RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 USP40Q9NVE5 1235 aa25.58■■□□□ 1.69
CLN3-219ENST00000565778 PANK1Q8TE04 598 aa25.57■■□□□ 1.68
CLN3-219ENST00000565778 MS4A1P11836 297 aa25.56■■□□□ 1.68
CLN3-219ENST00000565778 DZIP1Q86YF9 867 aaKnown RBP25.56■■□□□ 1.68
CLN3-219ENST00000565778 FAM151AQ8WW52 585 aa25.56■■□□□ 1.68
CLN3-219ENST00000565778 CSADQ9Y600 493 aa25.56■■□□□ 1.68
CLN3-219ENST00000565778 CCDC85CA6NKD9 419 aa25.55■■□□□ 1.68
CLN3-219ENST00000565778 ALDH1A1P00352 501 aa25.55■■□□□ 1.68
CLN3-219ENST00000565778 TCP10Q12799 353 aa25.55■■□□□ 1.68
CLN3-219ENST00000565778 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.55■■□□□ 1.68
CLN3-219ENST00000565778 SLF2Q8IX21 1173 aa25.55■■□□□ 1.68
CLN3-219ENST00000565778 OPTNQ96CV9 577 aa25.55■■□□□ 1.68
CLN3-219ENST00000565778 PDS5AQ29RF7 1337 aaKnown RBP25.55■■□□□ 1.68
CLN3-219ENST00000565778 GJA5P36382 358 aa25.54■■□□□ 1.68
CLN3-219ENST00000565778 ERICH6Q7L0X2 663 aa25.54■■□□□ 1.68
CLN3-219ENST00000565778 IFNL1Q8IU54 200 aa25.54■■□□□ 1.68
CLN3-219ENST00000565778 HMG20BQ9P0W2 317 aa25.54■■□□□ 1.68
CLN3-219ENST00000565778 MYH13Q9UKX3 1938 aa25.54■■□□□ 1.68
CLN3-219ENST00000565778 DCAF15Q66K64 600 aa25.53■■□□□ 1.68
CLN3-219ENST00000565778 SPATA5Q8NB90 893 aa25.53■■□□□ 1.68
CLN3-219ENST00000565778 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.53■■□□□ 1.68
CLN3-219ENST00000565778 GPR25O00155 361 aa25.52■■□□□ 1.68
CLN3-219ENST00000565778 UQCRFS1P1P0C7P4 283 aa25.52■■□□□ 1.68
CLN3-219ENST00000565778 VGLL4Q14135 290 aa25.52■■□□□ 1.68
CLN3-219ENST00000565778 OTUD7BQ6GQQ9 843 aa25.52■■□□□ 1.68
CLN3-219ENST00000565778 MIGA2Q7L4E1 593 aa25.52■■□□□ 1.68
CLN3-219ENST00000565778 ZNF296Q8WUU4 475 aaPredicted RBP25.52■■□□□ 1.68
CLN3-219ENST00000565778 GPR108Q9NPR9 543 aa25.52■■□□□ 1.68
CLN3-219ENST00000565778 NFIAQ12857 509 aa25.51■■□□□ 1.67
CLN3-219ENST00000565778 TNNI3KQ59H18 835 aa25.51■■□□□ 1.67
CLN3-219ENST00000565778 FAM163AQ96GL9 167 aaPredicted RBP25.51■■□□□ 1.67
CLN3-219ENST00000565778 WRNIP1Q96S55 665 aa25.51■■□□□ 1.67
CLN3-219ENST00000565778 NOP58Q9Y2X3 529 aaKnown RBP25.51■■□□□ 1.67
CLN3-219ENST00000565778 FPGT-TNNI3KV9GXZ4 949 aa25.51■■□□□ 1.67
CLN3-219ENST00000565778 ARID4AP29374 1257 aaPredicted RBP25.5■■□□□ 1.67
CLN3-219ENST00000565778 CCDC158Q5M9N0 1113 aa25.5■■□□□ 1.67
CLN3-219ENST00000565778 PI16Q6UXB8 463 aa25.5■■□□□ 1.67
CLN3-219ENST00000565778 TBC1D9Q6ZT07 1266 aa25.5■■□□□ 1.67
CLN3-219ENST00000565778 CTU1Q7Z7A3 348 aaKnown RBP25.5■■□□□ 1.67
CLN3-219ENST00000565778 CNKSR2Q8WXI2 1034 aa25.5■■□□□ 1.67
CLN3-219ENST00000565778 ZKSCAN4Q969J2 545 aaPredicted RBP25.5■■□□□ 1.67
CLN3-219ENST00000565778 R3HDMLQ9H3Y0 253 aa25.5■■□□□ 1.67
CLN3-219ENST00000565778 FAM198AQ9UFP1 575 aa25.5■■□□□ 1.67
CLN3-219ENST00000565778 IGF2BP3O00425 579 aaKnown RBP eCLIP25.49■■□□□ 1.67
CLN3-219ENST00000565778 MECOMQ03112 1051 aa25.49■■□□□ 1.67
CLN3-219ENST00000565778 TTC39AQ5SRH9 613 aa25.49■■□□□ 1.67
CLN3-219ENST00000565778 CEP85Q6P2H3 762 aa25.49■■□□□ 1.67
CLN3-219ENST00000565778 CFHR5Q9BXR6 569 aa25.49■■□□□ 1.67
CLN3-219ENST00000565778 ZNF341Q9BYN7 854 aa25.49■■□□□ 1.67
CLN3-219ENST00000565778 RCAN3Q9UKA8 241 aa25.49■■□□□ 1.67
CLN3-219ENST00000565778 GAKO14976 1311 aa25.48■■□□□ 1.67
CLN3-219ENST00000565778 LDHCP07864 332 aa25.48■■□□□ 1.67
CLN3-219ENST00000565778 OTUD5Q96G74 571 aa25.48■■□□□ 1.67
CLN3-219ENST00000565778 DBNDD2Q9BQY9 259 aa25.48■■□□□ 1.67
CLN3-219ENST00000565778 RAI14Q9P0K7 980 aa25.48■■□□□ 1.67
CLN3-219ENST00000565778 TESPA1A2RU30 521 aaPredicted RBP25.47■■□□□ 1.67
CLN3-219ENST00000565778 FKTNO75072 461 aa25.47■■□□□ 1.67
CLN3-219ENST00000565778 MCAMP43121 646 aa25.47■■□□□ 1.67
CLN3-219ENST00000565778 BTDP43251 543 aa25.47■■□□□ 1.67
CLN3-219ENST00000565778 GSTO1P78417 241 aa25.47■■□□□ 1.67
CLN3-219ENST00000565778 NOM1Q5C9Z4 860 aaKnown RBP25.47■■□□□ 1.67
CLN3-219ENST00000565778 ZFPM1Q8IX07 1006 aa25.47■■□□□ 1.67
CLN3-219ENST00000565778 PTPN18Q99952 460 aa25.47■■□□□ 1.67
CLN3-219ENST00000565778 SNRKQ9NRH2 765 aa25.47■■□□□ 1.67
CLN3-219ENST00000565778 LRP2BPQ9P2M1 347 aa25.47■■□□□ 1.67
CLN3-219ENST00000565778 RPAP1Q9BWH6 1393 aaPredicted RBP25.46■■□□□ 1.67
CLN3-219ENST00000565778 RGS3P49796 1198 aa25.46■■□□□ 1.67
CLN3-219ENST00000565778 GTF2A2P52657 109 aa25.46■■□□□ 1.67
CLN3-219ENST00000565778 ERO1BQ86YB8 467 aa25.46■■□□□ 1.67
CLN3-219ENST00000565778 ZSCAN29Q8IWY8 852 aaPredicted RBP25.46■■□□□ 1.67
CLN3-219ENST00000565778 MS4A4AQ96JQ5 239 aa25.46■■□□□ 1.67
CLN3-219ENST00000565778 IDI2Q9BXS1 227 aa25.46■■□□□ 1.67
CLN3-219ENST00000565778 COG6Q9Y2V7 657 aa25.46■■□□□ 1.67
CLN3-219ENST00000565778 SNCAIPQ9Y6H5 919 aa25.46■■□□□ 1.67
CLN3-219ENST00000565778 MROH7-TTC4A0A0A0MT08 1334 aa25.45■■□□□ 1.66
CLN3-219ENST00000565778 SPDYE5A6NIY4 337 aa25.45■■□□□ 1.66
CLN3-219ENST00000565778 ENTPD3O75355 529 aa25.45■■□□□ 1.66
CLN3-219ENST00000565778 CCDC8Q9H0W5 538 aaPredicted RBP25.45■■□□□ 1.66
CLN3-219ENST00000565778 GPR75-ASB3A0A0A6YYF3 556 aa25.44■■□□□ 1.66
CLN3-219ENST00000565778 INPP5BP32019 993 aa25.44■■□□□ 1.66
CLN3-219ENST00000565778 PICALMQ13492 652 aa25.44■■□□□ 1.66
CLN3-219ENST00000565778 NSUN4Q96CB9 384 aaKnown RBP25.44■■□□□ 1.66
CLN3-219ENST00000565778 DDX19BQ9UMR2 479 aa25.44■■□□□ 1.66
CLN3-219ENST00000565778 CCL15-CCL14A0A0B4J2E2 113 aa25.43■■□□□ 1.66
CLN3-219ENST00000565778 PKN2Q16513 984 aaKnown RBP25.43■■□□□ 1.66
CLN3-219ENST00000565778 CCL15Q16663 113 aa25.43■■□□□ 1.66
CLN3-219ENST00000565778 ZNF384Q8TF68 577 aa25.43■■□□□ 1.66
CLN3-219ENST00000565778 EXOC6BQ9Y2D4 811 aa25.43■■□□□ 1.66
CLN3-219ENST00000565778 ERC1Q8IUD2 1116 aa25.42■■□□□ 1.66
CLN3-219ENST00000565778 BRI3BPQ8WY22 251 aa25.42■■□□□ 1.66
CLN3-219ENST00000565778 EAF2Q96CJ1 260 aaPredicted RBP25.42■■□□□ 1.66
CLN3-219ENST00000565778 ZNF112Q9UJU3 913 aa25.42■■□□□ 1.66
CLN3-219ENST00000565778 WDHD1O75717 1129 aaPredicted RBP25.41■■□□□ 1.66
CLN3-219ENST00000565778 CRHR2Q13324 411 aa25.41■■□□□ 1.66
CLN3-219ENST00000565778 RPAP2Q8IXW5 612 aaPredicted RBP25.41■■□□□ 1.66
CLN3-219ENST00000565778 CHMP4BQ9H444 224 aaKnown RBP25.41■■□□□ 1.66
CLN3-219ENST00000565778 MYH2Q9UKX2 1941 aa25.41■■□□□ 1.66
CLN3-219ENST00000565778 IRF6O14896 467 aa25.4■■□□□ 1.66
CLN3-219ENST00000565778 CETPP11597 493 aa25.4■■□□□ 1.66
CLN3-219ENST00000565778 PPATQ06203 517 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms