RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 GJA5P36382 358 aa18.7■□□□□ 0.58
CLIP3-202ENST00000585466 NFIAQ12857 509 aa18.7■□□□□ 0.58
CLIP3-202ENST00000585466 SPATA5Q8NB90 893 aa18.7■□□□□ 0.58
CLIP3-202ENST00000585466 EAF2Q96CJ1 260 aaPredicted RBP18.7■□□□□ 0.58
CLIP3-202ENST00000585466 TLR7Q9NYK1 1049 aaKnown RBP18.7■□□□□ 0.58
CLIP3-202ENST00000585466 DBNLQ9UJU6 430 aaKnown RBP18.7■□□□□ 0.58
CLIP3-202ENST00000585466 DDX19BQ9UMR2 479 aa18.7■□□□□ 0.58
CLIP3-202ENST00000585466 MAST2Q6P0Q8 1798 aa18.7■□□□□ 0.58
CLIP3-202ENST00000585466 TM4SF4P48230 202 aa18.69■□□□□ 0.58
CLIP3-202ENST00000585466 TNNI2P48788 182 aa18.69■□□□□ 0.58
CLIP3-202ENST00000585466 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.69■□□□□ 0.58
CLIP3-202ENST00000585466 ZGPATQ8N5A5 531 aaKnown RBP18.69■□□□□ 0.58
CLIP3-202ENST00000585466 FAM163AQ96GL9 167 aaPredicted RBP18.69■□□□□ 0.58
CLIP3-202ENST00000585466 FAM198AQ9UFP1 575 aa18.69■□□□□ 0.58
CLIP3-202ENST00000585466 MECOMQ03112 1051 aa18.68■□□□□ 0.58
CLIP3-202ENST00000585466 MKRN3Q13064 507 aaKnown RBP18.68■□□□□ 0.58
CLIP3-202ENST00000585466 PDE3AQ14432 1141 aa18.68■□□□□ 0.58
CLIP3-202ENST00000585466 TBC1D9Q6ZT07 1266 aa18.68■□□□□ 0.58
CLIP3-202ENST00000585466 REM2Q8IYK8 340 aaPredicted RBP18.68■□□□□ 0.58
CLIP3-202ENST00000585466 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.68■□□□□ 0.58
CLIP3-202ENST00000585466 WNK4Q96J92 1243 aa18.68■□□□□ 0.58
CLIP3-202ENST00000585466 ABCF2Q9UG63 623 aa18.68■□□□□ 0.58
CLIP3-202ENST00000585466 EXOC6BQ9Y2D4 811 aa18.68■□□□□ 0.58
CLIP3-202ENST00000585466 ATRNL1Q5VV63 1379 aa18.68■□□□□ 0.58
CLIP3-202ENST00000585466 DOCK2Q92608 1830 aa18.67■□□□□ 0.58
CLIP3-202ENST00000585466 TRPA1O75762 1119 aa18.67■□□□□ 0.58
CLIP3-202ENST00000585466 IREB2P48200 963 aaKnown RBP18.67■□□□□ 0.58
CLIP3-202ENST00000585466 OS9Q13438 667 aaPredicted RBP18.67■□□□□ 0.58
CLIP3-202ENST00000585466 NSUN4Q96CB9 384 aaKnown RBP18.67■□□□□ 0.58
CLIP3-202ENST00000585466 ZNF512BQ96KM6 892 aaPredicted RBP18.67■□□□□ 0.58
CLIP3-202ENST00000585466 TMOD2Q9NZR1 351 aa18.67■□□□□ 0.58
CLIP3-202ENST00000585466 UQCRFS1P1P0C7P4 283 aa18.66■□□□□ 0.58
CLIP3-202ENST00000585466 ZBTB48P10074 688 aaPredicted RBP18.66■□□□□ 0.58
CLIP3-202ENST00000585466 GORABQ5T7V8 394 aa18.66■□□□□ 0.58
CLIP3-202ENST00000585466 ZFPM1Q8IX07 1006 aa18.66■□□□□ 0.58
CLIP3-202ENST00000585466 RPAP2Q8IXW5 612 aaPredicted RBP18.66■□□□□ 0.58
CLIP3-202ENST00000585466 ANKRD13AQ8IZ07 590 aa18.66■□□□□ 0.58
CLIP3-202ENST00000585466 FAM151AQ8WW52 585 aa18.66■□□□□ 0.58
CLIP3-202ENST00000585466 SLC10A4Q96EP9 437 aa18.66■□□□□ 0.58
CLIP3-202ENST00000585466 IDI2Q9BXS1 227 aa18.66■□□□□ 0.58
CLIP3-202ENST00000585466 MROH7-TTC4A0A0A0MT08 1334 aa18.66■□□□□ 0.58
CLIP3-202ENST00000585466 CDK5RAP2Q96SN8 1893 aa18.65■□□□□ 0.58
CLIP3-202ENST00000585466 GPR75-ASB3A0A0A6YYF3 556 aa18.65■□□□□ 0.58
CLIP3-202ENST00000585466 WDHD1O75717 1129 aaPredicted RBP18.65■□□□□ 0.58
CLIP3-202ENST00000585466 RHBDL3P58872 404 aa18.65■□□□□ 0.58
CLIP3-202ENST00000585466 VGLL4Q14135 290 aa18.65■□□□□ 0.58
CLIP3-202ENST00000585466 SPTY2D1Q68D10 685 aaPredicted RBP18.65■□□□□ 0.58
CLIP3-202ENST00000585466 ERICH6Q7L0X2 663 aa18.65■□□□□ 0.58
CLIP3-202ENST00000585466 DZIP1Q86YF9 867 aaKnown RBP18.65■□□□□ 0.58
CLIP3-202ENST00000585466 CNKSR2Q8WXI2 1034 aa18.65■□□□□ 0.58
CLIP3-202ENST00000585466 CCDC8Q9H0W5 538 aaPredicted RBP18.65■□□□□ 0.58
CLIP3-202ENST00000585466 USP40Q9NVE5 1235 aa18.65■□□□□ 0.58
CLIP3-202ENST00000585466 AK9Q5TCS8 1911 aa18.64■□□□□ 0.58
CLIP3-202ENST00000585466 CYP2E1P05181 493 aaPredicted RBP18.64■□□□□ 0.57
CLIP3-202ENST00000585466 SH3BP5LQ7L8J4 393 aa18.64■□□□□ 0.57
CLIP3-202ENST00000585466 DDX4Q9NQI0 724 aaKnown RBP18.64■□□□□ 0.57
CLIP3-202ENST00000585466 SNRKQ9NRH2 765 aa18.64■□□□□ 0.57
CLIP3-202ENST00000585466 SNCAIPQ9Y6H5 919 aa18.64■□□□□ 0.57
CLIP3-202ENST00000585466 BTDP43251 543 aa18.63■□□□□ 0.57
CLIP3-202ENST00000585466 MAP3K9P80192 1104 aa18.63■□□□□ 0.57
CLIP3-202ENST00000585466 TCP10Q12799 353 aa18.63■□□□□ 0.57
CLIP3-202ENST00000585466 TTC39AQ5SRH9 613 aa18.63■□□□□ 0.57
CLIP3-202ENST00000585466 RHPN1Q8TCX5 695 aa18.63■□□□□ 0.57
CLIP3-202ENST00000585466 CFHR5Q9BXR6 569 aa18.63■□□□□ 0.57
CLIP3-202ENST00000585466 R3HDMLQ9H3Y0 253 aa18.63■□□□□ 0.57
CLIP3-202ENST00000585466 ELP3Q9H9T3 547 aa18.63■□□□□ 0.57
CLIP3-202ENST00000585466 FOCADQ5VW36 1801 aa18.63■□□□□ 0.57
CLIP3-202ENST00000585466 IGF2BP3O00425 579 aaKnown RBP eCLIP18.62■□□□□ 0.57
CLIP3-202ENST00000585466 RGS3P49796 1198 aa18.62■□□□□ 0.57
CLIP3-202ENST00000585466 CCDC158Q5M9N0 1113 aa18.62■□□□□ 0.57
CLIP3-202ENST00000585466 ERC1Q8IUD2 1116 aa18.62■□□□□ 0.57
CLIP3-202ENST00000585466 OPTNQ96CV9 577 aa18.62■□□□□ 0.57
CLIP3-202ENST00000585466 MS4A4AQ96JQ5 239 aa18.62■□□□□ 0.57
CLIP3-202ENST00000585466 PIH1D3Q9NQM4 214 aaKnown RBP18.62■□□□□ 0.57
CLIP3-202ENST00000585466 ZNF112Q9UJU3 913 aa18.62■□□□□ 0.57
CLIP3-202ENST00000585466 SIPA1L1O43166 1804 aa18.62■□□□□ 0.57
CLIP3-202ENST00000585466 TESPA1A2RU30 521 aaPredicted RBP18.61■□□□□ 0.57
CLIP3-202ENST00000585466 MANSC4A6NHS7 340 aaPredicted RBP18.61■□□□□ 0.57
CLIP3-202ENST00000585466 ENTPD3O75355 529 aa18.61■□□□□ 0.57
CLIP3-202ENST00000585466 ZAP70P43403 619 aa18.61■□□□□ 0.57
CLIP3-202ENST00000585466 SREBF2Q12772 1141 aa18.61■□□□□ 0.57
CLIP3-202ENST00000585466 MIGA2Q7L4E1 593 aa18.61■□□□□ 0.57
CLIP3-202ENST00000585466 ADGRA1Q86SQ6 560 aa18.61■□□□□ 0.57
CLIP3-202ENST00000585466 PTPN18Q99952 460 aa18.61■□□□□ 0.57
CLIP3-202ENST00000585466 IL1RAPL2Q9NP60 686 aa18.61■□□□□ 0.57
CLIP3-202ENST00000585466 TBC1D8O95759 1140 aa18.6■□□□□ 0.57
CLIP3-202ENST00000585466 AACSQ86V21 672 aa18.6■□□□□ 0.57
CLIP3-202ENST00000585466 IFNL1Q8IU54 200 aa18.6■□□□□ 0.57
CLIP3-202ENST00000585466 SLF2Q8IX21 1173 aa18.6■□□□□ 0.57
CLIP3-202ENST00000585466 ZKSCAN4Q969J2 545 aaPredicted RBP18.6■□□□□ 0.57
CLIP3-202ENST00000585466 WRNIP1Q96S55 665 aa18.6■□□□□ 0.57
CLIP3-202ENST00000585466 RAI14Q9P0K7 980 aa18.6■□□□□ 0.57
CLIP3-202ENST00000585466 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.6■□□□□ 0.57
CLIP3-202ENST00000585466 DDTLA6NHG4 134 aaPredicted RBP18.59■□□□□ 0.57
CLIP3-202ENST00000585466 SPDYE5A6NIY4 337 aa18.59■□□□□ 0.57
CLIP3-202ENST00000585466 NPM3O75607 178 aaKnown RBP18.59■□□□□ 0.57
CLIP3-202ENST00000585466 SLURP2P0DP57 97 aa18.59■□□□□ 0.57
CLIP3-202ENST00000585466 INPP5BP32019 993 aa18.59■□□□□ 0.57
CLIP3-202ENST00000585466 MAP3K10Q02779 954 aa18.59■□□□□ 0.57
CLIP3-202ENST00000585466 HSP90AB4PQ58FF6 505 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms