25■□□□□ 0.67
LIG3-215ENST00000592690 FAM83AQ86UY5 434 aa19.25■□□□□ 0.67
LIG3-215ENST00000592690 NSUN4Q96CB9 384 aaKnown RBP19.25■□□□□ 0.67
LIG3-215ENST00000592690 BCL11AQ9H165 835 aa19.25■□□□□ 0.67
LIG3-215ENST00000592690 MROH7-TTC4A0A0A0MT08 1334 aa19.25■□□□□ 0.67
LIG3-215ENST00000592690 PPP1R12BO60237 982 aaPredicted RBP19.24■□□□□ 0.67
LIG3-215ENST00000592690 RAB11FIP3O75154 756 aa19.24■□□□□ 0.67
LIG3-215ENST00000592690 CYP2E1P05181 493 aaPredicted RBP19.24■□□□□ 0.67
LIG3-215ENST00000592690 ZAP70P43403 619 aa19.24■□□□□ 0.67
LIG3-215ENST00000592690 NFIAQ12857 509 aa19.24■□□□□ 0.67
LIG3-215ENST00000592690 MAP3K11Q16584 847 aa19.24■□□□□ 0.67
LIG3-215ENST00000592690 LDLRAD1Q5T700 205 aa19.24■□□□□ 0.67
LIG3-215ENST00000592690 USP40Q9NVE5 1235 aa19.24■□□□□ 0.67
LIG3-215ENST00000592690 RAI14Q9P0K7 980 aa19.24■□□□□ 0.67
LIG3-215ENST00000592690 RFX7Q2KHR2 1363 aa19.23■□□□□ 0.67
LIG3-215ENST00000592690 RPAP1Q9BWH6 1393 aaPredicted RBP19.23■□□□□ 0.67
LIG3-215ENST00000592690 USP2O75604 605 aaPredicted RBP19.23■□□□□ 0.67
LIG3-215ENST00000592690 BTDP43251 543 aa19.23■□□□□ 0.67
LIG3-215ENST00000592690 KIF23Q02241 960 aaPredicted RBP19.23■□□□□ 0.67
LIG3-215ENST00000592690 SLF2Q8IX21 1173 aa19.23■□□□□ 0.67
LIG3-215ENST00000592690 CLASRPQ8N2M8 674 aaKnown RBP19.23■□□□□ 0.67
LIG3-215ENST00000592690 AIDAQ96BJ3 306 aa19.23■□□□□ 0.67
LIG3-215ENST00000592690 FAM163AQ96GL9 167 aaPredicted RBP19.23■□□□□ 0.67
LIG3-215ENST00000592690 LRP2BPQ9P2M1 347 aa19.23■□□□□ 0.67
LIG3-215ENST00000592690 PCDHB15Q9Y5E8 787 aa19.23■□□□□ 0.67
LIG3-215ENST00000592690 NDUFB9Q9Y6M9 179 aa19.23■□□□□ 0.67
LIG3-215ENST00000592690 MYH7P12883 1935 aa19.23■□□□□ 0.67
LIG3-215ENST00000592690 TCP10Q12799 353 aa19.22■□□□□ 0.67
LIG3-215ENST00000592690 COL13A1Q5TAT6 717 aaPredicted RBP19.22■□□□□ 0.67
LIG3-215ENST00000592690 CLMNQ96JQ2 1002 aa19.22■□□□□ 0.67
LIG3-215ENST00000592690 PIH1D3Q9NQM4 214 aaKnown RBP19.22■□□□□ 0.67
LIG3-215ENST00000592690 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.22■□□□□ 0.67
LIG3-215ENST00000592690 FAM198AQ9UFP1 575 aa19.22■□□□□ 0.67
LIG3-215ENST00000592690 GPR75-ASB3A0A0A6YYF3 556 aa19.2■□□□□ 0.66
LIG3-215ENST00000592690 SMARCA5O60264 1052 aaPredicted RBP19.2■□□□□ 0.66
LIG3-215ENST00000592690 IFIT2P09913 472 aaKnown RBP19.2■□□□□ 0.66
LIG3-215ENST00000592690 IREB2P48200 963 aaKnown RBP19.2■□□□□ 0.66
LIG3-215ENST00000592690 GSTO1P78417 241 aa19.2■□□□□ 0.66
LIG3-215ENST00000592690 MKRN3Q13064 507 aaKnown RBP19.2■□□□□ 0.66
LIG3-215ENST00000592690 FAM151AQ8WW52 585 aa19.2■□□□□ 0.66
LIG3-215ENST00000592690 WDHD1O75717 1129 aaPredicted RBP19.19■□□□□ 0.66
LIG3-215ENST00000592690 LDHCP07864 332 aa19.19■□□□□ 0.66
LIG3-215ENST00000592690 HSPA8P11142 646 aaKnown RBP19.19■□□□□ 0.66
LIG3-215ENST00000592690 CTCFP49711 727 aaPredicted RBP19.19■□□□□ 0.66
LIG3-215ENST00000592690 RGS3P49796 1198 aa19.19■□□□□ 0.66
LIG3-215ENST00000592690 RHBDL3P58872 404 aa19.19■□□□□ 0.66
LIG3-215ENST00000592690 ZFPM1Q8IX07 1006 aa19.19■□□□□ 0.66
LIG3-215ENST00000592690 BEGAINQ9BUH8 593 aa19.19■□□□□ 0.66
LIG3-215ENST00000592690 IDI2Q9BXS1 227 aa19.19■□□□□ 0.66
LIG3-215ENST00000592690 LRRCC1Q9C099 1032 aa19.19■□□□□ 0.66
LIG3-215ENST00000592690 ANTXR1Q9H6X2 564 aa19.19■□□□□ 0.66
LIG3-215ENST00000592690 DCTPP1Q9H773 170 aa19.19■□□□□ 0.66
LIG3-215ENST00000592690 DDX4Q9NQI0 724 aaKnown RBP19.19■□□□□ 0.66
LIG3-215ENST00000592690 NAA16Q6N069 864 aaPredicted RBP19.18■□□□□ 0.66
LIG3-215ENST00000592690 ADGRA1Q86SQ6 560 aa19.18■□□□□ 0.66
LIG3-215ENST00000592690 CSRNP1Q96S65 589 aa19.18■□□□□ 0.66
LIG3-215ENST00000592690 TSKSQ9UJT2 592 aa19.18■□□□□ 0.66
LIG3-215ENST00000592690 CASP8AP2Q9UKL3 1982 aa19.18■□□□□ 0.66
LIG3-215ENST00000592690 SIPA1L1O43166 1804 aa19.18■□□□□ 0.66
LIG3-215ENST00000592690 LBX1P52954 281 aa19.17■□□□□ 0.66
LIG3-215ENST00000592690 SPRYD7Q5W111 196 aa19.17■□□□□ 0.66
LIG3-215ENST00000592690 ANKRD13AQ8IZ07 590 aa19.17■□□□□ 0.66
LIG3-215ENST00000592690 SLC10A4Q96EP9 437 aa19.17■□□□□ 0.66
LIG3-215ENST00000592690 WNK4Q96J92 1243 aa19.17■□□□□ 0.66
LIG3-215ENST00000592690 MYH1P12882 1939 aa19.17■□□□□ 0.66
LIG3-215ENST00000592690 ENTPD3O75355 529 aa19.16■□□□□ 0.66
LIG3-215ENST00000592690 IDH1O75874 414 aaKnown RBP19.16■□□□□ 0.66
LIG3-215ENST00000592690 PICALMQ13492 652 aa19.16■□□□□ 0.66
LIG3-215ENST00000592690 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.16■□□□□ 0.66
LIG3-215ENST00000592690 MIGA2Q7L4E1 593 aa19.16■□□□□ 0.66
LIG3-215ENST00000592690 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.16■□□□□ 0.66
LIG3-215ENST00000592690 ELP3Q9H9T3 547 aa19.16■□□□□ 0.66
LIG3-215ENST00000592690 AATFQ9NY61 560 aaKnown RBP eCLIP19.16■□□□□ 0.66
LIG3-215ENST00000592690 ATAD5Q96QE3 1844 aa19.16■□□□□ 0.66
LIG3-215ENST00000592690 UNCXA6NJT0 531 aa19.15■□□□□ 0.66
LIG3-215ENST00000592690 GJA5P36382 358 aa19.15■□□□□ 0.66
LIG3-215ENST00000592690 VGLL4Q14135 290 aa19.15■□□□□ 0.66
LIG3-215ENST00000592690 SH3BP5LQ7L8J4 393 aa19.15■□□□□ 0.66
LIG3-215ENST00000592690 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.15■□□□□ 0.66
LIG3-215ENST00000592690 HOOK2Q96ED9 719 aa19.15■□□□□ 0.66
LIG3-215ENST00000592690 DNAJC2Q99543 621 aaKnown RBP19.15■□□□□ 0.66
LIG3-215ENST00000592690 DOCK1Q14185 1865 aa19.15■□□□□ 0.66
LIG3-215ENST00000592690 ATRNL1Q5VV63 1379 aa19.15■□□□□ 0.66
LIG3-215ENST00000592690 MAP3K9P80192 1104 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms