RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 LONRF2Q1L5Z9 754 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 LRRFIP1Q32MZ4 808 aaKnown RBP2.82□□□□□ -1.96
CHD3-217ENST00000574022 BRDTQ58F21 947 aaPredicted RBP2.82□□□□□ -1.96
CHD3-217ENST00000574022 CT47A1Q5JQC4 288 aaPredicted RBP2.82□□□□□ -1.96
CHD3-217ENST00000574022 PERM1Q5SV97 790 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 RASIP1Q5U651 963 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 HGSNATQ68CP4 663 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 LLGL2Q6P1M3 1020 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 FIGNL1Q6PIW4 674 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 DHX32Q7L7V1 743 aaKnown RBP2.82□□□□□ -1.96
CHD3-217ENST00000574022 EEPD1Q7L9B9 569 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 TTC6Q86TZ1 520 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 NIM1KQ8IY84 436 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 PMM1Q92871 262 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 NINJ1Q92982 152 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 BHMTQ93088 406 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 MFSD3Q96ES6 412 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 SGSM3Q96HU1 749 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 C8orf48Q96LL4 319 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 NSUN5Q96P11 429 aaKnown RBP2.82□□□□□ -1.96
CHD3-217ENST00000574022 SLC26A8Q96RN1 970 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 TM9SF2Q99805 663 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 SPATA9Q9BWV2 254 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 EMILIN2Q9BXX0 1053 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 PBX4Q9BYU1 374 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 MUC3BQ9H195 1237 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 CAAP1Q9H8G2 361 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 TOR4AQ9NXH8 423 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 PRR12Q9ULL5 1215 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 THRAP3Q9Y2W1 955 aaKnown RBP2.82□□□□□ -1.96
CHD3-217ENST00000574022 PCDHGC4Q9Y5F7 938 aa2.82□□□□□ -1.96
CHD3-217ENST00000574022 CCDC163A0A0D9SF12 145 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 DCDC2BA2VCK2 349 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 ALG1L2C9J202 215 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 J3QW42 95 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 EFSO43281 561 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 GDF9O60383 454 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 GRIN3BO60391 1043 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 MAPTP10636 758 aaKnown RBP2.81□□□□□ -1.96
CHD3-217ENST00000574022 GUCY2CP25092 1073 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 SOX5P35711 763 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 NRLP54845 237 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 TNP2Q05952 138 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 PCDH1Q08174 1060 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 SPEM2Q0P670 501 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 MLECQ14165 292 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 LBRQ14739 615 aaKnown RBP2.81□□□□□ -1.96
CHD3-217ENST00000574022 NCAPHQ15003 741 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 ZNF423Q2M1K9 1284 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 TM4SF20Q53R12 229 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 TMEM67Q5HYA8 995 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 ZC3H12BQ5HYM0 836 aaKnown RBP2.81□□□□□ -1.96
CHD3-217ENST00000574022 AXDND1Q5T1B0 1012 aaPredicted RBP2.81□□□□□ -1.96
CHD3-217ENST00000574022 SCARA3Q6AZY7 606 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 DDX42Q86XP3 938 aaKnown RBP eCLIP2.81□□□□□ -1.96
CHD3-217ENST00000574022 THNSL2Q86YJ6 484 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 SULF2Q8IWU5 870 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 SMC5Q8IY18 1101 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 ZBTB38Q8NAP3 1195 aaPredicted RBP2.81□□□□□ -1.96
CHD3-217ENST00000574022 ZSCAN1Q8NBB4 408 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 GRIN3AQ8TCU5 1115 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 DDX54Q8TDD1 881 aaKnown RBP2.81□□□□□ -1.96
CHD3-217ENST00000574022 BSNDQ8WZ55 320 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 TRERF1Q96PN7 1200 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 POP1Q99575 1024 aaKnown RBP2.81□□□□□ -1.96
CHD3-217ENST00000574022 PCGF6Q9BYE7 350 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 RASSF4Q9H2L5 321 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 CLEC4MQ9H2X3 399 aaPredicted RBP2.81□□□□□ -1.96
CHD3-217ENST00000574022 ANTXR1Q9H6X2 564 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 STRN4Q9NRL3 753 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 MARK1Q9P0L2 795 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 MCM8Q9UJA3 840 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 POLR3KQ9Y2Y1 108 aaPredicted RBP2.81□□□□□ -1.96
CHD3-217ENST00000574022 SLC12A7Q9Y666 1083 aa2.81□□□□□ -1.96
CHD3-217ENST00000574022 WASHC2CQ9Y4E1 1318 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 A0A087X0B3 334 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 IQCA1LA6NCM1 817 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 ZBTB42B2RXF5 422 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 TNFRSF10AO00220 468 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 IRS4O14654 1257 aaPredicted RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 KCNQ2O43526 872 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 PDE8AO60658 829 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 RFPL3O75679 317 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 EIF3JO75822 258 aaKnown RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 ALDH1L1O75891 902 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 SMNDC1O75940 238 aaKnown RBP eCLIP2.8□□□□□ -1.96
CHD3-217ENST00000574022 B3GALT4O96024 378 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 GHRHP01286 108 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 POU3F3P20264 500 aaPredicted RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 PMLP29590 882 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 STAT3P40763 770 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 ATP11AP98196 1134 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 MLLT1Q03111 559 aaPredicted RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 PTPN11Q06124 597 aaPredicted RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 PABPC4Q13310 644 aaKnown RBP eCLIP2.8□□□□□ -1.96
CHD3-217ENST00000574022 BIRC2Q13490 618 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 NEUROD1Q13562 356 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 SCARF1Q14162 830 aa2.8□□□□□ -1.96
CHD3-217ENST00000574022 FAM50AQ14320 339 aaKnown RBP2.8□□□□□ -1.96
CHD3-217ENST00000574022 CBX2Q14781 532 aaPredicted RBP2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms