RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ADM5C9JUS6 153 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 KLRK1P26718 216 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 CTCFP49711 727 aaPredicted RBP10.66□□□□□ -0.7
VPS39-207ENST00000563692 GTF2IP78347 998 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 PTH1RQ03431 593 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 KRT32Q14532 448 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 NECTIN1Q15223 517 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 ZMYM1Q5SVZ6 1142 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 ANGEL2Q5VTE6 544 aaKnown RBP10.66□□□□□ -0.7
VPS39-207ENST00000563692 CYP4F22Q6NT55 531 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 C15orf52Q6ZUT6 534 aaKnown RBP10.66□□□□□ -0.7
VPS39-207ENST00000563692 TXNRD3Q86VQ6 643 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 KCNB2Q92953 911 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 HHIPL1Q96JK4 782 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 GMLQ99445 158 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 ANP32EQ9BTT0 268 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 TM6SF1Q9BZW5 370 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 IL25Q9H293 177 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 CHMP5Q9NZZ3 219 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 RBM8AQ9Y5S9 174 aaKnown RBP10.66□□□□□ -0.7
VPS39-207ENST00000563692 SNX14Q9Y5W7 946 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 NDUFB9Q9Y6M9 179 aa10.66□□□□□ -0.7
VPS39-207ENST00000563692 PITPNM2Q9BZ72 1349 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 AK9Q5TCS8 1911 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 MCAMP43121 646 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 PHKA1P46020 1223 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 HUNKP57058 714 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 MAP3K12Q12852 859 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 CREB3L3Q68CJ9 461 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 VPS37DQ86XT2 251 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 KIAA0825Q8IV33 1275 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 SPATA5Q8NB90 893 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 SPRYD3Q8NCJ5 442 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 MXD3Q9BW11 206 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 SLKQ9H2G2 1235 aaPredicted RBP10.65□□□□□ -0.7
VPS39-207ENST00000563692 ANTXR1Q9H6X2 564 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 GBA2Q9HCG7 927 aaPredicted RBP10.65□□□□□ -0.7
VPS39-207ENST00000563692 CWC22Q9HCG8 908 aaKnown RBP10.65□□□□□ -0.7
VPS39-207ENST00000563692 CTNNA3Q9UI47 895 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 PALD1Q9ULE6 856 aa10.65□□□□□ -0.7
VPS39-207ENST00000563692 SNAP23O00161 211 aa10.64□□□□□ -0.71
VPS39-207ENST00000563692 NF2P35240 595 aa10.64□□□□□ -0.71
VPS39-207ENST00000563692 MAP2K2P36507 400 aa10.64□□□□□ -0.71
VPS39-207ENST00000563692 UBE3CQ15386 1083 aa10.64□□□□□ -0.71
VPS39-207ENST00000563692 TSGA10IPQ3SY00 556 aa10.64□□□□□ -0.71
VPS39-207ENST00000563692 COL13A1Q5TAT6 717 aaPredicted RBP10.64□□□□□ -0.71
VPS39-207ENST00000563692 TNS4Q8IZW8 715 aa10.64□□□□□ -0.71
VPS39-207ENST00000563692 APPBP2Q92624 585 aa10.64□□□□□ -0.71
VPS39-207ENST00000563692 DSCC1Q9BVC3 393 aa10.64□□□□□ -0.71
VPS39-207ENST00000563692 WBP1LQ9NX94 342 aa10.64□□□□□ -0.71
VPS39-207ENST00000563692 CIZ1Q9ULV3 898 aaPredicted RBP10.64□□□□□ -0.71
VPS39-207ENST00000563692 CYP46A1Q9Y6A2 500 aa10.64□□□□□ -0.71
VPS39-207ENST00000563692 SPEF2Q9C093 1822 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 SCN9AQ15858 1988 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 SLC27A2O14975 620 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 SEMA3EO15041 775 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 FOXN1O15353 648 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 MYO1BO43795 1136 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 FRAT2O75474 233 aaPredicted RBP10.63□□□□□ -0.71
VPS39-207ENST00000563692 CYP2E1P05181 493 aaPredicted RBP10.63□□□□□ -0.71
VPS39-207ENST00000563692 IL1R1P14778 569 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 HIBADHP31937 336 aaKnown RBP10.63□□□□□ -0.71
VPS39-207ENST00000563692 BCAMP50895 628 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 NOGQ13253 232 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 DLGAP5Q15398 846 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 SLC9C2Q5TAH2 1124 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 ZNF589Q86UQ0 364 aaPredicted RBP10.63□□□□□ -0.71
VPS39-207ENST00000563692 CDCA5Q96FF9 252 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 DENND2AQ9ULE3 1009 aa10.63□□□□□ -0.71
VPS39-207ENST00000563692 ASTN2O75129 1339 aaPredicted RBP10.62□□□□□ -0.71
VPS39-207ENST00000563692 WNT10BO00744 389 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 CA12O43570 354 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 IDH1O75874 414 aaKnown RBP10.62□□□□□ -0.71
VPS39-207ENST00000563692 CD2BP2O95400 341 aaKnown RBP10.62□□□□□ -0.71
VPS39-207ENST00000563692 HMGB1P09429 215 aaKnown RBP10.62□□□□□ -0.71
VPS39-207ENST00000563692 CASTP20810 708 aaKnown RBP10.62□□□□□ -0.71
VPS39-207ENST00000563692 ADD2P35612 726 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 FKBP1AP62942 108 aaKnown RBP10.62□□□□□ -0.71
VPS39-207ENST00000563692 FKBP1BP68106 108 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 TTLL12Q14166 644 aaPredicted RBP10.62□□□□□ -0.71
VPS39-207ENST00000563692 ANKRD1Q15327 319 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 NBPF9Q3BBW0 867 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 VPS53Q5VIR6 699 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 RGMBQ6NW40 437 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 RUFY3Q7L099 469 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 APOBEC3FQ8IUX4 373 aaKnown RBP10.62□□□□□ -0.71
VPS39-207ENST00000563692 RASEFQ8IZ41 740 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 CCDC102AQ96A19 550 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 ZSCAN31Q96LW9 406 aaPredicted RBP10.62□□□□□ -0.71
VPS39-207ENST00000563692 JAKMIP1Q96N16 626 aaKnown RBP10.62□□□□□ -0.71
VPS39-207ENST00000563692 SEC62Q99442 399 aaKnown RBP10.62□□□□□ -0.71
VPS39-207ENST00000563692 ZSWIM6Q9HCJ5 1215 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 PRDM10Q9NQV6 1147 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 PDRG1Q9NUG6 133 aa10.62□□□□□ -0.71
VPS39-207ENST00000563692 TRPM7Q96QT4 1865 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 PCNTO95613 3336 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 F8W031 263 aaPredicted RBP10.61□□□□□ -0.71
VPS39-207ENST00000563692 ZBTB22O15209 634 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 IGSF3O75054 1194 aa10.61□□□□□ -0.71
VPS39-207ENST00000563692 AOC2O75106 756 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms