RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SH2B2O14492 632 aaPredicted RBP14.96□□□□□ -0.02
LDLR-207ENST00000558013 GUCY1A2P33402 732 aa14.96□□□□□ -0.02
LDLR-207ENST00000558013 HSP90AA4PQ58FG1 418 aa14.96□□□□□ -0.02
LDLR-207ENST00000558013 CEP135Q66GS9 1140 aa14.96□□□□□ -0.02
LDLR-207ENST00000558013 ANKRD7Q92527 254 aa14.96□□□□□ -0.02
LDLR-207ENST00000558013 EPB41L4AQ9HCS5 686 aaPredicted RBP14.96□□□□□ -0.02
LDLR-207ENST00000558013 FAM217BQ9NTX9 383 aaPredicted RBP14.96□□□□□ -0.02
LDLR-207ENST00000558013 YEATS4O95619 227 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 CYP19A1P11511 503 aaPredicted RBP14.95□□□□□ -0.02
LDLR-207ENST00000558013 SHC4Q6S5L8 630 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 NFXL1Q6ZNB6 911 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 ARMT1Q9H993 441 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 SEC31BQ9NQW1 1179 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 PNOCQ13519 176 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 NCAPHQ15003 741 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 TMC6Q7Z403 805 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 IGDCC4Q8TDY8 1250 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 ZSWIM5Q9P217 1185 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 IQSEC3Q9UPP2 1182 aaPredicted RBP14.95□□□□□ -0.02
LDLR-207ENST00000558013 ZNF335Q9H4Z2 1342 aaPredicted RBP14.95□□□□□ -0.02
LDLR-207ENST00000558013 TCRBV5S4A2TA0A5A2 114 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 WTIPA6NIX2 430 aaPredicted RBP14.95□□□□□ -0.02
LDLR-207ENST00000558013 ZRSR1Q15695 479 aaKnown RBP14.95□□□□□ -0.02
LDLR-207ENST00000558013 RRP12Q5JTH9 1297 aaKnown RBP14.95□□□□□ -0.02
LDLR-207ENST00000558013 MAGEB6Q8N7X4 407 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 STRBPQ96SI9 672 aaKnown RBP14.95□□□□□ -0.02
LDLR-207ENST00000558013 FBXO3Q9UK99 471 aa14.95□□□□□ -0.02
LDLR-207ENST00000558013 TOGARAM1Q9Y4F4 1720 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 SMTNL1A8MU46 457 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 FOXN1O15353 648 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 RBM6P78332 1123 aaKnown RBP14.94□□□□□ -0.02
LDLR-207ENST00000558013 GOLGA8FQ08AF8 430 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 GOLGA8DPQ0D2H9 430 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 SLC39A14Q15043 492 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 ARMCX5Q6P1M9 558 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 BRAPQ7Z569 592 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 CCDC112Q8NEF3 446 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 AIDAQ96BJ3 306 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 ZMYM6O95789 1325 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 AKAP11Q9UKA4 1901 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 MBD4O95243 580 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 RASGRF1Q13972 1273 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 NTRK3Q16288 839 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 NAT10Q9H0A0 1025 aaKnown RBP14.94□□□□□ -0.02
LDLR-207ENST00000558013 HSD3B7Q9H2F3 369 aa14.94□□□□□ -0.02
LDLR-207ENST00000558013 CMA1P23946 247 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 GRIN1Q05586 938 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 GNL2Q13823 731 aaKnown RBP14.93□□□□□ -0.02
LDLR-207ENST00000558013 TMEM67Q5HYA8 995 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 TICAM2Q86XR7 235 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 DPF2Q92785 391 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 LY9Q9HBG7 655 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 PLEKHG2Q9H7P9 1386 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 NPHP1O15259 732 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 PTPN14Q15678 1187 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 FOXP4Q8IVH2 680 aaPredicted RBP14.93□□□□□ -0.02
LDLR-207ENST00000558013 SLC26A6Q9BXS9 759 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 TOMM22Q9NS69 142 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 KCNJ14Q9UNX9 436 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 SHANK3Q9BYB0 1731 aa14.93□□□□□ -0.02
LDLR-207ENST00000558013 ZBTB43O43298 467 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 IGSF3O75054 1194 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 SYKP43405 635 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 PTPAQ15257 358 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 NYAP1Q6ZVC0 841 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 DZIP3Q86Y13 1208 aaKnown RBP14.92□□□□□ -0.02
LDLR-207ENST00000558013 CCAR2Q8N163 923 aaKnown RBP14.92□□□□□ -0.02
LDLR-207ENST00000558013 MIGA1Q8NAN2 632 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 LONRF3Q496Y0 759 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 ZNF215Q9UL58 517 aaPredicted RBP14.92□□□□□ -0.02
LDLR-207ENST00000558013 PAPPAQ13219 1627 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 GOLGA8AA7E2F4 631 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 BCAMP50895 628 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 UBE3CQ15386 1083 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 E4F1Q66K89 784 aaPredicted RBP14.92□□□□□ -0.02
LDLR-207ENST00000558013 IFNL3Q8IZI9 196 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 SPATA5Q8NB90 893 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 MAP3K14Q99558 947 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 CDHR2Q9BYE9 1310 aa14.92□□□□□ -0.02
LDLR-207ENST00000558013 SPEF2Q9C093 1822 aa14.91□□□□□ -0.02
LDLR-207ENST00000558013 BTBD18B2RXH4 712 aa14.91□□□□□ -0.02
LDLR-207ENST00000558013 IFIT3O14879 490 aaKnown RBP14.91□□□□□ -0.02
LDLR-207ENST00000558013 IARSP41252 1262 aaKnown RBP14.91□□□□□ -0.02
LDLR-207ENST00000558013 NLRP12P59046 1061 aa14.91□□□□□ -0.02
LDLR-207ENST00000558013 TEX13AQ9BXU3 409 aaPredicted RBP14.91□□□□□ -0.02
LDLR-207ENST00000558013 ATP2B1P20020 1258 aa14.91□□□□□ -0.02
LDLR-207ENST00000558013 PDE8AO60658 829 aa14.9□□□□□ -0.02
LDLR-207ENST00000558013 SUSD4Q5VX71 490 aa14.9□□□□□ -0.02
LDLR-207ENST00000558013 LCORLQ8N3X6 602 aa14.9□□□□□ -0.02
LDLR-207ENST00000558013 NAPBQ9H115 298 aa14.9□□□□□ -0.02
LDLR-207ENST00000558013 ARID4AP29374 1257 aaPredicted RBP14.9□□□□□ -0.02
LDLR-207ENST00000558013 TTF1Q15361 905 aaPredicted RBP14.9□□□□□ -0.02
LDLR-207ENST00000558013 LRRN4CLQ8ND94 238 aa14.9□□□□□ -0.02
LDLR-207ENST00000558013 GSG1L2A8MUP6 293 aa14.9□□□□□ -0.02
LDLR-207ENST00000558013 FGFR2P21802 821 aa14.9□□□□□ -0.02
LDLR-207ENST00000558013 BMP6P22004 513 aa14.9□□□□□ -0.02
LDLR-207ENST00000558013 PUM3Q15397 648 aaKnown RBP14.9□□□□□ -0.02
LDLR-207ENST00000558013 METTL16Q86W50 562 aaKnown RBP14.9□□□□□ -0.02
LDLR-207ENST00000558013 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.9□□□□□ -0.02
LDLR-207ENST00000558013 PAXBP1Q9Y5B6 917 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms