RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 FAM151AQ8WW52 585 aa23.25■■□□□ 1.31
CLN3-218ENST00000565688 BRI3BPQ8WY22 251 aa23.25■■□□□ 1.31
CLN3-218ENST00000565688 PRDX5P30044 214 aa23.24■■□□□ 1.31
CLN3-218ENST00000565688 PHKA1P46020 1223 aa23.24■■□□□ 1.31
CLN3-218ENST00000565688 SNCAIPQ9Y6H5 919 aa23.24■■□□□ 1.31
CLN3-218ENST00000565688 SRGAP3O43295 1099 aa23.23■■□□□ 1.31
CLN3-218ENST00000565688 WDHD1O75717 1129 aaPredicted RBP23.23■■□□□ 1.31
CLN3-218ENST00000565688 SP3Q02447 781 aa23.23■■□□□ 1.31
CLN3-218ENST00000565688 MTX1Q13505 466 aa23.23■■□□□ 1.31
CLN3-218ENST00000565688 DIXDC1Q155Q3 683 aa23.23■■□□□ 1.31
CLN3-218ENST00000565688 CDC42EP5Q6NZY7 148 aa23.23■■□□□ 1.31
CLN3-218ENST00000565688 ZNF341Q9BYN7 854 aa23.23■■□□□ 1.31
CLN3-218ENST00000565688 AKAP2Q9Y2D5 859 aa23.23■■□□□ 1.31
CLN3-218ENST00000565688 PDE4DIPQ5VU43 2346 aa23.22■■□□□ 1.31
CLN3-218ENST00000565688 HTTP42858 3142 aa23.22■■□□□ 1.31
CLN3-218ENST00000565688 CETPP11597 493 aa23.22■■□□□ 1.31
CLN3-218ENST00000565688 CCDC102BQ68D86 513 aa23.22■■□□□ 1.31
CLN3-218ENST00000565688 CD99L2Q8TCZ2 262 aa23.22■■□□□ 1.31
CLN3-218ENST00000565688 ZKSCAN4Q969J2 545 aaPredicted RBP23.22■■□□□ 1.31
CLN3-218ENST00000565688 ZFYVE28Q9HCC9 887 aa23.22■■□□□ 1.31
CLN3-218ENST00000565688 SNAPC2Q13487 334 aa23.21■■□□□ 1.31
CLN3-218ENST00000565688 ARHGEF6Q15052 776 aa23.21■■□□□ 1.31
CLN3-218ENST00000565688 TAF1CQ15572 869 aaPredicted RBP23.21■■□□□ 1.31
CLN3-218ENST00000565688 EFCC1Q9HA90 598 aa23.21■■□□□ 1.31
CLN3-218ENST00000565688 ZCCHC17Q9NP64 241 aaKnown RBP23.21■■□□□ 1.31
CLN3-218ENST00000565688 PDS5AQ29RF7 1337 aaKnown RBP23.21■■□□□ 1.31
CLN3-218ENST00000565688 TRIM27P14373 513 aa23.2■■□□□ 1.3
CLN3-218ENST00000565688 ADORA1P30542 326 aa23.2■■□□□ 1.3
CLN3-218ENST00000565688 PPIL2Q13356 520 aa23.2■■□□□ 1.3
CLN3-218ENST00000565688 ATF7IPQ6VMQ6 1270 aa23.2■■□□□ 1.3
CLN3-218ENST00000565688 MIGA2Q7L4E1 593 aa23.2■■□□□ 1.3
CLN3-218ENST00000565688 USP40Q9NVE5 1235 aa23.2■■□□□ 1.3
CLN3-218ENST00000565688 TIMM10P62072 90 aa23.19■■□□□ 1.3
CLN3-218ENST00000565688 TCP10Q12799 353 aa23.19■■□□□ 1.3
CLN3-218ENST00000565688 MVPQ14764 893 aaKnown RBP23.19■■□□□ 1.3
CLN3-218ENST00000565688 SLF2Q8IX21 1173 aa23.19■■□□□ 1.3
CLN3-218ENST00000565688 FAM43AQ8N2R8 423 aa23.19■■□□□ 1.3
CLN3-218ENST00000565688 PTPN22Q9Y2R2 807 aa23.19■■□□□ 1.3
CLN3-218ENST00000565688 A0A1B0GUL7 405 aa23.18■■□□□ 1.3
CLN3-218ENST00000565688 IRF6O14896 467 aa23.18■■□□□ 1.3
CLN3-218ENST00000565688 GNAI2P04899 355 aa23.18■■□□□ 1.3
CLN3-218ENST00000565688 PPATQ06203 517 aa23.18■■□□□ 1.3
CLN3-218ENST00000565688 NFIAQ12857 509 aa23.18■■□□□ 1.3
CLN3-218ENST00000565688 RASGRF1Q13972 1273 aa23.18■■□□□ 1.3
CLN3-218ENST00000565688 SPTY2D1Q68D10 685 aaPredicted RBP23.18■■□□□ 1.3
CLN3-218ENST00000565688 FRAT1Q92837 279 aaPredicted RBP23.18■■□□□ 1.3
CLN3-218ENST00000565688 FAM198AQ9UFP1 575 aa23.18■■□□□ 1.3
CLN3-218ENST00000565688 ZNF112Q9UJU3 913 aa23.18■■□□□ 1.3
CLN3-218ENST00000565688 TFCP2Q12800 502 aa23.17■■□□□ 1.3
CLN3-218ENST00000565688 DZIP1Q86YF9 867 aaKnown RBP23.17■■□□□ 1.3
CLN3-218ENST00000565688 XAGE2Q96GT9 111 aa23.17■■□□□ 1.3
CLN3-218ENST00000565688 GAKO14976 1311 aa23.16■■□□□ 1.3
CLN3-218ENST00000565688 INPP5BP32019 993 aa23.16■■□□□ 1.3
CLN3-218ENST00000565688 BTBD19C9JJ37 291 aa23.15■■□□□ 1.3
CLN3-218ENST00000565688 ENTPD3O75355 529 aa23.15■■□□□ 1.3
CLN3-218ENST00000565688 BCAR3O75815 825 aa23.15■■□□□ 1.3
CLN3-218ENST00000565688 FAM163AQ96GL9 167 aaPredicted RBP23.15■■□□□ 1.3
CLN3-218ENST00000565688 IDI2Q9BXS1 227 aa23.15■■□□□ 1.3
CLN3-218ENST00000565688 ABCF2Q9UG63 623 aa23.15■■□□□ 1.3
CLN3-218ENST00000565688 TLR2O60603 784 aa23.14■■□□□ 1.29
CLN3-218ENST00000565688 NOL9Q5SY16 702 aaKnown RBP23.14■■□□□ 1.29
CLN3-218ENST00000565688 GORABQ5T7V8 394 aa23.13■■□□□ 1.29
CLN3-218ENST00000565688 CLUAP1Q96AJ1 413 aa23.13■■□□□ 1.29
CLN3-218ENST00000565688 ARMC5Q96C12 935 aa23.13■■□□□ 1.29
CLN3-218ENST00000565688 NEUROD6Q96NK8 337 aa23.13■■□□□ 1.29
CLN3-218ENST00000565688 KCNH4Q9UQ05 1017 aa23.13■■□□□ 1.29
CLN3-218ENST00000565688 AK9Q5TCS8 1911 aa23.12■■□□□ 1.29
CLN3-218ENST00000565688 MYH2Q9UKX2 1941 aa23.12■■□□□ 1.29
CLN3-218ENST00000565688 RGS3P49796 1198 aa23.12■■□□□ 1.29
CLN3-218ENST00000565688 G3BP1Q13283 466 aaKnown RBP eCLIP23.12■■□□□ 1.29
CLN3-218ENST00000565688 KIF22Q14807 665 aa23.12■■□□□ 1.29
CLN3-218ENST00000565688 ZKSCAN2Q63HK3 967 aa23.12■■□□□ 1.29
CLN3-218ENST00000565688 ERICH6Q7L0X2 663 aa23.12■■□□□ 1.29
CLN3-218ENST00000565688 ZFPM1Q8IX07 1006 aa23.12■■□□□ 1.29
CLN3-218ENST00000565688 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.12■■□□□ 1.29
CLN3-218ENST00000565688 CENPFP49454 3210 aa23.11■■□□□ 1.29
CLN3-218ENST00000565688 ANKRD23Q86SG2 305 aa23.11■■□□□ 1.29
CLN3-218ENST00000565688 TNNQ9UQP3 1299 aa23.11■■□□□ 1.29
CLN3-218ENST00000565688 MROH7-TTC4A0A0A0MT08 1334 aa23.1■■□□□ 1.29
CLN3-218ENST00000565688 CAP1Q01518 475 aa23.1■■□□□ 1.29
CLN3-218ENST00000565688 PRPF38BQ5VTL8 546 aaKnown RBP23.1■■□□□ 1.29
CLN3-218ENST00000565688 ZSCAN29Q8IWY8 852 aaPredicted RBP23.1■■□□□ 1.29
CLN3-218ENST00000565688 RFX7Q2KHR2 1363 aa23.1■■□□□ 1.29
CLN3-218ENST00000565688 PNMA6EA0A0J9YXQ4 647 aa23.09■■□□□ 1.29
CLN3-218ENST00000565688 GNRH1P01148 92 aa23.09■■□□□ 1.29
CLN3-218ENST00000565688 BTDP43251 543 aa23.09■■□□□ 1.29
CLN3-218ENST00000565688 GSTO1P78417 241 aa23.09■■□□□ 1.29
CLN3-218ENST00000565688 LACTBP83111 547 aaPredicted RBP23.09■■□□□ 1.29
CLN3-218ENST00000565688 MECOMQ03112 1051 aa23.09■■□□□ 1.29
CLN3-218ENST00000565688 NBPF11Q86T75 865 aa23.09■■□□□ 1.29
CLN3-218ENST00000565688 TMEM57Q8N5G2 664 aa23.09■■□□□ 1.29
CLN3-218ENST00000565688 SPATA5Q8NB90 893 aa23.09■■□□□ 1.29
CLN3-218ENST00000565688 HMG20BQ9P0W2 317 aa23.09■■□□□ 1.29
CLN3-218ENST00000565688 ATRNL1Q5VV63 1379 aa23.09■■□□□ 1.29
CLN3-218ENST00000565688 GPR75-ASB3A0A0A6YYF3 556 aa23.08■■□□□ 1.29
CLN3-218ENST00000565688 CXCL11O14625 94 aa23.08■■□□□ 1.29
CLN3-218ENST00000565688 SLC34A2O95436 690 aa23.08■■□□□ 1.29
CLN3-218ENST00000565688 MAP4K4O95819 1239 aaPredicted RBP23.08■■□□□ 1.29
CLN3-218ENST00000565688 ARID4AP29374 1257 aaPredicted RBP23.08■■□□□ 1.29
CLN3-218ENST00000565688 MAP3K10Q02779 954 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms