RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 FAM83AQ86UY5 434 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 ZSCAN29Q8IWY8 852 aaPredicted RBP13.3□□□□□ -0.28
CLIP3-203ENST00000586457 ANKRD13AQ8IZ07 590 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 RHPN1Q8TCX5 695 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 TMEM39BQ9GZU3 492 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 IL1RAPL2Q9NP60 686 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 DAGLAQ9Y4D2 1042 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 CSADQ9Y600 493 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.3□□□□□ -0.28
CLIP3-203ENST00000586457 ZNF646O15015 1829 aaPredicted RBP13.29□□□□□ -0.28
CLIP3-203ENST00000586457 BAG3O95817 575 aa13.29□□□□□ -0.28
CLIP3-203ENST00000586457 MCAMP43121 646 aa13.29□□□□□ -0.28
CLIP3-203ENST00000586457 RRP1P56182 461 aaKnown RBP13.29□□□□□ -0.28
CLIP3-203ENST00000586457 MECOMQ03112 1051 aa13.29□□□□□ -0.28
CLIP3-203ENST00000586457 MKRN3Q13064 507 aaKnown RBP13.29□□□□□ -0.28
CLIP3-203ENST00000586457 NAA16Q6N069 864 aaPredicted RBP13.29□□□□□ -0.28
CLIP3-203ENST00000586457 CDC42EP5Q6NZY7 148 aa13.29□□□□□ -0.28
CLIP3-203ENST00000586457 EAF2Q96CJ1 260 aaPredicted RBP13.29□□□□□ -0.28
CLIP3-203ENST00000586457 PAPPA2Q9BXP8 1791 aa13.29□□□□□ -0.28
CLIP3-203ENST00000586457 BTDP43251 543 aa13.28□□□□□ -0.28
CLIP3-203ENST00000586457 LBX1P52954 281 aa13.28□□□□□ -0.28
CLIP3-203ENST00000586457 SREBF2Q12772 1141 aa13.28□□□□□ -0.28
CLIP3-203ENST00000586457 PI16Q6UXB8 463 aa13.28□□□□□ -0.28
CLIP3-203ENST00000586457 RASAL3Q86YV0 1011 aa13.28□□□□□ -0.28
CLIP3-203ENST00000586457 FAM151AQ8WW52 585 aa13.28□□□□□ -0.28
CLIP3-203ENST00000586457 ZNF512BQ96KM6 892 aaPredicted RBP13.28□□□□□ -0.28
CLIP3-203ENST00000586457 LRRCC1Q9C099 1032 aa13.28□□□□□ -0.28
CLIP3-203ENST00000586457 DBNLQ9UJU6 430 aaKnown RBP13.28□□□□□ -0.28
CLIP3-203ENST00000586457 FZD1Q9UP38 647 aa13.28□□□□□ -0.28
CLIP3-203ENST00000586457 AOX1Q06278 1338 aa13.28□□□□□ -0.28
CLIP3-203ENST00000586457 ARAP2Q8WZ64 1704 aa13.27□□□□□ -0.28
CLIP3-203ENST00000586457 ECM29Q5VYK3 1845 aa13.27□□□□□ -0.28
CLIP3-203ENST00000586457 FAM155AB1AL88 458 aaPredicted RBP13.27□□□□□ -0.29
CLIP3-203ENST00000586457 USP2O75604 605 aaPredicted RBP13.27□□□□□ -0.29
CLIP3-203ENST00000586457 PLCG2P16885 1265 aa13.27□□□□□ -0.29
CLIP3-203ENST00000586457 MAP3K9P80192 1104 aa13.27□□□□□ -0.29
CLIP3-203ENST00000586457 PICALMQ13492 652 aa13.27□□□□□ -0.29
CLIP3-203ENST00000586457 LDLRAD1Q5T700 205 aa13.27□□□□□ -0.29
CLIP3-203ENST00000586457 FAM163AQ96GL9 167 aaPredicted RBP13.27□□□□□ -0.29
CLIP3-203ENST00000586457 MROH7-TTC4A0A0A0MT08 1334 aa13.27□□□□□ -0.29
CLIP3-203ENST00000586457 IGSF3O75054 1194 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 TRPA1O75762 1119 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 IDH1O75874 414 aaKnown RBP13.26□□□□□ -0.29
CLIP3-203ENST00000586457 MAP4K4O95819 1239 aaPredicted RBP13.26□□□□□ -0.29
CLIP3-203ENST00000586457 ZAP70P43403 619 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 INHBEP58166 350 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 MAP3K12Q12852 859 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 TTF1Q15361 905 aaPredicted RBP13.26□□□□□ -0.29
CLIP3-203ENST00000586457 MAP3K11Q16584 847 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 OTUD7BQ6GQQ9 843 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 SIRT2Q8IXJ6 389 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 TNS4Q8IZW8 715 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 GPATCH3Q96I76 525 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 CSRNP1Q96S65 589 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 ZNF341Q9BYN7 854 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 PRDM10Q9NQV6 1147 aa13.26□□□□□ -0.29
CLIP3-203ENST00000586457 GPR75-ASB3A0A0A6YYF3 556 aa13.25□□□□□ -0.29
CLIP3-203ENST00000586457 MANSC4A6NHS7 340 aaPredicted RBP13.25□□□□□ -0.29
CLIP3-203ENST00000586457 ENTPD3O75355 529 aa13.25□□□□□ -0.29
CLIP3-203ENST00000586457 WDHD1O75717 1129 aaPredicted RBP13.25□□□□□ -0.29
CLIP3-203ENST00000586457 CYP2E1P05181 493 aaPredicted RBP13.25□□□□□ -0.29
CLIP3-203ENST00000586457 ZBTB48P10074 688 aaPredicted RBP13.25□□□□□ -0.29
CLIP3-203ENST00000586457 RGS3P49796 1198 aa13.25□□□□□ -0.29
CLIP3-203ENST00000586457 COL13A1Q5TAT6 717 aaPredicted RBP13.25□□□□□ -0.29
CLIP3-203ENST00000586457 MIGA2Q7L4E1 593 aa13.25□□□□□ -0.29
CLIP3-203ENST00000586457 NSUN4Q96CB9 384 aaKnown RBP13.25□□□□□ -0.29
CLIP3-203ENST00000586457 TEPSINQ96N21 525 aa13.25□□□□□ -0.29
CLIP3-203ENST00000586457 WRNIP1Q96S55 665 aa13.25□□□□□ -0.29
CLIP3-203ENST00000586457 ELP3Q9H9T3 547 aa13.25□□□□□ -0.29
CLIP3-203ENST00000586457 TLR7Q9NYK1 1049 aaKnown RBP13.25□□□□□ -0.29
CLIP3-203ENST00000586457 TSKSQ9UJT2 592 aa13.25□□□□□ -0.29
CLIP3-203ENST00000586457 GAKO14976 1311 aa13.24□□□□□ -0.29
CLIP3-203ENST00000586457 SPRYD7Q5W111 196 aa13.24□□□□□ -0.29
CLIP3-203ENST00000586457 TEX11Q8IYF3 940 aa13.24□□□□□ -0.29
CLIP3-203ENST00000586457 CLMNQ96JQ2 1002 aa13.24□□□□□ -0.29
CLIP3-203ENST00000586457 ZIC5Q96T25 663 aa13.24□□□□□ -0.29
CLIP3-203ENST00000586457 DNAJC2Q99543 621 aaKnown RBP13.24□□□□□ -0.29
CLIP3-203ENST00000586457 TRIM34Q9BYJ4 488 aa13.24□□□□□ -0.29
CLIP3-203ENST00000586457 SAGE1Q9NXZ1 904 aa13.24□□□□□ -0.29
CLIP3-203ENST00000586457 ALDH1A1P00352 501 aa13.23□□□□□ -0.29
CLIP3-203ENST00000586457 HSPA8P11142 646 aaKnown RBP13.23□□□□□ -0.29
CLIP3-203ENST00000586457 CYP7A1P22680 504 aa13.23□□□□□ -0.29
CLIP3-203ENST00000586457 NFIAQ12857 509 aa13.23□□□□□ -0.29
CLIP3-203ENST00000586457 CERS3Q8IU89 383 aa13.23□□□□□ -0.29
CLIP3-203ENST00000586457 OPTNQ96CV9 577 aa13.23□□□□□ -0.29
CLIP3-203ENST00000586457 WNK4Q96J92 1243 aa13.23□□□□□ -0.29
CLIP3-203ENST00000586457 CRBNQ96SW2 442 aa13.23□□□□□ -0.29
CLIP3-203ENST00000586457 IDI2Q9BXS1 227 aa13.23□□□□□ -0.29
CLIP3-203ENST00000586457 RNF186Q9NXI6 227 aa13.23□□□□□ -0.29
CLIP3-203ENST00000586457 AATFQ9NY61 560 aaKnown RBP eCLIP13.23□□□□□ -0.29
CLIP3-203ENST00000586457 AK9Q5TCS8 1911 aa13.23□□□□□ -0.29
CLIP3-203ENST00000586457 MYH2Q9UKX2 1941 aa13.22□□□□□ -0.29
CLIP3-203ENST00000586457 TM4SF4P48230 202 aa13.22□□□□□ -0.29
CLIP3-203ENST00000586457 AAMPQ13685 434 aa13.22□□□□□ -0.29
CLIP3-203ENST00000586457 TMED8Q6PL24 325 aaPredicted RBP13.22□□□□□ -0.29
CLIP3-203ENST00000586457 CDAN1Q8IWY9 1227 aa13.22□□□□□ -0.29
CLIP3-203ENST00000586457 MAGEB6Q8N7X4 407 aa13.22□□□□□ -0.29
CLIP3-203ENST00000586457 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.22□□□□□ -0.29
CLIP3-203ENST00000586457 FAM198AQ9UFP1 575 aa13.22□□□□□ -0.29
CLIP3-203ENST00000586457 PCNTO95613 3336 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms