RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TAF1DQ9H5J8 278 aaPredicted RBP11.12□□□□□ -0.63
LDLR-210ENST00000559340 HELLSQ9NRZ9 838 aa11.12□□□□□ -0.63
LDLR-210ENST00000559340 GAKO14976 1311 aa11.11□□□□□ -0.63
LDLR-210ENST00000559340 ZNF532Q9HCE3 1301 aa11.11□□□□□ -0.63
LDLR-210ENST00000559340 MAGEB6P1A0A0J9YX57 407 aa11.11□□□□□ -0.63
LDLR-210ENST00000559340 DIXDC1Q155Q3 683 aa11.11□□□□□ -0.63
LDLR-210ENST00000559340 GRIK5Q16478 980 aa11.11□□□□□ -0.63
LDLR-210ENST00000559340 TBC1D10BQ4KMP7 808 aaPredicted RBP11.11□□□□□ -0.63
LDLR-210ENST00000559340 SAMD7Q7Z3H4 446 aa11.11□□□□□ -0.63
LDLR-210ENST00000559340 DDRGK1Q96HY6 314 aa11.11□□□□□ -0.63
LDLR-210ENST00000559340 DAGLAQ9Y4D2 1042 aa11.11□□□□□ -0.63
LDLR-210ENST00000559340 MYH1P12882 1939 aa11.11□□□□□ -0.63
LDLR-210ENST00000559340 CDK5RAP2Q96SN8 1893 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 SPDYE2BA6NHP3 402 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 SPDYE6P0CI01 402 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 GSPT1P15170 499 aaKnown RBP11.1□□□□□ -0.63
LDLR-210ENST00000559340 GNAT2P19087 354 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 BTDP43251 543 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 TNNI2P48788 182 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 TNFAIP1Q13829 316 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 MCMDC2Q4G0Z9 681 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 FKBP1CQ5VVH2 108 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 APOBEC3FQ8IUX4 373 aaKnown RBP11.1□□□□□ -0.63
LDLR-210ENST00000559340 AIDAQ96BJ3 306 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 DCPSQ96C86 337 aaKnown RBP11.1□□□□□ -0.63
LDLR-210ENST00000559340 CRNKL1Q9BZJ0 848 aaKnown RBP11.1□□□□□ -0.63
LDLR-210ENST00000559340 USP40Q9NVE5 1235 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 CLEC11AQ9Y240 323 aa11.1□□□□□ -0.63
LDLR-210ENST00000559340 TCRBV5S4A2TA0A5A2 114 aa11.09□□□□□ -0.63
LDLR-210ENST00000559340 WNT10BO00744 389 aa11.09□□□□□ -0.63
LDLR-210ENST00000559340 CDC45O75419 566 aa11.09□□□□□ -0.63
LDLR-210ENST00000559340 HTRA3P83110 453 aa11.09□□□□□ -0.63
LDLR-210ENST00000559340 EAPPQ56P03 285 aaPredicted RBP11.09□□□□□ -0.63
LDLR-210ENST00000559340 ZMYM1Q5SVZ6 1142 aa11.09□□□□□ -0.63
LDLR-210ENST00000559340 APOBEC3HQ6NTF7 200 aaKnown RBP11.09□□□□□ -0.63
LDLR-210ENST00000559340 ZBED3Q96IU2 234 aaPredicted RBP11.09□□□□□ -0.63
LDLR-210ENST00000559340 PRMT6Q96LA8 375 aaPredicted RBP11.09□□□□□ -0.63
LDLR-210ENST00000559340 AATFQ9NY61 560 aaKnown RBP eCLIP11.09□□□□□ -0.63
LDLR-210ENST00000559340 FOCADQ5VW36 1801 aa11.09□□□□□ -0.63
LDLR-210ENST00000559340 RAD50Q92878 1312 aa11.09□□□□□ -0.63
LDLR-210ENST00000559340 PITPNM2Q9BZ72 1349 aa11.09□□□□□ -0.63
LDLR-210ENST00000559340 RPAP1Q9BWH6 1393 aaPredicted RBP11.08□□□□□ -0.64
LDLR-210ENST00000559340 POTECB2RU33 542 aa11.08□□□□□ -0.64
LDLR-210ENST00000559340 NPM3O75607 178 aaKnown RBP11.08□□□□□ -0.64
LDLR-210ENST00000559340 CHMLP26374 656 aa11.08□□□□□ -0.64
LDLR-210ENST00000559340 SPDYE2Q495Y8 402 aa11.08□□□□□ -0.64
LDLR-210ENST00000559340 CDC42EP5Q6NZY7 148 aa11.08□□□□□ -0.64
LDLR-210ENST00000559340 LDHDQ86WU2 507 aa11.08□□□□□ -0.64
LDLR-210ENST00000559340 SKAP1Q86WV1 359 aa11.08□□□□□ -0.64
LDLR-210ENST00000559340 AMOTL1Q8IY63 956 aa11.08□□□□□ -0.64
LDLR-210ENST00000559340 TEX11Q8IYF3 940 aa11.08□□□□□ -0.64
LDLR-210ENST00000559340 NACAP1Q9BZK3 213 aa11.08□□□□□ -0.64
LDLR-210ENST00000559340 TDRD3Q9H7E2 651 aaKnown RBP11.08□□□□□ -0.64
LDLR-210ENST00000559340 ZNF70Q9UC06 446 aaPredicted RBP11.08□□□□□ -0.64
LDLR-210ENST00000559340 BAZ2AQ9UIF9 1905 aaKnown RBP11.07□□□□□ -0.64
LDLR-210ENST00000559340 SHTN1A0MZ66 631 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 ENTPD3O75355 529 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 MBD4O95243 580 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 USP5P45974 858 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 NMIQ13287 307 aaPredicted RBP11.07□□□□□ -0.64
LDLR-210ENST00000559340 NBPF9Q3BBW0 867 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 CWC27Q6UX04 472 aaKnown RBP11.07□□□□□ -0.64
LDLR-210ENST00000559340 KIAA1211Q6ZU35 1233 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 FAM83AQ86UY5 434 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 SULF1Q8IWU6 871 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 MIGA1Q8NAN2 632 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 TRPM4Q8TD43 1214 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 ZNF384Q8TF68 577 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 HOOK2Q96ED9 719 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 IDI2Q9BXS1 227 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 VEZTQ9HBM0 779 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 ATP8A2Q9NTI2 1148 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 PGAP2Q9UHJ9 254 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 PPP2R3BQ9Y5P8 575 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 ADAMTSL1Q8N6G6 1762 aa11.07□□□□□ -0.64
LDLR-210ENST00000559340 GPAA1O43292 621 aa11.06□□□□□ -0.64
LDLR-210ENST00000559340 HIRAP54198 1017 aaPredicted RBP11.06□□□□□ -0.64
LDLR-210ENST00000559340 DYNLL1P63167 89 aaKnown RBP11.06□□□□□ -0.64
LDLR-210ENST00000559340 GIMAP6Q6P9H5 292 aa11.06□□□□□ -0.64
LDLR-210ENST00000559340 CDC37L1Q7L3B6 337 aa11.06□□□□□ -0.64
LDLR-210ENST00000559340 OSBP2Q969R2 916 aa11.06□□□□□ -0.64
LDLR-210ENST00000559340 STRBPQ96SI9 672 aaKnown RBP11.06□□□□□ -0.64
LDLR-210ENST00000559340 RIOK1Q9BRS2 568 aaKnown RBP11.06□□□□□ -0.64
LDLR-210ENST00000559340 PUS7LQ9H0K6 701 aaKnown RBP11.06□□□□□ -0.64
LDLR-210ENST00000559340 SLC4A4Q9Y6R1 1079 aa11.06□□□□□ -0.64
LDLR-210ENST00000559340 TRPM7Q96QT4 1865 aa11.06□□□□□ -0.64
LDLR-210ENST00000559340 MYH8P13535 1937 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 CLRN2A0PK11 232 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 PATL2C9JE40 543 aaKnown RBP11.05□□□□□ -0.64
LDLR-210ENST00000559340 APPP05067 770 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 RHBDL3P58872 404 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 COL13A1Q5TAT6 717 aaPredicted RBP11.05□□□□□ -0.64
LDLR-210ENST00000559340 ANGEL2Q5VTE6 544 aaKnown RBP11.05□□□□□ -0.64
LDLR-210ENST00000559340 CHADLQ6NUI6 762 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 ADGRA1Q86SQ6 560 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 NAV1Q8NEY1 1877 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 SH3RF3Q8TEJ3 882 aaPredicted RBP11.05□□□□□ -0.64
LDLR-210ENST00000559340 TGFBRAP1Q8WUH2 860 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 FAM151AQ8WW52 585 aa11.05□□□□□ -0.64
LDLR-210ENST00000559340 FAM227BQ96M60 508 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms