RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 RC3H1Q5TC82 1133 aaKnown RBP9.59□□□□□ -0.87
USP3-211ENST00000559257 GIMAP6Q6P9H5 292 aa9.59□□□□□ -0.87
USP3-211ENST00000559257 LUZP1Q86V48 1076 aa9.59□□□□□ -0.87
USP3-211ENST00000559257 LCA5Q86VQ0 697 aa9.59□□□□□ -0.87
USP3-211ENST00000559257 KIRREL3Q8IZU9 778 aa9.59□□□□□ -0.87
USP3-211ENST00000559257 ACTR5Q9H9F9 607 aaPredicted RBP9.59□□□□□ -0.87
USP3-211ENST00000559257 SLC40A1Q9NP59 571 aa9.59□□□□□ -0.87
USP3-211ENST00000559257 HOOK1Q9UJC3 728 aaKnown RBP9.59□□□□□ -0.87
USP3-211ENST00000559257 CLTCL1P53675 1640 aa9.59□□□□□ -0.87
USP3-211ENST00000559257 PER1O15534 1290 aaPredicted RBP9.58□□□□□ -0.88
USP3-211ENST00000559257 CDC45O75419 566 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 PHEXP78562 749 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 BLMHQ13867 455 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 MVPQ14764 893 aaKnown RBP9.58□□□□□ -0.88
USP3-211ENST00000559257 NACC2Q96BF6 587 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 SENP2Q9HC62 589 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 PUF60Q9UHX1 559 aaKnown RBP9.58□□□□□ -0.88
USP3-211ENST00000559257 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP3-211ENST00000559257 N6AMT1Q9Y5N5 214 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 PPIP5K1Q6PFW1 1433 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 TMEM232C9JQI7 657 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 HMMRO75330 724 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 PRPF6O94906 941 aaKnown RBP9.58□□□□□ -0.88
USP3-211ENST00000559257 LUC7L3O95232 432 aaKnown RBP9.58□□□□□ -0.88
USP3-211ENST00000559257 LINGO3P0C6S8 592 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 MCM3P25205 808 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 CNGA1P29973 690 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 COPB2P35606 906 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 NSUN2Q08J23 767 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP3-211ENST00000559257 ENOX2Q16206 610 aaKnown RBP9.58□□□□□ -0.88
USP3-211ENST00000559257 PABPC1LQ4VXU2 614 aaKnown RBP9.58□□□□□ -0.88
USP3-211ENST00000559257 E4F1Q66K89 784 aaPredicted RBP9.58□□□□□ -0.88
USP3-211ENST00000559257 FAM228AQ86W67 206 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 SYCP3Q8IZU3 236 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 MPHOSPH8Q99549 860 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP3-211ENST00000559257 NAT10Q9H0A0 1025 aaKnown RBP9.58□□□□□ -0.88
USP3-211ENST00000559257 CBX8Q9HC52 389 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 PCDH18Q9HCL0 1135 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 IMPACTQ9P2X3 320 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 RABL2AQ9UBK7 228 aaPredicted RBP9.58□□□□□ -0.88
USP3-211ENST00000559257 TPCN1Q9ULQ1 816 aa9.58□□□□□ -0.88
USP3-211ENST00000559257 CTDP1Q9Y5B0 961 aaPredicted RBP9.58□□□□□ -0.88
USP3-211ENST00000559257 GPATCH8Q9UKJ3 1502 aaKnown RBP9.57□□□□□ -0.88
USP3-211ENST00000559257 SETD1BQ9UPS6 1966 aaKnown RBP9.57□□□□□ -0.88
USP3-211ENST00000559257 ARHGEF5Q12774 1597 aa9.57□□□□□ -0.88
USP3-211ENST00000559257 CBFA2T2O43439 604 aa9.57□□□□□ -0.88
USP3-211ENST00000559257 N4BP1O75113 896 aaKnown RBP9.57□□□□□ -0.88
USP3-211ENST00000559257 PARP1P09874 1014 aaKnown RBP9.57□□□□□ -0.88
USP3-211ENST00000559257 IRAK1P51617 712 aa9.57□□□□□ -0.88
USP3-211ENST00000559257 USP11P51784 963 aa9.57□□□□□ -0.88
USP3-211ENST00000559257 TMEM62Q0P6H9 643 aa9.57□□□□□ -0.88
USP3-211ENST00000559257 CRELD2Q6UXH1 353 aaPredicted RBP9.57□□□□□ -0.88
USP3-211ENST00000559257 PACS1Q6VY07 963 aa9.57□□□□□ -0.88
USP3-211ENST00000559257 LEO1Q8WVC0 666 aaPredicted RBP9.57□□□□□ -0.88
USP3-211ENST00000559257 MAK16Q9BXY0 300 aaKnown RBP9.57□□□□□ -0.88
USP3-211ENST00000559257 TMCO1Q9UM00 188 aa9.57□□□□□ -0.88
USP3-211ENST00000559257 TMED5Q9Y3A6 229 aa9.57□□□□□ -0.88
USP3-211ENST00000559257 PARP3Q9Y6F1 533 aa9.57□□□□□ -0.88
USP3-211ENST00000559257 CDHR2Q9BYE9 1310 aa9.57□□□□□ -0.88
USP3-211ENST00000559257 BIN1O00499 593 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 EIF3HO15372 352 aaKnown RBP eCLIP9.56□□□□□ -0.88
USP3-211ENST00000559257 RNF40O75150 1001 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 TRIM21P19474 475 aaKnown RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 HDLBPQ00341 1268 aaKnown RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 TYRO3Q06418 890 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 TBC1D10BQ4KMP7 808 aaPredicted RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 PRPF40BQ6NWY9 871 aaKnown RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 CYB5D1Q6P9G0 228 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 CLEC4GQ6UXB4 293 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 MSANTD4Q8NCY6 345 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 CCHCR1Q8TD31 782 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 OSBPL5Q9H0X9 879 aaPredicted RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 ATXN10Q9UBB4 475 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 MYO1AQ9UBC5 1043 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 DDX25Q9UHL0 483 aaKnown RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 PAIP2BQ9ULR5 123 aaKnown RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 LAMC1P11047 1609 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 EIF3FO00303 357 aaPredicted RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 PPP1R12BO60237 982 aaPredicted RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 MARCH6O60337 910 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 RPSAP08865 295 aaKnown RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 PSMC4P43686 418 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 GNAQP50148 359 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 PSME1Q06323 249 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 PPFIA1Q13136 1202 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 PEX5LQ8IYB4 626 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 TRIML1Q8N9V2 468 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 ZBTB8BQ8NAP8 495 aaPredicted RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 ANKRD24Q8TF21 1146 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 PPP2R3CQ969Q6 453 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 IWS1Q96ST2 819 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 EXOC1Q9NV70 894 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 CFDP1Q9UEE9 299 aaPredicted RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 CROTQ9UKG9 612 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 TPX2Q9ULW0 747 aaKnown RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 SUGT1Q9Y2Z0 365 aa9.56□□□□□ -0.88
USP3-211ENST00000559257 EIF4G3O43432 1585 aaKnown RBP9.56□□□□□ -0.88
USP3-211ENST00000559257 NPTXRO95502 500 aa9.55□□□□□ -0.88
USP3-211ENST00000559257 HOXD10P28358 340 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms