RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 SHC4Q6S5L8 630 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 VSTM4Q8IW00 320 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 CNPY4Q8N129 248 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 DPF2Q92785 391 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 ZMYM6O95789 1325 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 ADAMTSL3P82987 1691 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 GORABQ5T7V8 394 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 RAB11FIP4Q86YS3 637 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 REXO1L1PQ8IX06 675 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 DNAI1Q9UI46 699 aa17.14■□□□□ 0.33
SMARCA4-219ENST00000592604 ISM2Q6H9L7 571 aa17.13■□□□□ 0.33
SMARCA4-219ENST00000592604 VPS37DQ86XT2 251 aa17.13■□□□□ 0.33
SMARCA4-219ENST00000592604 MAP3K14Q99558 947 aa17.13■□□□□ 0.33
SMARCA4-219ENST00000592604 ALG1Q9BT22 464 aa17.13■□□□□ 0.33
SMARCA4-219ENST00000592604 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.13■□□□□ 0.33
SMARCA4-219ENST00000592604 UBR2Q8IWV8 1755 aa17.13■□□□□ 0.33
SMARCA4-219ENST00000592604 GPAA1O43292 621 aa17.13■□□□□ 0.33
SMARCA4-219ENST00000592604 SCARF1Q14162 830 aa17.13■□□□□ 0.33
SMARCA4-219ENST00000592604 ARHGAP29Q52LW3 1261 aa17.13■□□□□ 0.33
SMARCA4-219ENST00000592604 RESP18Q5W5W9 173 aa17.13■□□□□ 0.33
SMARCA4-219ENST00000592604 ANGEL1Q9UNK9 670 aaKnown RBP17.13■□□□□ 0.33
SMARCA4-219ENST00000592604 CDKL5O76039 1030 aa17.12■□□□□ 0.33
SMARCA4-219ENST00000592604 SERPINC1P01008 464 aa17.12■□□□□ 0.33
SMARCA4-219ENST00000592604 ZAP70P43403 619 aa17.12■□□□□ 0.33
SMARCA4-219ENST00000592604 CCDC57Q2TAC2 916 aa17.12■□□□□ 0.33
SMARCA4-219ENST00000592604 KRT40Q6A162 431 aa17.12■□□□□ 0.33
SMARCA4-219ENST00000592604 ELOA2Q8IYF1 753 aaPredicted RBP17.12■□□□□ 0.33
SMARCA4-219ENST00000592604 ZRANB2O95218 330 aaKnown RBP eCLIP17.12■□□□□ 0.33
SMARCA4-219ENST00000592604 ISCA1Q9BUE6 129 aa17.12■□□□□ 0.33
SMARCA4-219ENST00000592604 NBPF3Q9H094 633 aa17.12■□□□□ 0.33
SMARCA4-219ENST00000592604 A1BGP04217 495 aa17.11■□□□□ 0.33
SMARCA4-219ENST00000592604 AIFM3Q96NN9 605 aa17.11■□□□□ 0.33
SMARCA4-219ENST00000592604 ZBTB3Q9H5J0 574 aa17.11■□□□□ 0.33
SMARCA4-219ENST00000592604 PNOCQ13519 176 aa17.11■□□□□ 0.33
SMARCA4-219ENST00000592604 CFAP100Q494V2 611 aa17.11■□□□□ 0.33
SMARCA4-219ENST00000592604 UBXN4Q92575 508 aa17.11■□□□□ 0.33
SMARCA4-219ENST00000592604 RNF216Q9NWF9 866 aaPredicted RBP17.11■□□□□ 0.33
SMARCA4-219ENST00000592604 SH2B2O14492 632 aaPredicted RBP17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 FANCGO15287 622 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 ZSCAN12O43309 604 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 CUTAO60888 179 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 PNMA6AP0CW24 399 aaPredicted RBP17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 METAP2P50579 478 aaKnown RBP eCLIP17.1■□□□□ 0.338e-8■■□□□ 13.3
SMARCA4-219ENST00000592604 TRDNQ13061 729 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 OLFM4Q6UX06 510 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 METTL16Q86W50 562 aaKnown RBP17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 TMEM139Q8IV31 216 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 UTP14AQ9BVJ6 771 aaKnown RBP17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 CCDC66A2RUB6 948 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 TADA3O75528 432 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 TOP1P11387 765 aaKnown RBP17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 ST7Q9NRC1 585 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 ARGLU1Q9NWB6 273 aaPredicted RBP17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 KCNG1Q9UIX4 513 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 EFCAB8A8MWE9 144 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 ARHGAP6O43182 974 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 TPM1P09493 284 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 CCDC102BQ68D86 513 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 FOXP4Q8IVH2 680 aaPredicted RBP17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 C19orf44Q9H6X5 657 aa17.1■□□□□ 0.33
SMARCA4-219ENST00000592604 AKAP11Q9UKA4 1901 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 TBX2Q13207 712 aaPredicted RBP17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 CPLX2Q6PUV4 134 aaKnown RBP17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 KRBA2Q6ZNG9 492 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 CYB5R4Q7L1T6 521 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 CNKSR2Q8WXI2 1034 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 FANCLQ9NW38 375 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 PARP3Q9Y6F1 533 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 PLA2G4AP47712 749 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 LONRF3Q496Y0 759 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 HSP90AB3PQ58FF7 597 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 APOA5Q6Q788 366 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 MPHOSPH8Q99549 860 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 NOL10Q9BSC4 688 aaKnown RBP17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 PLA2G12BQ9BX93 195 aa17.09■□□□□ 0.33
SMARCA4-219ENST00000592604 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.09■□□□□ 0.331e-11■□□□□ 11.1
SMARCA4-219ENST00000592604 KCPQ6ZWJ8 1503 aa17.08■□□□□ 0.33
SMARCA4-219ENST00000592604 ATP8B1O43520 1251 aa17.08■□□□□ 0.33
SMARCA4-219ENST00000592604 CDC27P30260 824 aa17.08■□□□□ 0.33
SMARCA4-219ENST00000592604 NTRK3Q16288 839 aa17.08■□□□□ 0.33
SMARCA4-219ENST00000592604 MNS1Q8NEH6 495 aa17.08■□□□□ 0.33
SMARCA4-219ENST00000592604 INTS13Q9NVM9 706 aa17.08■□□□□ 0.33
SMARCA4-219ENST00000592604 PCDHA5Q9Y5H7 936 aa17.08■□□□□ 0.33
SMARCA4-219ENST00000592604 ECM29Q5VYK3 1845 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 MAP3K15Q6ZN16 1313 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 ATRNO75882 1429 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 VWA3AA6NCI4 1184 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 ERVV-2B6SEH9 535 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 TMEM232C9JQI7 657 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 CSF1RP07333 972 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 ADD2P35612 726 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 MDM2Q00987 491 aaPredicted RBP17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 TRIM28Q13263 835 aaKnown RBP17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 TMCO3Q6UWJ1 677 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 PROSER2Q86WR7 435 aaPredicted RBP17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 TBC1D10CQ8IV04 446 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 CLIC6Q96NY7 704 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 KCNH3Q9ULD8 1083 aa17.08■□□□□ 0.32
SMARCA4-219ENST00000592604 DENND2AQ9ULE3 1009 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms