RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ESR2Q92731 530 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 RNF41Q9H4P4 317 aaPredicted RBP6.38□□□□□ -1.39
VPS13C-209ENST00000560637 TFIP11Q9UBB9 837 aaKnown RBP6.38□□□□□ -1.39
VPS13C-209ENST00000560637 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.38□□□□□ -1.39
VPS13C-209ENST00000560637 M0R2C6 588 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 FGAP02671 866 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 CYP2D6P10635 497 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 SOGA3Q5TF21 947 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 CIAPIN1Q6FI81 312 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 OTUD7BQ6GQQ9 843 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 CPXCR1Q8N123 301 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 SLC44A5Q8NCS7 719 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 PEAK1Q9H792 1746 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 ABCA3Q99758 1704 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 PES1O00541 588 aaKnown RBP6.38□□□□□ -1.39
VPS13C-209ENST00000560637 MCM5P33992 734 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 METAP2P50579 478 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS13C-209ENST00000560637 DHX8Q14562 1220 aaKnown RBP6.38□□□□□ -1.39
VPS13C-209ENST00000560637 SAMD7Q7Z3H4 446 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 CATIPQ7Z7H3 387 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 TBC1D32Q96NH3 1257 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 PANK2Q9BZ23 570 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 ZNF287Q9HBT7 754 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 POLLQ9UGP5 575 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 SLC27A2O14975 620 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 PRPF40AO75400 957 aaKnown RBP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 PTMAP06454 111 aaKnown RBP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 GOLGA8HP0CJ92 632 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 HSPD1P10809 573 aaKnown RBP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 AK2P54819 239 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 TFAP4Q01664 338 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 RASEFQ8IZ41 740 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 NLGN2Q8NFZ4 835 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 NOC3LQ8WTT2 800 aaKnown RBP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 USP26Q9BXU7 913 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 GPHNQ9NQX3 736 aaPredicted RBP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 HOMER2Q9NSB8 354 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 CHMP5Q9NZZ3 219 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 RGPD1P0DJD0 1748 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 USP17L3A6NCW0 530 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 USP17L4A6NCW7 530 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 MAST3O60307 1309 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 LRP5O75197 1615 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 CIAO1O76071 339 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 MYCP01106 439 aaPredicted RBP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 SRGNP10124 158 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 ADCK5Q3MIX3 580 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 L1TD1Q5T7N2 865 aaKnown RBP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 USP17L1Q7RTZ2 530 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 CCDC84Q86UT8 332 aaPredicted RBP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 LRRC47Q8N1G4 583 aaKnown RBP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 PI4K2BQ8TCG2 481 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 CSRNP1Q96S65 589 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 ORC3Q9UBD5 711 aaPredicted RBP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 PLCH1Q4KWH8 1693 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 ABCC6O95255 1503 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 CDHR2Q9BYE9 1310 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 SSBP05455 408 aaKnown RBP eCLIP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 XBP1P17861 261 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 SF3B3Q15393 1217 aaKnown RBP6.37□□□□□ -1.39
VPS13C-209ENST00000560637 SULF1Q8IWU6 871 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 IFNL3Q8IZI9 196 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 TBC1D22AQ8WUA7 517 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 TMX3Q96JJ7 454 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 LIMCH1Q9UPQ0 1083 aa6.37□□□□□ -1.39
VPS13C-209ENST00000560637 ZBTB43O43298 467 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 NF2P35240 595 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 RFX5P48382 616 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-209ENST00000560637 ANKRD1Q15327 319 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 RABL6Q3YEC7 729 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-209ENST00000560637 CFAP100Q494V2 611 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 FAM173BQ6P4H8 233 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 TTC6Q86TZ1 520 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 PHKBQ93100 1093 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 CAMKK2Q96RR4 588 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 CLIP2Q9UDT6 1046 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 SEC63Q9UGP8 760 aaKnown RBP6.36□□□□□ -1.39
VPS13C-209ENST00000560637 ATP6V0A2Q9Y487 856 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 SLIT3O75094 1523 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 TRPM3Q9HCF6 1732 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-209ENST00000560637 CSF1RP07333 972 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 PLCG2P16885 1265 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 IARSP41252 1262 aaKnown RBP6.36□□□□□ -1.39
VPS13C-209ENST00000560637 SP4Q02446 784 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 STK38Q15208 465 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 HEATR3Q7Z4Q2 680 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 CLEC10AQ8IUN9 316 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 RTKN2Q8IZC4 609 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 SH3RF3Q8TEJ3 882 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-209ENST00000560637 ZHX3Q9H4I2 956 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 BRMS1Q9HCU9 246 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 SNX14Q9Y5W7 946 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 ALS2Q96Q42 1657 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 SLURP2P0DP57 97 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 GJB2P29033 226 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 ZNF76P36508 570 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 ME1P48163 572 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 NLRP5P59047 1200 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 MTX1Q13505 466 aa6.36□□□□□ -1.39
VPS13C-209ENST00000560637 C8orf76Q96K31 380 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms