RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 ERICH6Q7L0X2 663 aa22.99■■□□□ 1.27
CLN3-227ENST00000567495 ANKRD13AQ8IZ07 590 aa22.99■■□□□ 1.27
CLN3-227ENST00000567495 ZNF512BQ96KM6 892 aaPredicted RBP22.99■■□□□ 1.27
CLN3-227ENST00000567495 ECM29Q5VYK3 1845 aa22.98■■□□□ 1.27
CLN3-227ENST00000567495 ZBTB48P10074 688 aaPredicted RBP22.98■■□□□ 1.27
CLN3-227ENST00000567495 CACNB3P54284 484 aa22.98■■□□□ 1.27
CLN3-227ENST00000567495 SREBF2Q12772 1141 aa22.98■■□□□ 1.27
CLN3-227ENST00000567495 CDC42EP5Q6NZY7 148 aa22.98■■□□□ 1.27
CLN3-227ENST00000567495 RNF186Q9NXI6 227 aa22.98■■□□□ 1.27
CLN3-227ENST00000567495 GAKO14976 1311 aa22.98■■□□□ 1.27
CLN3-227ENST00000567495 IGSF3O75054 1194 aa22.97■■□□□ 1.27
CLN3-227ENST00000567495 TM4SF4P48230 202 aa22.97■■□□□ 1.27
CLN3-227ENST00000567495 INHBEP58166 350 aa22.97■■□□□ 1.27
CLN3-227ENST00000567495 GSTO1P78417 241 aa22.97■■□□□ 1.27
CLN3-227ENST00000567495 TTC39AQ5SRH9 613 aa22.97■■□□□ 1.27
CLN3-227ENST00000567495 FAM151AQ8WW52 585 aa22.97■■□□□ 1.27
CLN3-227ENST00000567495 USP40Q9NVE5 1235 aa22.97■■□□□ 1.27
CLN3-227ENST00000567495 RPAP1Q9BWH6 1393 aaPredicted RBP22.97■■□□□ 1.27
CLN3-227ENST00000567495 LDHCP07864 332 aa22.96■■□□□ 1.27
CLN3-227ENST00000567495 DBNDD2Q9BQY9 259 aa22.96■■□□□ 1.27
CLN3-227ENST00000567495 TSKSQ9UJT2 592 aa22.96■■□□□ 1.27
CLN3-227ENST00000567495 FZD1Q9UP38 647 aa22.96■■□□□ 1.27
CLN3-227ENST00000567495 TRPA1O75762 1119 aa22.95■■□□□ 1.26
CLN3-227ENST00000567495 MCAMP43121 646 aa22.95■■□□□ 1.26
CLN3-227ENST00000567495 MAP3K9P80192 1104 aa22.95■■□□□ 1.26
CLN3-227ENST00000567495 DCAF15Q66K64 600 aa22.95■■□□□ 1.26
CLN3-227ENST00000567495 CLMNQ96JQ2 1002 aa22.95■■□□□ 1.26
CLN3-227ENST00000567495 MANSC4A6NHS7 340 aaPredicted RBP22.94■■□□□ 1.26
CLN3-227ENST00000567495 MAP4K4O95819 1239 aaPredicted RBP22.94■■□□□ 1.26
CLN3-227ENST00000567495 MECOMQ03112 1051 aa22.94■■□□□ 1.26
CLN3-227ENST00000567495 CDAN1Q8IWY9 1227 aa22.94■■□□□ 1.26
CLN3-227ENST00000567495 WNK4Q96J92 1243 aa22.94■■□□□ 1.26
CLN3-227ENST00000567495 IDI2Q9BXS1 227 aa22.94■■□□□ 1.26
CLN3-227ENST00000567495 EXOC6BQ9Y2D4 811 aa22.94■■□□□ 1.26
CLN3-227ENST00000567495 MKRN3Q13064 507 aaKnown RBP22.93■■□□□ 1.26
CLN3-227ENST00000567495 PI16Q6UXB8 463 aa22.93■■□□□ 1.26
CLN3-227ENST00000567495 LRP2BPQ9P2M1 347 aa22.93■■□□□ 1.26
CLN3-227ENST00000567495 DBNLQ9UJU6 430 aaKnown RBP22.93■■□□□ 1.26
CLN3-227ENST00000567495 CSADQ9Y600 493 aa22.93■■□□□ 1.26
CLN3-227ENST00000567495 MROH7-TTC4A0A0A0MT08 1334 aa22.92■■□□□ 1.26
CLN3-227ENST00000567495 GPR75-ASB3A0A0A6YYF3 556 aa22.92■■□□□ 1.26
CLN3-227ENST00000567495 ENTPD3O75355 529 aa22.92■■□□□ 1.26
CLN3-227ENST00000567495 ALDH1A1P00352 501 aa22.92■■□□□ 1.26
CLN3-227ENST00000567495 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.92■■□□□ 1.26
CLN3-227ENST00000567495 EAF2Q96CJ1 260 aaPredicted RBP22.92■■□□□ 1.26
CLN3-227ENST00000567495 RAI14Q9P0K7 980 aa22.92■■□□□ 1.26
CLN3-227ENST00000567495 MYH13Q9UKX3 1938 aa22.91■■□□□ 1.26
CLN3-227ENST00000567495 RAB11FIP3O75154 756 aa22.91■■□□□ 1.26
CLN3-227ENST00000567495 TCP10Q12799 353 aa22.91■■□□□ 1.26
CLN3-227ENST00000567495 NFIAQ12857 509 aa22.91■■□□□ 1.26
CLN3-227ENST00000567495 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.91■■□□□ 1.26
CLN3-227ENST00000567495 TBC1D9Q6ZT07 1266 aa22.91■■□□□ 1.26
CLN3-227ENST00000567495 NSUN4Q96CB9 384 aaKnown RBP22.91■■□□□ 1.26
CLN3-227ENST00000567495 KIF1BPQ96EK5 621 aa22.91■■□□□ 1.26
CLN3-227ENST00000567495 NPM3O75607 178 aaKnown RBP22.9■■□□□ 1.26
CLN3-227ENST00000567495 BTDP43251 543 aa22.9■■□□□ 1.26
CLN3-227ENST00000567495 C20orf194Q5TEA3 1177 aa22.9■■□□□ 1.26
CLN3-227ENST00000567495 AACSQ86V21 672 aa22.9■■□□□ 1.26
CLN3-227ENST00000567495 SIRT2Q8IXJ6 389 aa22.9■■□□□ 1.26
CLN3-227ENST00000567495 RHPN1Q8TCX5 695 aa22.9■■□□□ 1.26
CLN3-227ENST00000567495 ZNF341Q9BYN7 854 aa22.9■■□□□ 1.26
CLN3-227ENST00000567495 CCDC8Q9H0W5 538 aaPredicted RBP22.9■■□□□ 1.26
CLN3-227ENST00000567495 FAM198AQ9UFP1 575 aa22.9■■□□□ 1.26
CLN3-227ENST00000567495 VGLL4Q14135 290 aa22.89■■□□□ 1.25
CLN3-227ENST00000567495 CLASRPQ8N2M8 674 aaKnown RBP22.89■■□□□ 1.25
CLN3-227ENST00000567495 WRNIP1Q96S55 665 aa22.89■■□□□ 1.25
CLN3-227ENST00000567495 SNRKQ9NRH2 765 aa22.89■■□□□ 1.25
CLN3-227ENST00000567495 RGS3P49796 1198 aa22.88■■□□□ 1.25
CLN3-227ENST00000567495 NOM1Q5C9Z4 860 aaKnown RBP22.88■■□□□ 1.25
CLN3-227ENST00000567495 OTUD7BQ6GQQ9 843 aa22.88■■□□□ 1.25
CLN3-227ENST00000567495 ZNF384Q8TF68 577 aa22.88■■□□□ 1.25
CLN3-227ENST00000567495 OPTNQ96CV9 577 aa22.88■■□□□ 1.25
CLN3-227ENST00000567495 NOL10Q9BSC4 688 aaKnown RBP22.88■■□□□ 1.25
CLN3-227ENST00000567495 CFHR5Q9BXR6 569 aa22.88■■□□□ 1.25
CLN3-227ENST00000567495 ELP3Q9H9T3 547 aa22.88■■□□□ 1.25
CLN3-227ENST00000567495 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.88■■□□□ 1.25
CLN3-227ENST00000567495 TMED8Q6PL24 325 aaPredicted RBP22.87■■□□□ 1.25
CLN3-227ENST00000567495 TLR7Q9NYK1 1049 aaKnown RBP22.87■■□□□ 1.25
CLN3-227ENST00000567495 WDHD1O75717 1129 aaPredicted RBP22.86■■□□□ 1.25
CLN3-227ENST00000567495 BAG3O95817 575 aa22.86■■□□□ 1.25
CLN3-227ENST00000567495 CYP2E1P05181 493 aaPredicted RBP22.86■■□□□ 1.25
CLN3-227ENST00000567495 PLCG2P16885 1265 aa22.86■■□□□ 1.25
CLN3-227ENST00000567495 RHBDL3P58872 404 aa22.86■■□□□ 1.25
CLN3-227ENST00000567495 NAA16Q6N069 864 aaPredicted RBP22.86■■□□□ 1.25
CLN3-227ENST00000567495 MIGA2Q7L4E1 593 aa22.86■■□□□ 1.25
CLN3-227ENST00000567495 ERO1BQ86YB8 467 aa22.86■■□□□ 1.25
CLN3-227ENST00000567495 IFNL1Q8IU54 200 aa22.86■■□□□ 1.25
CLN3-227ENST00000567495 ZNF112Q9UJU3 913 aa22.86■■□□□ 1.25
CLN3-227ENST00000567495 TESPA1A2RU30 521 aaPredicted RBP22.85■■□□□ 1.25
CLN3-227ENST00000567495 SPDYE5A6NIY4 337 aa22.85■■□□□ 1.25
CLN3-227ENST00000567495 GJA5P36382 358 aa22.85■■□□□ 1.25
CLN3-227ENST00000567495 ZAP70P43403 619 aa22.85■■□□□ 1.25
CLN3-227ENST00000567495 GTF2A2P52657 109 aa22.85■■□□□ 1.25
CLN3-227ENST00000567495 ZSCAN29Q8IWY8 852 aaPredicted RBP22.85■■□□□ 1.25
CLN3-227ENST00000567495 IL1RAPL2Q9NP60 686 aa22.85■■□□□ 1.25
CLN3-227ENST00000567495 RFX7Q2KHR2 1363 aa22.85■■□□□ 1.25
CLN3-227ENST00000567495 IFIT2P09913 472 aaKnown RBP22.84■■□□□ 1.25
CLN3-227ENST00000567495 ZFPM1Q8IX07 1006 aa22.84■■□□□ 1.25
CLN3-227ENST00000567495 SNCAIPQ9Y6H5 919 aa22.84■■□□□ 1.25
CLN3-227ENST00000567495 PPP4CP60510 307 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms