RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 PGAP2Q9UHJ9 254 aa12.36□□□□□ -0.43
LIG3-203ENST00000585370 MAST3O60307 1309 aa12.36□□□□□ -0.43
LIG3-203ENST00000585370 SHTN1A0MZ66 631 aa12.35□□□□□ -0.43
LIG3-203ENST00000585370 IDH1O75874 414 aaKnown RBP12.35□□□□□ -0.43
LIG3-203ENST00000585370 PDIA4P13667 645 aaKnown RBP12.35□□□□□ -0.43
LIG3-203ENST00000585370 PDE6AP16499 860 aa12.35□□□□□ -0.43
LIG3-203ENST00000585370 GNAT2P19087 354 aa12.35□□□□□ -0.43
LIG3-203ENST00000585370 HIBADHP31937 336 aaKnown RBP12.35□□□□□ -0.43
LIG3-203ENST00000585370 LBX1P52954 281 aa12.35□□□□□ -0.43
LIG3-203ENST00000585370 TNIP1Q15025 636 aa12.35□□□□□ -0.43
LIG3-203ENST00000585370 NFKBIBQ15653 356 aa12.35□□□□□ -0.43
LIG3-203ENST00000585370 CHMP4CQ96CF2 233 aa12.35□□□□□ -0.43
LIG3-203ENST00000585370 FAM84BQ96KN1 310 aaPredicted RBP12.35□□□□□ -0.43
LIG3-203ENST00000585370 NEK1Q96PY6 1258 aa12.35□□□□□ -0.43
LIG3-203ENST00000585370 PIH1D3Q9NQM4 214 aaKnown RBP12.35□□□□□ -0.43
LIG3-203ENST00000585370 CNOT7Q9UIV1 285 aaKnown RBP12.35□□□□□ -0.43
LIG3-203ENST00000585370 NSFL1CQ9UNZ2 370 aaKnown RBP12.35□□□□□ -0.43
LIG3-203ENST00000585370 COL4A1P02462 1669 aa12.35□□□□□ -0.43
LIG3-203ENST00000585370 DUOX1Q9NRD9 1551 aa12.35□□□□□ -0.43
LIG3-203ENST00000585370 RPAP1Q9BWH6 1393 aaPredicted RBP12.34□□□□□ -0.43
LIG3-203ENST00000585370 M0R2C6 588 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 ATP2B4P23634 1241 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 GPSM2P81274 684 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 MAP2K1Q02750 393 aaPredicted RBP12.34□□□□□ -0.43
LIG3-203ENST00000585370 ALX1Q15699 326 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 IMMTQ16891 758 aaKnown RBP12.34□□□□□ -0.43
LIG3-203ENST00000585370 CYP4F22Q6NT55 531 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 PI16Q6UXB8 463 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 CCDC129Q6ZRS4 1044 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 TRPM4Q8TD43 1214 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 CAPNS2Q96L46 248 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 GLIS2Q9BZE0 524 aaPredicted RBP12.34□□□□□ -0.43
LIG3-203ENST00000585370 LRP2BPQ9P2M1 347 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 POLLQ9UGP5 575 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.34□□□□□ -0.43
LIG3-203ENST00000585370 TLL2Q9Y6L7 1015 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 AKAP11Q9UKA4 1901 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 XDHP47989 1333 aa12.34□□□□□ -0.43
LIG3-203ENST00000585370 TCRBV5S4A2TA0A5A2 114 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 RIMBP2O15034 1052 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 GPAA1O43292 621 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 CELF2O95319 508 aaKnown RBP12.33□□□□□ -0.44
LIG3-203ENST00000585370 CYP21A2P08686 494 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 HSPA8P11142 646 aaKnown RBP12.33□□□□□ -0.44
LIG3-203ENST00000585370 PTMSP20962 102 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 RPS6KB1P23443 525 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 AK2P54819 239 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 RAB3GAP1Q15042 981 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 ADCK5Q3MIX3 580 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 SPTY2D1Q68D10 685 aaPredicted RBP12.33□□□□□ -0.44
LIG3-203ENST00000585370 SAPCD2Q86UD0 394 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 ZGPATQ8N5A5 531 aaKnown RBP12.33□□□□□ -0.44
LIG3-203ENST00000585370 ZC3H15Q8WU90 426 aaKnown RBP12.33□□□□□ -0.44
LIG3-203ENST00000585370 GPR101Q96P66 508 aaPredicted RBP12.33□□□□□ -0.44
LIG3-203ENST00000585370 DBNDD1Q9H9R9 158 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 KCNQ5Q9NR82 932 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 ANKIB1Q9P2G1 1089 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 ZBTB12Q9Y330 459 aaPredicted RBP12.33□□□□□ -0.44
LIG3-203ENST00000585370 TRPM7Q96QT4 1865 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 ZNF532Q9HCE3 1301 aa12.33□□□□□ -0.44
LIG3-203ENST00000585370 LRRC37AA6NMS7 1700 aa12.32□□□□□ -0.44
LIG3-203ENST00000585370 PATL2C9JE40 543 aaKnown RBP12.32□□□□□ -0.44
LIG3-203ENST00000585370 C6orf229H3BNL8 230 aa12.32□□□□□ -0.44
LIG3-203ENST00000585370 SNAP23O00161 211 aa12.32□□□□□ -0.44
LIG3-203ENST00000585370 PSMD14O00487 310 aa12.32□□□□□ -0.44
LIG3-203ENST00000585370 FRAT2O75474 233 aaPredicted RBP12.32□□□□□ -0.44
LIG3-203ENST00000585370 ECE1P42892 770 aa12.32□□□□□ -0.44
LIG3-203ENST00000585370 GYG1P46976 350 aa12.32□□□□□ -0.44
LIG3-203ENST00000585370 GRM1Q13255 1194 aa12.32□□□□□ -0.44
LIG3-203ENST00000585370 PAXIP1Q6ZW49 1069 aaPredicted RBP12.32□□□□□ -0.44
LIG3-203ENST00000585370 GBP4Q96PP9 640 aa12.32□□□□□ -0.44
LIG3-203ENST00000585370 PUS7LQ9H0K6 701 aaKnown RBP12.32□□□□□ -0.44
LIG3-203ENST00000585370 PODXL2Q9NZ53 605 aa12.32□□□□□ -0.44
LIG3-203ENST00000585370 ZMYM6O95789 1325 aa12.32□□□□□ -0.44
LIG3-203ENST00000585370 H7C1D1 291 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 AOC2O75106 756 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 FGAP02671 866 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 NBR1Q14596 966 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 DOK7Q18PE1 504 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 DLK2Q6UY11 383 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 CLEC17AQ6ZS10 378 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 CDC37L1Q7L3B6 337 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 DHX32Q7L7V1 743 aaKnown RBP12.31□□□□□ -0.44
LIG3-203ENST00000585370 SAMD7Q7Z3H4 446 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 ZNF804AQ7Z570 1209 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 MICALL2Q8IY33 904 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 FBXL16Q8N461 479 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 MAGEB6Q8N7X4 407 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 TBC1D16Q8TBP0 767 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 DPF2Q92785 391 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 STRBPQ96SI9 672 aaKnown RBP12.31□□□□□ -0.44
LIG3-203ENST00000585370 NACAP1Q9BZK3 213 aa12.31□□□□□ -0.44
LIG3-203ENST00000585370 ZNF213O14771 459 aa12.3□□□□□ -0.44
LIG3-203ENST00000585370 EGFRP00533 1210 aa12.3□□□□□ -0.44
LIG3-203ENST00000585370 CHGBP05060 677 aa12.3□□□□□ -0.44
LIG3-203ENST00000585370 USP48Q86UV5 1035 aa12.3□□□□□ -0.44
LIG3-203ENST00000585370 WDR66Q8TBY9 1149 aa12.3□□□□□ -0.44
LIG3-203ENST00000585370 GGA1Q9UJY5 639 aa12.3□□□□□ -0.44
LIG3-203ENST00000585370 WDR19Q8NEZ3 1342 aa12.3□□□□□ -0.44
LIG3-203ENST00000585370 MYH7P12883 1935 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms