RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 AACSQ86V21 672 aa21.14■□□□□ 0.97
CLN3-217ENST00000565354 CLMNQ96JQ2 1002 aa21.14■□□□□ 0.97
CLN3-217ENST00000565354 SSC5DA1L4H1 1573 aa21.14■□□□□ 0.97
CLN3-217ENST00000565354 MYH13Q9UKX3 1938 aa21.14■□□□□ 0.97
CLN3-217ENST00000565354 PPP1R12BO60237 982 aaPredicted RBP21.13■□□□□ 0.97
CLN3-217ENST00000565354 DLGAP5Q15398 846 aa21.13■□□□□ 0.97
CLN3-217ENST00000565354 CCDC158Q5M9N0 1113 aa21.13■□□□□ 0.97
CLN3-217ENST00000565354 MFSD14BQ5SR56 506 aa21.13■□□□□ 0.97
CLN3-217ENST00000565354 TTC39AQ5SRH9 613 aa21.13■□□□□ 0.97
CLN3-217ENST00000565354 MTMR14Q8NCE2 650 aa21.13■□□□□ 0.97
CLN3-217ENST00000565354 TBC1D22AQ8WUA7 517 aa21.13■□□□□ 0.97
CLN3-217ENST00000565354 ERO1AQ96HE7 468 aa21.13■□□□□ 0.97
CLN3-217ENST00000565354 LRRCC1Q9C099 1032 aa21.13■□□□□ 0.97
CLN3-217ENST00000565354 CCDC8Q9H0W5 538 aaPredicted RBP21.13■□□□□ 0.97
CLN3-217ENST00000565354 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.13■□□□□ 0.97
CLN3-217ENST00000565354 ZBTB47Q9UFB7 747 aaPredicted RBP21.13■□□□□ 0.97
CLN3-217ENST00000565354 DENND2AQ9ULE3 1009 aa21.13■□□□□ 0.97
CLN3-217ENST00000565354 PTPN22Q9Y2R2 807 aa21.13■□□□□ 0.97
CLN3-217ENST00000565354 PPP2R3BQ9Y5P8 575 aa21.13■□□□□ 0.97
CLN3-217ENST00000565354 CEP290O15078 2479 aa21.12■□□□□ 0.97
CLN3-217ENST00000565354 UNCXA6NJT0 531 aa21.12■□□□□ 0.97
CLN3-217ENST00000565354 F8W031 263 aaPredicted RBP21.12■□□□□ 0.97
CLN3-217ENST00000565354 SEMA3EO15041 775 aa21.12■□□□□ 0.97
CLN3-217ENST00000565354 IFIT2P09913 472 aaKnown RBP21.12■□□□□ 0.97
CLN3-217ENST00000565354 FKBP1AP62942 108 aaKnown RBP21.12■□□□□ 0.97
CLN3-217ENST00000565354 DBNDD2Q9BQY9 259 aa21.12■□□□□ 0.97
CLN3-217ENST00000565354 UQCRFS1P1P0C7P4 283 aa21.11■□□□□ 0.97
CLN3-217ENST00000565354 WDR66Q8TBY9 1149 aa21.11■□□□□ 0.97
CLN3-217ENST00000565354 CD99L2Q8TCZ2 262 aa21.11■□□□□ 0.97
CLN3-217ENST00000565354 EAF2Q96CJ1 260 aaPredicted RBP21.11■□□□□ 0.97
CLN3-217ENST00000565354 DCTPP1Q9H773 170 aa21.11■□□□□ 0.97
CLN3-217ENST00000565354 SUPT20HL1Q3ZLR7 823 aa21.1■□□□□ 0.97
CLN3-217ENST00000565354 OTUD7BQ6GQQ9 843 aa21.1■□□□□ 0.97
CLN3-217ENST00000565354 CERS5Q8N5B7 392 aa21.1■□□□□ 0.97
CLN3-217ENST00000565354 ARMC5Q96C12 935 aa21.1■□□□□ 0.97
CLN3-217ENST00000565354 RWDD1Q9H446 243 aaPredicted RBP21.1■□□□□ 0.97
CLN3-217ENST00000565354 CRHR2Q13324 411 aa21.09■□□□□ 0.97
CLN3-217ENST00000565354 EFCC1Q9HA90 598 aa21.09■□□□□ 0.97
CLN3-217ENST00000565354 MYO1BO43795 1136 aa21.08■□□□□ 0.97
CLN3-217ENST00000565354 NEFLP07196 543 aa21.08■□□□□ 0.97
CLN3-217ENST00000565354 GJA5P36382 358 aa21.08■□□□□ 0.97
CLN3-217ENST00000565354 HDAC1Q13547 482 aaPredicted RBP21.08■□□□□ 0.97
CLN3-217ENST00000565354 TLR7Q9NYK1 1049 aaKnown RBP21.08■□□□□ 0.97
CLN3-217ENST00000565354 DBNLQ9UJU6 430 aaKnown RBP21.08■□□□□ 0.97
CLN3-217ENST00000565354 PCDHAC2Q9Y5I4 1007 aa21.08■□□□□ 0.97
CLN3-217ENST00000565354 OTOFQ9HC10 1997 aa21.08■□□□□ 0.96
CLN3-217ENST00000565354 CLRN2A0PK11 232 aa21.07■□□□□ 0.96
CLN3-217ENST00000565354 SPDYE2BA6NHP3 402 aa21.07■□□□□ 0.96
CLN3-217ENST00000565354 SMARCA5O60264 1052 aaPredicted RBP21.07■□□□□ 0.96
CLN3-217ENST00000565354 SPDYE6P0CI01 402 aa21.07■□□□□ 0.96
CLN3-217ENST00000565354 EN2P19622 333 aaPredicted RBP21.07■□□□□ 0.96
CLN3-217ENST00000565354 IREB2P48200 963 aaKnown RBP21.07■□□□□ 0.96
CLN3-217ENST00000565354 SP3Q02447 781 aa21.07■□□□□ 0.96
CLN3-217ENST00000565354 RASGRF1Q13972 1273 aa21.07■□□□□ 0.96
CLN3-217ENST00000565354 NBPF12Q5TAG4 269 aaPredicted RBP21.07■□□□□ 0.96
CLN3-217ENST00000565354 ZGPATQ8N5A5 531 aaKnown RBP21.07■□□□□ 0.96
CLN3-217ENST00000565354 TTF2Q9UNY4 1162 aaKnown RBP21.07■□□□□ 0.96
CLN3-217ENST00000565354 ARID4AP29374 1257 aaPredicted RBP21.06■□□□□ 0.96
CLN3-217ENST00000565354 RBM5P52756 815 aaKnown RBP eCLIP21.06■□□□□ 0.96
CLN3-217ENST00000565354 CFAP100Q494V2 611 aa21.06■□□□□ 0.96
CLN3-217ENST00000565354 PRMT6Q96LA8 375 aaPredicted RBP21.06■□□□□ 0.96
CLN3-217ENST00000565354 PTPN18Q99952 460 aa21.06■□□□□ 0.96
CLN3-217ENST00000565354 MAST3O60307 1309 aa21.05■□□□□ 0.96
CLN3-217ENST00000565354 TESPA1A2RU30 521 aaPredicted RBP21.05■□□□□ 0.96
CLN3-217ENST00000565354 USP2O75604 605 aaPredicted RBP21.05■□□□□ 0.96
CLN3-217ENST00000565354 ANKRD13AQ8IZ07 590 aa21.05■□□□□ 0.96
CLN3-217ENST00000565354 SPATA5Q8NB90 893 aa21.05■□□□□ 0.96
CLN3-217ENST00000565354 VEZTQ9HBM0 779 aa21.05■□□□□ 0.96
CLN3-217ENST00000565354 ABCF2Q9UG63 623 aa21.05■□□□□ 0.96
CLN3-217ENST00000565354 SUGT1Q9Y2Z0 365 aa21.05■□□□□ 0.96
CLN3-217ENST00000565354 PDS5AQ29RF7 1337 aaKnown RBP21.04■□□□□ 0.96
CLN3-217ENST00000565354 LDHBP07195 334 aaKnown RBP21.04■□□□□ 0.96
CLN3-217ENST00000565354 FXR1P51114 621 aaKnown RBP eCLIP21.04■□□□□ 0.96
CLN3-217ENST00000565354 CAP1Q01518 475 aa21.04■□□□□ 0.96
CLN3-217ENST00000565354 HMG20BQ9P0W2 317 aa21.04■□□□□ 0.96
CLN3-217ENST00000565354 TRIOBPQ9H2D6 2365 aa21.04■□□□□ 0.96
CLN3-217ENST00000565354 ZBTB22O15209 634 aa21.03■□□□□ 0.96
CLN3-217ENST00000565354 MCAMP43121 646 aa21.03■□□□□ 0.96
CLN3-217ENST00000565354 RASA3Q14644 834 aa21.03■□□□□ 0.96
CLN3-217ENST00000565354 SPTY2D1Q68D10 685 aaPredicted RBP21.03■□□□□ 0.96
CLN3-217ENST00000565354 TMEM106CQ9BVX2 250 aa21.03■□□□□ 0.96
CLN3-217ENST00000565354 SNRKQ9NRH2 765 aa21.03■□□□□ 0.96
CLN3-217ENST00000565354 AOX1Q06278 1338 aa21.03■□□□□ 0.96
CLN3-217ENST00000565354 SALL1Q9NSC2 1324 aa21.03■□□□□ 0.96
CLN3-217ENST00000565354 ANKRD45Q5TZF3 282 aa21.02■□□□□ 0.96
CLN3-217ENST00000565354 PI16Q6UXB8 463 aa21.02■□□□□ 0.96
CLN3-217ENST00000565354 GPATCH3Q96I76 525 aa21.02■□□□□ 0.96
CLN3-217ENST00000565354 ZNF333Q96JL9 665 aa21.02■□□□□ 0.96
CLN3-217ENST00000565354 ZNF512BQ96KM6 892 aaPredicted RBP21.02■□□□□ 0.96
CLN3-217ENST00000565354 GRIK5Q16478 980 aa21.01■□□□□ 0.95
CLN3-217ENST00000565354 ERICH6Q7L0X2 663 aa21.01■□□□□ 0.95
CLN3-217ENST00000565354 DZIP1Q86YF9 867 aaKnown RBP21.01■□□□□ 0.95
CLN3-217ENST00000565354 TEKT1Q969V4 418 aa21.01■□□□□ 0.95
CLN3-217ENST00000565354 OPTNQ96CV9 577 aa21.01■□□□□ 0.95
CLN3-217ENST00000565354 SERPINA10Q9UK55 444 aa21.01■□□□□ 0.95
CLN3-217ENST00000565354 PRDX5P30044 214 aa21■□□□□ 0.95
CLN3-217ENST00000565354 CRKP46108 304 aa21■□□□□ 0.95
CLN3-217ENST00000565354 MS4A4AQ96JQ5 239 aa21■□□□□ 0.95
CLN3-217ENST00000565354 ELP3Q9H9T3 547 aa21■□□□□ 0.95
CLN3-217ENST00000565354 IGHDP01880 384 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms