RNA–Protein interactions for RNA: ENST00000568566.5

TSC2-223, Transcript of TSC complex subunit 2, human

TSL 3

Gene TSC2, Length 542 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TSC2-223	ENST00000568566	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	NBPF11	Q86T75	865 aa		10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	FAM43A	Q8N2R8	423 aa		10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	VGLL2	Q8N8G2	317 aa		10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	SSH3	Q8TE77	659 aa		10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	SH3TC2	Q8TF17	1288 aa		10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	OTUD5	Q96G74	571 aa		10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	ARHGAP39	Q9C0H5	1083 aa		10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	TMEM39B	Q9GZU3	492 aa		10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	TDRD3	Q9H7E2	651 aa	Known RBP	10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	ZFYVE28	Q9HCC9	887 aa		10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	CNNM1	Q9NRU3	951 aa		10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	ZNF70	Q9UC06	446 aa	Predicted RBP	10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	DDX19B	Q9UMR2	479 aa		10.39	□□□□□ -0.75
TSC2-223	ENST00000568566	TCP10L2	B9ZVM9	353 aa		10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	ECM2	O94769	699 aa	Predicted RBP	10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	MS4A1	P11836	297 aa		10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	ADORA1	P30542	326 aa		10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	GTF2A2	P52657	109 aa		10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	FKBP1A	P62942	108 aa	Known RBP	10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	TFCP2	Q12800	502 aa		10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	ARHGEF6	Q15052	776 aa		10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	MFSD14B	Q5SR56	506 aa		10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	TEPSIN	Q96N21	525 aa		10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	COPRS	Q9NQ92	184 aa		10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	TTF2	Q9UNY4	1162 aa	Known RBP	10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	EXOC6B	Q9Y2D4	811 aa		10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	CUL9	Q8IWT3	2517 aa		10.38	□□□□□ -0.75
TSC2-223	ENST00000568566	APBB1	O00213	710 aa		10.37	□□□□□ -0.75
TSC2-223	ENST00000568566	CHRDL2	Q6WN34	429 aa		10.37	□□□□□ -0.75
TSC2-223	ENST00000568566	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
TSC2-223	ENST00000568566	BCL11A	Q9H165	835 aa		10.37	□□□□□ -0.75
TSC2-223	ENST00000568566	SERPINA10	Q9UK55	444 aa		10.37	□□□□□ -0.75
TSC2-223	ENST00000568566	CSAD	Q9Y600	493 aa		10.37	□□□□□ -0.75
TSC2-223	ENST00000568566	FAM205A	Q6ZU69	1335 aa		10.36	□□□□□ -0.75
TSC2-223	ENST00000568566	SURF6	O75683	361 aa	Known RBP	10.36	□□□□□ -0.75
TSC2-223	ENST00000568566	IGHD	P01880	384 aa		10.36	□□□□□ -0.75
TSC2-223	ENST00000568566	GYG1	P46976	350 aa		10.36	□□□□□ -0.75
TSC2-223	ENST00000568566	TIMM10	P62072	90 aa		10.36	□□□□□ -0.75
TSC2-223	ENST00000568566	MAP3K9	P80192	1104 aa		10.36	□□□□□ -0.75
TSC2-223	ENST00000568566	LACTB	P83111	547 aa	Predicted RBP	10.36	□□□□□ -0.75
TSC2-223	ENST00000568566	METTL24	Q5JXM2	366 aa		10.36	□□□□□ -0.75
TSC2-223	ENST00000568566	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.36	□□□□□ -0.75
TSC2-223	ENST00000568566	SMARCA5	O60264	1052 aa	Predicted RBP	10.35	□□□□□ -0.75
TSC2-223	ENST00000568566	WDHD1	O75717	1129 aa	Predicted RBP	10.35	□□□□□ -0.75
TSC2-223	ENST00000568566	FGFR2	P21802	821 aa		10.35	□□□□□ -0.75
TSC2-223	ENST00000568566	CRK	P46108	304 aa		10.35	□□□□□ -0.75
TSC2-223	ENST00000568566	BCAM	P50895	628 aa		10.35	□□□□□ -0.75
TSC2-223	ENST00000568566	CACNB3	P54284	484 aa		10.35	□□□□□ -0.75
TSC2-223	ENST00000568566	KIF22	Q14807	665 aa		10.35	□□□□□ -0.75
TSC2-223	ENST00000568566	GRIK5	Q16478	980 aa		10.35	□□□□□ -0.75
TSC2-223	ENST00000568566	SHISA4	Q96DD7	197 aa		10.35	□□□□□ -0.75
TSC2-223	ENST00000568566	SNCAIP	Q9Y6H5	919 aa		10.35	□□□□□ -0.75
TSC2-223	ENST00000568566	SPDYE5	A6NIY4	337 aa		10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	BTBD19	C9JJ37	291 aa		10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	TLR2	O60603	784 aa		10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	PDE8B	O95263	885 aa		10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	CETP	P11597	493 aa		10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	HIBADH	P31937	336 aa	Known RBP	10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	TNNI2	P48788	182 aa		10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	MTFR1	Q15390	333 aa		10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	TDRD7	Q8NHU6	1098 aa	Known RBP	10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	DPF3	Q92784	378 aa		10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	ZKSCAN4	Q969J2	545 aa	Predicted RBP	10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	FAM84B	Q96KN1	310 aa	Predicted RBP	10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	WRNIP1	Q96S55	665 aa		10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	IL1RAPL2	Q9NP60	686 aa		10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	TLR7	Q9NYK1	1049 aa	Known RBP	10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	RBM27	Q9P2N5	1060 aa	Known RBP	10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	NOP58	Q9Y2X3	529 aa	Known RBP	10.34	□□□□□ -0.75
TSC2-223	ENST00000568566	LAMA3	Q16787	3333 aa		10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	IRF6	O14896	467 aa		10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	CIAO1	O76071	339 aa		10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	CENPB	P07199	599 aa	Predicted RBP	10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	CHAF1A	Q13111	956 aa	Predicted RBP	10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	SNAPC2	Q13487	334 aa		10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	FBXO33	Q7Z6M2	555 aa		10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	ERO1B	Q86YB8	467 aa		10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	RPAP2	Q8IXW5	612 aa	Predicted RBP	10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	EAF2	Q96CJ1	260 aa	Predicted RBP	10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	CCDC8	Q9H0W5	538 aa	Predicted RBP	10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	CEP126	Q9P2H0	1117 aa		10.33	□□□□□ -0.76
TSC2-223	ENST00000568566	MROH5	Q6ZUA9	1318 aa		10.33	□□□□□ -0.76
TSC2-223	ENST00000568566		A0A0C4DFX4	3053 aa		10.32	□□□□□ -0.76
TSC2-223	ENST00000568566	CTGF	P29279	349 aa		10.32	□□□□□ -0.76
TSC2-223	ENST00000568566	IL15	P40933	162 aa	Predicted RBP	10.32	□□□□□ -0.76
TSC2-223	ENST00000568566	PHKA1	P46020	1223 aa		10.32	□□□□□ -0.76
TSC2-223	ENST00000568566	UBE4A	Q14139	1066 aa		10.32	□□□□□ -0.76
TSC2-223	ENST00000568566	ATP2B3	Q16720	1220 aa		10.32	□□□□□ -0.76
TSC2-223	ENST00000568566	OTUD7A	Q8TE49	926 aa	Predicted RBP	10.32	□□□□□ -0.76
TSC2-223	ENST00000568566	TRIM47	Q96LD4	638 aa		10.32	□□□□□ -0.76
TSC2-223	ENST00000568566	ZCCHC17	Q9NP64	241 aa	Known RBP	10.32	□□□□□ -0.76
TSC2-223	ENST00000568566	CPA4	Q9UI42	421 aa		10.32	□□□□□ -0.76
TSC2-223	ENST00000568566	GNRH1	P01148	92 aa		10.31	□□□□□ -0.76
TSC2-223	ENST00000568566	PSMC4	P43686	418 aa		10.31	□□□□□ -0.76
TSC2-223	ENST00000568566	PPIL2	Q13356	520 aa		10.31	□□□□□ -0.76
TSC2-223	ENST00000568566	OS9	Q13438	667 aa	Predicted RBP	10.31	□□□□□ -0.76
TSC2-223	ENST00000568566	PI16	Q6UXB8	463 aa		10.31	□□□□□ -0.76
TSC2-223	ENST00000568566	SKAP1	Q86WV1	359 aa		10.31	□□□□□ -0.76

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