RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 CEP85Q6P2H3 762 aa9.68□□□□□ -0.86
CDH3-209ENST00000569080 ANKRD13AQ8IZ07 590 aa9.68□□□□□ -0.86
CDH3-209ENST00000569080 AKAP2Q9Y2D5 859 aa9.68□□□□□ -0.86
CDH3-209ENST00000569080 NOP58Q9Y2X3 529 aaKnown RBP9.68□□□□□ -0.86
CDH3-209ENST00000569080 BRCA2P51587 3418 aa9.68□□□□□ -0.86
CDH3-209ENST00000569080 MYO5AQ9Y4I1 1855 aaKnown RBP9.68□□□□□ -0.86
CDH3-209ENST00000569080 IGF2BP3O00425 579 aaKnown RBP eCLIP9.67□□□□□ -0.86
CDH3-209ENST00000569080 MCAMP43121 646 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 TNNI2P48788 182 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 SREBF2Q12772 1141 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 TNNI3KQ59H18 835 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 NOM1Q5C9Z4 860 aaKnown RBP9.67□□□□□ -0.86
CDH3-209ENST00000569080 CNKSR2Q8WXI2 1034 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 MCOLN1Q9GZU1 580 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 R3HDMLQ9H3Y0 253 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 GPR108Q9NPR9 543 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 TMOD2Q9NZR1 351 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 HMG20BQ9P0W2 317 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 FAM198AQ9UFP1 575 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 SNCAIPQ9Y6H5 919 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 FPGT-TNNI3KV9GXZ4 949 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 CDK5RAP2Q96SN8 1893 aa9.67□□□□□ -0.86
CDH3-209ENST00000569080 TNRC18O15417 2968 aaPredicted RBP9.66□□□□□ -0.86
CDH3-209ENST00000569080 SIPA1L1O43166 1804 aa9.66□□□□□ -0.86
CDH3-209ENST00000569080 FOCADQ5VW36 1801 aa9.66□□□□□ -0.86
CDH3-209ENST00000569080 MROH7-TTC4A0A0A0MT08 1334 aa9.66□□□□□ -0.86
CDH3-209ENST00000569080 TESPA1A2RU30 521 aaPredicted RBP9.66□□□□□ -0.86
CDH3-209ENST00000569080 MANSC4A6NHS7 340 aaPredicted RBP9.66□□□□□ -0.86
CDH3-209ENST00000569080 G3BP1Q13283 466 aaKnown RBP eCLIP9.66□□□□□ -0.86
CDH3-209ENST00000569080 ZGPATQ8N5A5 531 aaKnown RBP9.66□□□□□ -0.86
CDH3-209ENST00000569080 FAM151AQ8WW52 585 aa9.66□□□□□ -0.86
CDH3-209ENST00000569080 SLC10A4Q96EP9 437 aa9.66□□□□□ -0.86
CDH3-209ENST00000569080 FAM163AQ96GL9 167 aaPredicted RBP9.66□□□□□ -0.86
CDH3-209ENST00000569080 MS4A4AQ96JQ5 239 aa9.66□□□□□ -0.86
CDH3-209ENST00000569080 SPDYE5A6NIY4 337 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 WDHD1O75717 1129 aaPredicted RBP9.65□□□□□ -0.86
CDH3-209ENST00000569080 TBC1D8O95759 1140 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 RHBDL3P58872 404 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 MECOMQ03112 1051 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 DZIP1Q86YF9 867 aaKnown RBP9.65□□□□□ -0.86
CDH3-209ENST00000569080 IFNL1Q8IU54 200 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 ZFPM1Q8IX07 1006 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 SPATA5Q8NB90 893 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 ZNF296Q8WUU4 475 aaPredicted RBP9.65□□□□□ -0.86
CDH3-209ENST00000569080 NSUN4Q96CB9 384 aaKnown RBP9.65□□□□□ -0.86
CDH3-209ENST00000569080 OPTNQ96CV9 577 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 NEUROD6Q96NK8 337 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 PTPN18Q99952 460 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 DBNDD2Q9BQY9 259 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 IDI2Q9BXS1 227 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 ELP3Q9H9T3 547 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 DDX4Q9NQI0 724 aaKnown RBP9.65□□□□□ -0.86
CDH3-209ENST00000569080 TLR7Q9NYK1 1049 aaKnown RBP9.65□□□□□ -0.86
CDH3-209ENST00000569080 ABCF2Q9UG63 623 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 DBNLQ9UJU6 430 aaKnown RBP9.65□□□□□ -0.86
CDH3-209ENST00000569080 DOCK1Q14185 1865 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 PHIPQ8WWQ0 1821 aa9.65□□□□□ -0.86
CDH3-209ENST00000569080 COL2A1P02458 1487 aaPredicted RBP9.65□□□□□ -0.87
CDH3-209ENST00000569080 PTPRFP10586 1907 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 GPR75-ASB3A0A0A6YYF3 556 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 GPR25O00155 361 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 SURF6O75683 361 aaKnown RBP9.64□□□□□ -0.87
CDH3-209ENST00000569080 BTDP43251 543 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 MAP3K9P80192 1104 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 TCP10Q12799 353 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 DGKZQ13574 1117 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 TBC1D9Q6ZT07 1266 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 SH3BP5LQ7L8J4 393 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 BRI3BPQ8WY22 251 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 ZNF512BQ96KM6 892 aaPredicted RBP9.64□□□□□ -0.87
CDH3-209ENST00000569080 WRNIP1Q96S55 665 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 ZBTB40Q9NUA8 1239 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 USP40Q9NVE5 1235 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 ZNF112Q9UJU3 913 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 RCAN3Q9UKA8 241 aa9.64□□□□□ -0.87
CDH3-209ENST00000569080 DDX60LQ5H9U9 1706 aaKnown RBP9.64□□□□□ -0.87
CDH3-209ENST00000569080 MKI67P46013 3256 aaKnown RBP9.64□□□□□ -0.87
CDH3-209ENST00000569080 AK9Q5TCS8 1911 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 ENTPD3O75355 529 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 ALDH1A1P00352 501 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 UQCRFS1P1P0C7P4 283 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 INPP5BP32019 993 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 RGS3P49796 1198 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 INHBEP58166 350 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 C20orf194Q5TEA3 1177 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 DCAF15Q66K64 600 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 SPTY2D1Q68D10 685 aaPredicted RBP9.63□□□□□ -0.87
CDH3-209ENST00000569080 ERICH6Q7L0X2 663 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 CTU1Q7Z7A3 348 aaKnown RBP9.63□□□□□ -0.87
CDH3-209ENST00000569080 SIRT2Q8IXJ6 389 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 ZKSCAN4Q969J2 545 aaPredicted RBP9.63□□□□□ -0.87
CDH3-209ENST00000569080 EAF2Q96CJ1 260 aaPredicted RBP9.63□□□□□ -0.87
CDH3-209ENST00000569080 HOOK2Q96ED9 719 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 OTUD5Q96G74 571 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 EXOC6BQ9Y2D4 811 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 COG6Q9Y2V7 657 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 CSADQ9Y600 493 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 ZSWIM8A7E2V4 1837 aa9.63□□□□□ -0.87
CDH3-209ENST00000569080 ATAD5Q96QE3 1844 aa9.62□□□□□ -0.87
CDH3-209ENST00000569080 DDTLA6NHG4 134 aaPredicted RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms