RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 ZCCHC17Q9NP64 241 aaKnown RBP20.96■□□□□ 0.95
CLN3-231ENST00000568422 HTTP42858 3142 aa20.96■□□□□ 0.95
CLN3-231ENST00000568422 SLC34A2O95436 690 aa20.95■□□□□ 0.94
CLN3-231ENST00000568422 LDHBP07195 334 aaKnown RBP20.95■□□□□ 0.94
CLN3-231ENST00000568422 CETPP11597 493 aa20.95■□□□□ 0.94
CLN3-231ENST00000568422 RARSP54136 660 aaKnown RBP20.95■□□□□ 0.94
CLN3-231ENST00000568422 TAF1CQ15572 869 aaPredicted RBP20.95■□□□□ 0.94
CLN3-231ENST00000568422 CD99L2Q8TCZ2 262 aa20.95■□□□□ 0.94
CLN3-231ENST00000568422 ZNF341Q9BYN7 854 aa20.95■□□□□ 0.94
CLN3-231ENST00000568422 EFCC1Q9HA90 598 aa20.95■□□□□ 0.94
CLN3-231ENST00000568422 PTPN22Q9Y2R2 807 aa20.95■□□□□ 0.94
CLN3-231ENST00000568422 DAGLAQ9Y4D2 1042 aa20.95■□□□□ 0.94
CLN3-231ENST00000568422 SNCAIPQ9Y6H5 919 aa20.95■□□□□ 0.94
CLN3-231ENST00000568422 GNAI3P08754 354 aa20.94■□□□□ 0.94
CLN3-231ENST00000568422 ZGPATQ8N5A5 531 aaKnown RBP20.94■□□□□ 0.94
CLN3-231ENST00000568422 ZKSCAN4Q969J2 545 aaPredicted RBP20.94■□□□□ 0.94
CLN3-231ENST00000568422 RBBP6Q7Z6E9 1792 aaKnown RBP20.94■□□□□ 0.94
CLN3-231ENST00000568422 PRDX5P30044 214 aa20.93■□□□□ 0.94
CLN3-231ENST00000568422 PPIL2Q13356 520 aa20.93■□□□□ 0.94
CLN3-231ENST00000568422 SNAPC2Q13487 334 aa20.93■□□□□ 0.94
CLN3-231ENST00000568422 CDC42EP5Q6NZY7 148 aa20.93■□□□□ 0.94
CLN3-231ENST00000568422 MEIS3Q99687 375 aa20.93■□□□□ 0.94
CLN3-231ENST00000568422 MYH2Q9UKX2 1941 aa20.93■□□□□ 0.94
CLN3-231ENST00000568422 PPATQ06203 517 aa20.92■□□□□ 0.94
CLN3-231ENST00000568422 DIXDC1Q155Q3 683 aa20.92■□□□□ 0.94
CLN3-231ENST00000568422 PA2G4Q9UQ80 394 aaKnown RBP20.92■□□□□ 0.94
CLN3-231ENST00000568422 PDS5AQ29RF7 1337 aaKnown RBP20.92■□□□□ 0.94
CLN3-231ENST00000568422 CENPFP49454 3210 aa20.92■□□□□ 0.94
CLN3-231ENST00000568422 IRF6O14896 467 aa20.91■□□□□ 0.94
CLN3-231ENST00000568422 IPO8O15397 1037 aaKnown RBP20.91■□□□□ 0.94
CLN3-231ENST00000568422 PHKA1P46020 1223 aa20.91■□□□□ 0.94
CLN3-231ENST00000568422 PRPF38BQ5VTL8 546 aaKnown RBP20.91■□□□□ 0.94
CLN3-231ENST00000568422 CCDC102BQ68D86 513 aa20.91■□□□□ 0.94
CLN3-231ENST00000568422 FAM43AQ8N2R8 423 aa20.91■□□□□ 0.94
CLN3-231ENST00000568422 ZNF112Q9UJU3 913 aa20.91■□□□□ 0.94
CLN3-231ENST00000568422 AKAP2Q9Y2D5 859 aa20.91■□□□□ 0.94
CLN3-231ENST00000568422 TLR2O60603 784 aa20.9■□□□□ 0.94
CLN3-231ENST00000568422 MTX1Q13505 466 aa20.9■□□□□ 0.94
CLN3-231ENST00000568422 MIGA2Q7L4E1 593 aa20.9■□□□□ 0.94
CLN3-231ENST00000568422 SLF2Q8IX21 1173 aa20.9■□□□□ 0.94
CLN3-231ENST00000568422 ARMC5Q96C12 935 aa20.9■□□□□ 0.94
CLN3-231ENST00000568422 USP40Q9NVE5 1235 aa20.9■□□□□ 0.94
CLN3-231ENST00000568422 SRGAP3O43295 1099 aa20.89■□□□□ 0.93
CLN3-231ENST00000568422 TCP10Q12799 353 aa20.89■□□□□ 0.93
CLN3-231ENST00000568422 DOCK2Q92608 1830 aa20.89■□□□□ 0.93
CLN3-231ENST00000568422 BTBD19C9JJ37 291 aa20.88■□□□□ 0.93
CLN3-231ENST00000568422 NFIAQ12857 509 aa20.88■□□□□ 0.93
CLN3-231ENST00000568422 SPTY2D1Q68D10 685 aaPredicted RBP20.88■□□□□ 0.93
CLN3-231ENST00000568422 FAM198AQ9UFP1 575 aa20.88■□□□□ 0.93
CLN3-231ENST00000568422 GAKO14976 1311 aa20.87■□□□□ 0.93
CLN3-231ENST00000568422 GNRH1P01148 92 aa20.87■□□□□ 0.93
CLN3-231ENST00000568422 INPP5BP32019 993 aa20.87■□□□□ 0.93
CLN3-231ENST00000568422 TIMM10P62072 90 aa20.87■□□□□ 0.93
CLN3-231ENST00000568422 MVPQ14764 893 aaKnown RBP20.87■□□□□ 0.93
CLN3-231ENST00000568422 KIF22Q14807 665 aa20.87■□□□□ 0.93
CLN3-231ENST00000568422 NOL9Q5SY16 702 aaKnown RBP20.87■□□□□ 0.93
CLN3-231ENST00000568422 NBPF11Q86T75 865 aa20.87■□□□□ 0.93
CLN3-231ENST00000568422 FAM163AQ96GL9 167 aaPredicted RBP20.87■□□□□ 0.93
CLN3-231ENST00000568422 IDI2Q9BXS1 227 aa20.87■□□□□ 0.93
CLN3-231ENST00000568422 A0A1B0GUL7 405 aa20.86■□□□□ 0.93
CLN3-231ENST00000568422 ENTPD3O75355 529 aa20.86■□□□□ 0.93
CLN3-231ENST00000568422 ADORA1P30542 326 aa20.86■□□□□ 0.93
CLN3-231ENST00000568422 CAP1Q01518 475 aa20.86■□□□□ 0.93
CLN3-231ENST00000568422 RASGRF1Q13972 1273 aa20.86■□□□□ 0.93
CLN3-231ENST00000568422 DZIP1Q86YF9 867 aaKnown RBP20.86■□□□□ 0.93
CLN3-231ENST00000568422 KCNH4Q9UQ05 1017 aa20.86■□□□□ 0.93
CLN3-231ENST00000568422 ATF7IPQ6VMQ6 1270 aa20.85■□□□□ 0.93
CLN3-231ENST00000568422 ANKRD23Q86SG2 305 aa20.85■□□□□ 0.93
CLN3-231ENST00000568422 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.85■□□□□ 0.93
CLN3-231ENST00000568422 XAGE2Q96GT9 111 aa20.85■□□□□ 0.93
CLN3-231ENST00000568422 ABCF2Q9UG63 623 aa20.85■□□□□ 0.93
CLN3-231ENST00000568422 GNAI2P04899 355 aa20.84■□□□□ 0.93
CLN3-231ENST00000568422 TRIM27P14373 513 aa20.84■□□□□ 0.93
CLN3-231ENST00000568422 LACTBP83111 547 aaPredicted RBP20.84■□□□□ 0.93
CLN3-231ENST00000568422 TFCP2Q12800 502 aa20.84■□□□□ 0.93
CLN3-231ENST00000568422 POTEFA5A3E0 1075 aa20.83■□□□□ 0.93
CLN3-231ENST00000568422 RGS3P49796 1198 aa20.83■□□□□ 0.93
CLN3-231ENST00000568422 PRMT2P55345 433 aa20.83■□□□□ 0.93
CLN3-231ENST00000568422 SLC9C1Q4G0N8 1177 aa20.83■□□□□ 0.93
CLN3-231ENST00000568422 TMEM106CQ9BVX2 250 aa20.83■□□□□ 0.93
CLN3-231ENST00000568422 KIAA0100Q14667 2235 aaKnown RBP20.82■□□□□ 0.92
CLN3-231ENST00000568422 CXCL11O14625 94 aa20.82■□□□□ 0.92
CLN3-231ENST00000568422 C17orf99Q6UX52 265 aa20.82■□□□□ 0.92
CLN3-231ENST00000568422 ERICH6Q7L0X2 663 aa20.82■□□□□ 0.92
CLN3-231ENST00000568422 ZFPM1Q8IX07 1006 aa20.82■□□□□ 0.92
CLN3-231ENST00000568422 ZNF333Q96JL9 665 aa20.82■□□□□ 0.92
CLN3-231ENST00000568422 NEUROD6Q96NK8 337 aa20.82■□□□□ 0.92
CLN3-231ENST00000568422 PTCH2Q9Y6C5 1203 aa20.82■□□□□ 0.92
CLN3-231ENST00000568422 RFX7Q2KHR2 1363 aa20.82■□□□□ 0.92
CLN3-231ENST00000568422 ATRNL1Q5VV63 1379 aa20.82■□□□□ 0.92
CLN3-231ENST00000568422 PHF20L1A8MW92 1017 aa20.81■□□□□ 0.92
CLN3-231ENST00000568422 PDHXO00330 501 aa20.81■□□□□ 0.92
CLN3-231ENST00000568422 MAP3K10Q02779 954 aa20.81■□□□□ 0.92
CLN3-231ENST00000568422 ZSCAN29Q8IWY8 852 aaPredicted RBP20.81■□□□□ 0.92
CLN3-231ENST00000568422 FRAT1Q92837 279 aaPredicted RBP20.81■□□□□ 0.92
CLN3-231ENST00000568422 BRCA2P51587 3418 aa20.81■□□□□ 0.92
CLN3-231ENST00000568422 MKI67P46013 3256 aaKnown RBP20.8■□□□□ 0.92
CLN3-231ENST00000568422 MROH7-TTC4A0A0A0MT08 1334 aa20.8■□□□□ 0.92
CLN3-231ENST00000568422 BCAR3O75815 825 aa20.8■□□□□ 0.92
CLN3-231ENST00000568422 MAP4K4O95819 1239 aaPredicted RBP20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms