RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ELNP15502 786 aa14.07□□□□□ -0.16
VPS53-207ENST00000570510 FLT3LGP49771 235 aa14.07□□□□□ -0.16
VPS53-207ENST00000570510 CHAF1AQ13111 956 aaPredicted RBP14.07□□□□□ -0.16
VPS53-207ENST00000570510 MTMR10Q9NXD2 777 aa14.07□□□□□ -0.16
VPS53-207ENST00000570510 GABRQQ9UN88 632 aa14.07□□□□□ -0.16
VPS53-207ENST00000570510 IRS2Q9Y4H2 1338 aa14.07□□□□□ -0.16
VPS53-207ENST00000570510 SLC4A2P04920 1241 aa14.06□□□□□ -0.16
VPS53-207ENST00000570510 GYG1P46976 350 aa14.06□□□□□ -0.16
VPS53-207ENST00000570510 BCAMP50895 628 aa14.06□□□□□ -0.16
VPS53-207ENST00000570510 LRIT3Q3SXY7 679 aa14.06□□□□□ -0.16
VPS53-207ENST00000570510 FAM83AQ86UY5 434 aa14.06□□□□□ -0.16
VPS53-207ENST00000570510 TDHQ8IZJ6 230 aa14.06□□□□□ -0.16
VPS53-207ENST00000570510 TDRD7Q8NHU6 1098 aaKnown RBP14.06□□□□□ -0.16
VPS53-207ENST00000570510 GDF15Q99988 308 aa14.06□□□□□ -0.16
VPS53-207ENST00000570510 UBE2OQ9C0C9 1292 aaKnown RBP14.06□□□□□ -0.16
VPS53-207ENST00000570510 ADAMTS8Q9UP79 889 aa14.06□□□□□ -0.16
VPS53-207ENST00000570510 CYP2C8P10632 490 aa14.05□□□□□ -0.16
VPS53-207ENST00000570510 SYN1P17600 705 aa14.05□□□□□ -0.16
VPS53-207ENST00000570510 INPP5BP32019 993 aa14.05□□□□□ -0.16
VPS53-207ENST00000570510 HDLBPQ00341 1268 aaKnown RBP14.05□□□□□ -0.16
VPS53-207ENST00000570510 FKBP5Q13451 457 aaPredicted RBP14.05□□□□□ -0.16
VPS53-207ENST00000570510 PXYLP1Q8TE99 480 aa14.05□□□□□ -0.16
VPS53-207ENST00000570510 TBC1D22AQ8WUA7 517 aa14.05□□□□□ -0.16
VPS53-207ENST00000570510 ADGRA2Q96PE1 1338 aa14.05□□□□□ -0.16
VPS53-207ENST00000570510 UBE4AQ14139 1066 aa14.04□□□□□ -0.16
VPS53-207ENST00000570510 LINS1Q8NG48 757 aa14.04□□□□□ -0.16
VPS53-207ENST00000570510 SMCR8Q8TEV9 937 aaPredicted RBP14.04□□□□□ -0.16
VPS53-207ENST00000570510 DNAAF4Q8WXU2 420 aa14.04□□□□□ -0.16
VPS53-207ENST00000570510 COA7Q96BR5 231 aa14.04□□□□□ -0.16
VPS53-207ENST00000570510 ZNF594Q96JF6 807 aaPredicted RBP14.04□□□□□ -0.16
VPS53-207ENST00000570510 IQSEC3Q9UPP2 1182 aaPredicted RBP14.04□□□□□ -0.16
VPS53-207ENST00000570510 BCRP11274 1271 aa14.03□□□□□ -0.16
VPS53-207ENST00000570510 MAGEA10P43363 369 aaPredicted RBP14.03□□□□□ -0.16
VPS53-207ENST00000570510 CAVIN4Q5BKX8 364 aa14.03□□□□□ -0.16
VPS53-207ENST00000570510 FKBP1CQ5VVH2 108 aa14.03□□□□□ -0.16
VPS53-207ENST00000570510 LMBR1LQ6UX01 489 aa14.03□□□□□ -0.16
VPS53-207ENST00000570510 FASTKD5Q7L8L6 764 aaKnown RBP14.03□□□□□ -0.16
VPS53-207ENST00000570510 TSPYL6Q8N831 410 aa14.03□□□□□ -0.16
VPS53-207ENST00000570510 FAM84BQ96KN1 310 aaPredicted RBP14.03□□□□□ -0.16
VPS53-207ENST00000570510 NBPF3Q9H094 633 aa14.03□□□□□ -0.16
VPS53-207ENST00000570510 PAK6Q9NQU5 681 aaPredicted RBP14.03□□□□□ -0.16
VPS53-207ENST00000570510 KCNH4Q9UQ05 1017 aa14.03□□□□□ -0.16
VPS53-207ENST00000570510 MAST3O60307 1309 aa14.03□□□□□ -0.16
VPS53-207ENST00000570510 MYBBP1AQ9BQG0 1328 aaKnown RBP14.03□□□□□ -0.16
VPS53-207ENST00000570510 APAF1O14727 1248 aa14.02□□□□□ -0.17
VPS53-207ENST00000570510 CASP7P55210 303 aa14.02□□□□□ -0.17
VPS53-207ENST00000570510 GADL1Q6ZQY3 521 aa14.02□□□□□ -0.17
VPS53-207ENST00000570510 G2E3Q7L622 706 aa14.02□□□□□ -0.17
VPS53-207ENST00000570510 ANKLE1Q8NAG6 615 aa14.02□□□□□ -0.17
VPS53-207ENST00000570510 DIS3LQ8TF46 1054 aaKnown RBP14.02□□□□□ -0.17
VPS53-207ENST00000570510 ZDHHC15Q96MV8 337 aa14.02□□□□□ -0.17
VPS53-207ENST00000570510 PICK1Q9NRD5 415 aa14.02□□□□□ -0.17
VPS53-207ENST00000570510 CXCL11O14625 94 aa14.01□□□□□ -0.17
VPS53-207ENST00000570510 FOXO4P98177 505 aa14.01□□□□□ -0.17
VPS53-207ENST00000570510 FLIIQ13045 1269 aa14.01□□□□□ -0.17
VPS53-207ENST00000570510 IRF5Q13568 498 aa14.01□□□□□ -0.17
VPS53-207ENST00000570510 CRISPLD2Q9H0B8 497 aa14.01□□□□□ -0.17
VPS53-207ENST00000570510 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.01□□□□□ -0.17
VPS53-207ENST00000570510 RPTORQ8N122 1335 aa14□□□□□ -0.17
VPS53-207ENST00000570510 TCP10Q12799 353 aa14□□□□□ -0.17
VPS53-207ENST00000570510 TWISTNBQ3B726 338 aaPredicted RBP14□□□□□ -0.17
VPS53-207ENST00000570510 C11orf49Q9H6J7 331 aa14□□□□□ -0.17
VPS53-207ENST00000570510 HMX1Q9NP08 348 aaPredicted RBP14□□□□□ -0.17
VPS53-207ENST00000570510 ZHX2Q9Y6X8 837 aa14□□□□□ -0.17
VPS53-207ENST00000570510 ARAP2Q8WZ64 1704 aa14□□□□□ -0.17
VPS53-207ENST00000570510 UNC80Q8N2C7 3258 aa14□□□□□ -0.17
VPS53-207ENST00000570510 GRIK5Q16478 980 aa13.99□□□□□ -0.17
VPS53-207ENST00000570510 FAM151AQ8WW52 585 aa13.99□□□□□ -0.17
VPS53-207ENST00000570510 FAM161BQ96MY7 647 aa13.99□□□□□ -0.17
VPS53-207ENST00000570510 MRIQ9BWK5 157 aa13.99□□□□□ -0.17
VPS53-207ENST00000570510 APOBEC3HQ6NTF7 200 aaKnown RBP13.98□□□□□ -0.17
VPS53-207ENST00000570510 GPAT2Q6NUI2 795 aa13.98□□□□□ -0.17
VPS53-207ENST00000570510 ANKRD13CQ8N6S4 541 aa13.98□□□□□ -0.17
VPS53-207ENST00000570510 TSR2Q969E8 191 aaKnown RBP13.98□□□□□ -0.17
VPS53-207ENST00000570510 PRDM6Q9NQX0 595 aa13.98□□□□□ -0.17
VPS53-207ENST00000570510 C9orf78Q9NZ63 289 aaPredicted RBP13.98□□□□□ -0.17
VPS53-207ENST00000570510 RPAP1Q9BWH6 1393 aaPredicted RBP13.97□□□□□ -0.17
VPS53-207ENST00000570510 MROH5Q6ZUA9 1318 aa13.97□□□□□ -0.17
VPS53-207ENST00000570510 HMGCRP04035 888 aa13.97□□□□□ -0.17
VPS53-207ENST00000570510 MOGSQ13724 837 aa13.97□□□□□ -0.17
VPS53-207ENST00000570510 NOL9Q5SY16 702 aaKnown RBP13.97□□□□□ -0.17
VPS53-207ENST00000570510 HHIPL2Q6UWX4 724 aa13.97□□□□□ -0.17
VPS53-207ENST00000570510 ZNF112Q9UJU3 913 aa13.97□□□□□ -0.17
VPS53-207ENST00000570510 SUGT1Q9Y2Z0 365 aa13.97□□□□□ -0.17
VPS53-207ENST00000570510 A0A0G2JLL6 359 aaPredicted RBP13.96□□□□□ -0.17
VPS53-207ENST00000570510 METTL24Q5JXM2 366 aa13.96□□□□□ -0.17
VPS53-207ENST00000570510 PRRT2Q7Z6L0 340 aaPredicted RBP13.96□□□□□ -0.17
VPS53-207ENST00000570510 FBXO33Q7Z6M2 555 aa13.96□□□□□ -0.17
VPS53-207ENST00000570510 LBHD1Q9BQE6 289 aaPredicted RBP13.96□□□□□ -0.17
VPS53-207ENST00000570510 PNMA3Q9UL41 463 aa13.96□□□□□ -0.17
VPS53-207ENST00000570510 SLC45A1Q9Y2W3 748 aa13.96□□□□□ -0.17
VPS53-207ENST00000570510 LRRFIP2Q9Y608 721 aaKnown RBP13.96□□□□□ -0.17
VPS53-207ENST00000570510 MDM2Q00987 491 aaPredicted RBP13.95□□□□□ -0.18
VPS53-207ENST00000570510 ZNF697Q5TEC3 545 aa13.95□□□□□ -0.18
VPS53-207ENST00000570510 ZSCAN29Q8IWY8 852 aaPredicted RBP13.95□□□□□ -0.18
VPS53-207ENST00000570510 TRIM75PA6NK02 468 aa13.94□□□□□ -0.18
VPS53-207ENST00000570510 GRM8O00222 908 aa13.94□□□□□ -0.18
VPS53-207ENST00000570510 PTPRAP18433 802 aa13.94□□□□□ -0.18
VPS53-207ENST00000570510 EPHA10Q5JZY3 1008 aa13.94□□□□□ -0.18
VPS53-207ENST00000570510 FAM109BQ6ICB4 259 aaPredicted RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms