RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 CC2D2BQ6DHV5 1058 aa13.14□□□□□ -0.31
SS18-221ENST00000582448 PHTF2Q8N3S3 785 aa13.14□□□□□ -0.31
SS18-221ENST00000582448 PRDM10Q9NQV6 1147 aa13.14□□□□□ -0.31
SS18-221ENST00000582448 HACL1Q9UJ83 578 aa13.14□□□□□ -0.31
SS18-221ENST00000582448 COL3A1P02461 1466 aaPredicted RBP13.14□□□□□ -0.31
SS18-221ENST00000582448 PASKQ96RG2 1323 aa13.13□□□□□ -0.31
SS18-221ENST00000582448 ZNF541Q9H0D2 1346 aa13.13□□□□□ -0.31
SS18-221ENST00000582448 H3BM21 787 aa13.13□□□□□ -0.31
SS18-221ENST00000582448 NPR1P16066 1061 aa13.13□□□□□ -0.31
SS18-221ENST00000582448 GTF2E1P29083 439 aaPredicted RBP13.13□□□□□ -0.31
SS18-221ENST00000582448 EPHX2P34913 555 aa13.13□□□□□ -0.31
SS18-221ENST00000582448 FKBP4Q02790 459 aaKnown RBP eCLIP13.13□□□□□ -0.31
SS18-221ENST00000582448 DEFB115Q30KQ5 88 aa13.13□□□□□ -0.31
SS18-221ENST00000582448 ERICH6BQ5W0A0 696 aa13.13□□□□□ -0.31
SS18-221ENST00000582448 MAP1SQ66K74 1059 aaPredicted RBP13.13□□□□□ -0.31
SS18-221ENST00000582448 POLMQ9NP87 494 aaPredicted RBP13.13□□□□□ -0.31
SS18-221ENST00000582448 NIP7Q9Y221 180 aaKnown RBP eCLIP13.13□□□□□ -0.31
SS18-221ENST00000582448 SLX4Q8IY92 1834 aa13.13□□□□□ -0.31
SS18-221ENST00000582448 ANKRD31Q8N7Z5 1873 aa13.12□□□□□ -0.31
SS18-221ENST00000582448 E9PSI1 815 aa13.12□□□□□ -0.31
SS18-221ENST00000582448 CCDC27Q2M243 656 aa13.12□□□□□ -0.31
SS18-221ENST00000582448 WASHC4Q2M389 1173 aa13.12□□□□□ -0.31
SS18-221ENST00000582448 FOXD4L5Q5VV16 416 aaPredicted RBP13.12□□□□□ -0.31
SS18-221ENST00000582448 TPTE2Q6XPS3 522 aa13.12□□□□□ -0.31
SS18-221ENST00000582448 NPAS3Q8IXF0 933 aa13.12□□□□□ -0.31
SS18-221ENST00000582448 CNTROBQ8N137 903 aa13.12□□□□□ -0.31
SS18-221ENST00000582448 SYNE4Q8N205 404 aa13.12□□□□□ -0.31
SS18-221ENST00000582448 C7orf43Q8WVR3 580 aa13.12□□□□□ -0.31
SS18-221ENST00000582448 ABT1Q9ULW3 272 aaKnown RBP13.12□□□□□ -0.31
SS18-221ENST00000582448 ZNF652Q9Y2D9 606 aa13.12□□□□□ -0.31
SS18-221ENST00000582448 RNF123Q5XPI4 1314 aa13.12□□□□□ -0.31
SS18-221ENST00000582448 ATP5J2-PTCD1G3V325 749 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 FLIIQ13045 1269 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 GRM1Q13255 1194 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.11□□□□□ -0.31
SS18-221ENST00000582448 CLEC4GQ6UXB4 293 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 RTKN2Q8IZC4 609 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 RNF217Q8TC41 542 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 RTF1Q92541 710 aaKnown RBP13.11□□□□□ -0.31
SS18-221ENST00000582448 PHACTR3Q96KR7 559 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 OSBPL3Q9H4L5 887 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 RCAN3Q9UKA8 241 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 GJA3Q9Y6H8 435 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 ERBB4Q15303 1308 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 ZNF521Q96K83 1311 aa13.11□□□□□ -0.31
SS18-221ENST00000582448 FER1L6Q2WGJ9 1857 aa13.1□□□□□ -0.31
SS18-221ENST00000582448 PRKAR2BP31323 418 aa13.1□□□□□ -0.31
SS18-221ENST00000582448 IARSP41252 1262 aaKnown RBP13.1□□□□□ -0.31
SS18-221ENST00000582448 WDR63Q8IWG1 891 aa13.1□□□□□ -0.31
SS18-221ENST00000582448 COL11A2P13942 1736 aaPredicted RBP13.1□□□□□ -0.31
SS18-221ENST00000582448 VIRMAQ69YN4 1812 aaKnown RBP13.09□□□□□ -0.31
SS18-221ENST00000582448 TRAK2O60296 914 aa13.09□□□□□ -0.31
SS18-221ENST00000582448 PPFIA3O75145 1194 aa13.09□□□□□ -0.31
SS18-221ENST00000582448 SNRPA1P09661 255 aaKnown RBP13.09□□□□□ -0.31
SS18-221ENST00000582448 ALDH1B1P30837 517 aa13.09□□□□□ -0.31
SS18-221ENST00000582448 MCM10Q7L590 875 aa13.09□□□□□ -0.31
SS18-221ENST00000582448 PNMA8AQ86V59 439 aaPredicted RBP13.09□□□□□ -0.31
SS18-221ENST00000582448 WWC1Q8IX03 1113 aa13.09□□□□□ -0.31
SS18-221ENST00000582448 MYH16Q9H6N6 1097 aa13.09□□□□□ -0.31
SS18-221ENST00000582448 DICER1Q9UPY3 1922 aaKnown RBP13.09□□□□□ -0.31
SS18-221ENST00000582448 WDR33Q9C0J8 1336 aaKnown RBP13.09□□□□□ -0.31
SS18-221ENST00000582448 UBR2Q8IWV8 1755 aa13.08□□□□□ -0.32
SS18-221ENST00000582448 TCERG1O14776 1098 aaKnown RBP13.08□□□□□ -0.32
SS18-221ENST00000582448 HSPA8P11142 646 aaKnown RBP13.08□□□□□ -0.32
SS18-221ENST00000582448 PTSQ03393 145 aa13.08□□□□□ -0.32
SS18-221ENST00000582448 CALD1Q05682 793 aaKnown RBP13.08□□□□□ -0.32
SS18-221ENST00000582448 SLFN5Q08AF3 891 aa13.08□□□□□ -0.32
SS18-221ENST00000582448 DCTN1Q14203 1278 aa13.08□□□□□ -0.32
SS18-221ENST00000582448 HLFQ16534 295 aa13.08□□□□□ -0.32
SS18-221ENST00000582448 JDP2Q8WYK2 163 aa13.08□□□□□ -0.32
SS18-221ENST00000582448 RRP7AQ9Y3A4 280 aaKnown RBP13.08□□□□□ -0.32
SS18-221ENST00000582448 CACNA1SQ13698 1873 aa13.08□□□□□ -0.32
SS18-221ENST00000582448 A0A1W2PRU2 124 aa13.07□□□□□ -0.32
SS18-221ENST00000582448 FZD9O00144 591 aa13.07□□□□□ -0.32
SS18-221ENST00000582448 EIF6P56537 245 aaKnown RBP13.07□□□□□ -0.32
SS18-221ENST00000582448 MAP2K1Q02750 393 aaPredicted RBP13.07□□□□□ -0.32
SS18-221ENST00000582448 FMR1Q06787 632 aaKnown RBP eCLIP13.07□□□□□ -0.32
SS18-221ENST00000582448 LMOD3Q0VAK6 560 aa13.07□□□□□ -0.32
SS18-221ENST00000582448 ABHD8Q96I13 439 aa13.07□□□□□ -0.32
SS18-221ENST00000582448 PLEKHF1Q96S99 279 aa13.07□□□□□ -0.32
SS18-221ENST00000582448 SCN7AQ01118 1682 aa13.06□□□□□ -0.32
SS18-221ENST00000582448 KLRG2A4D1S0 409 aaPredicted RBP13.06□□□□□ -0.32
SS18-221ENST00000582448 RASSF10A6NK89 507 aa13.06□□□□□ -0.32
SS18-221ENST00000582448 CCDC85CA6NKD9 419 aa13.06□□□□□ -0.32
SS18-221ENST00000582448 LMOD1P29536 600 aaPredicted RBP13.06□□□□□ -0.32
SS18-221ENST00000582448 TMPOP42166 694 aaKnown RBP13.06□□□□□ -0.32
SS18-221ENST00000582448 RIPK4P57078 832 aa13.06□□□□□ -0.32
SS18-221ENST00000582448 SLFNL1Q499Z3 407 aa13.06□□□□□ -0.32
SS18-221ENST00000582448 NBPF10Q6P3W6 841 aaKnown RBP13.06□□□□□ -0.32
SS18-221ENST00000582448 RNF135Q8IUD6 432 aa13.06□□□□□ -0.32
SS18-221ENST00000582448 GPC2Q8N158 579 aa13.06□□□□□ -0.32
SS18-221ENST00000582448 NBPF15Q8N660 670 aa13.06□□□□□ -0.32
SS18-221ENST00000582448 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.06□□□□□ -0.32
SS18-221ENST00000582448 DDX21Q9NR30 783 aaKnown RBP eCLIP13.06□□□□□ -0.32
SS18-221ENST00000582448 MIS18AQ9NYP9 233 aa13.06□□□□□ -0.32
SS18-221ENST00000582448 CEMIPQ8WUJ3 1361 aa13.06□□□□□ -0.32
SS18-221ENST00000582448 WIPF1O43516 503 aa13.05□□□□□ -0.32
SS18-221ENST00000582448 DUSP27Q5VZP5 1158 aa13.05□□□□□ -0.32
SS18-221ENST00000582448 CYP2U1Q7Z449 544 aa13.05□□□□□ -0.32
SS18-221ENST00000582448 MEN1O00255 615 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms