RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 PRDX5P30044 214 aa13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 TAF1CQ15572 869 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 DIXDC1Q155Q3 683 aa13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 MIGA2Q7L4E1 593 aa13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 ERO1BQ86YB8 467 aa13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 FAM151AQ8WW52 585 aa13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 ZKSCAN4Q969J2 545 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 ZNF341Q9BYN7 854 aa13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 EFCC1Q9HA90 598 aa13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 PTPN22Q9Y2R2 807 aa13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 SNCAIPQ9Y6H5 919 aa13.76□□□□□ -0.21
CCDC88C-213ENST00000557455 SALL1Q9NSC2 1324 aa13.75□□□□□ -0.21
CCDC88C-213ENST00000557455 WDHD1O75717 1129 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-213ENST00000557455 GNAI3P08754 354 aa13.75□□□□□ -0.21
CCDC88C-213ENST00000557455 PHKA1P46020 1223 aa13.75□□□□□ -0.21
CCDC88C-213ENST00000557455 TCP10Q12799 353 aa13.75□□□□□ -0.21
CCDC88C-213ENST00000557455 INTS3Q68E01 1043 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-213ENST00000557455 CDC42EP5Q6NZY7 148 aa13.75□□□□□ -0.21
CCDC88C-213ENST00000557455 FAM43AQ8N2R8 423 aa13.75□□□□□ -0.21
CCDC88C-213ENST00000557455 ZGPATQ8N5A5 531 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-213ENST00000557455 CENPFP49454 3210 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 DOCK2Q92608 1830 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 IRF6O14896 467 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 SRGAP3O43295 1099 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 CETPP11597 493 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 ADORA1P30542 326 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 PPIL2Q13356 520 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 SNAPC2Q13487 334 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 ARHGEF6Q15052 776 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 CCDC102BQ68D86 513 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 USP40Q9NVE5 1235 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 HTTP42858 3142 aa13.74□□□□□ -0.21
CCDC88C-213ENST00000557455 RBBP6Q7Z6E9 1792 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-213ENST00000557455 IPO8O15397 1037 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-213ENST00000557455 INPP5BP32019 993 aa13.73□□□□□ -0.21
CCDC88C-213ENST00000557455 TIMM10P62072 90 aa13.73□□□□□ -0.21
CCDC88C-213ENST00000557455 PPATQ06203 517 aa13.73□□□□□ -0.21
CCDC88C-213ENST00000557455 NFIAQ12857 509 aa13.73□□□□□ -0.21
CCDC88C-213ENST00000557455 ZCCHC17Q9NP64 241 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-213ENST00000557455 AKAP2Q9Y2D5 859 aa13.73□□□□□ -0.21
CCDC88C-213ENST00000557455 ZBTB22O15209 634 aa13.72□□□□□ -0.21
CCDC88C-213ENST00000557455 CAP1Q01518 475 aa13.72□□□□□ -0.21
CCDC88C-213ENST00000557455 TFCP2Q12800 502 aa13.72□□□□□ -0.21
CCDC88C-213ENST00000557455 MTX1Q13505 466 aa13.72□□□□□ -0.21
CCDC88C-213ENST00000557455 FRAT1Q92837 279 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-213ENST00000557455 FAM198AQ9UFP1 575 aa13.72□□□□□ -0.21
CCDC88C-213ENST00000557455 ABCF2Q9UG63 623 aa13.72□□□□□ -0.21
CCDC88C-213ENST00000557455 A0A1B0GUL7 405 aa13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 BTBD19C9JJ37 291 aa13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 TLR2O60603 784 aa13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 SLC34A2O95436 690 aa13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 TRIM27P14373 513 aa13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 RASGRF1Q13972 1273 aa13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 PRPF38BQ5VTL8 546 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 SPTY2D1Q68D10 685 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 DZIP1Q86YF9 867 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 SLF2Q8IX21 1173 aa13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 XAGE2Q96GT9 111 aa13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 ZNF112Q9UJU3 913 aa13.71□□□□□ -0.21
CCDC88C-213ENST00000557455 ZSWIM8A7E2V4 1837 aa13.71□□□□□ -0.22
CCDC88C-213ENST00000557455 GAKO14976 1311 aa13.7□□□□□ -0.22
CCDC88C-213ENST00000557455 PDS5AQ29RF7 1337 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-213ENST00000557455 BCAR3O75815 825 aa13.7□□□□□ -0.22
CCDC88C-213ENST00000557455 GNAI2P04899 355 aa13.7□□□□□ -0.22
CCDC88C-213ENST00000557455 MVPQ14764 893 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-213ENST00000557455 KIF22Q14807 665 aa13.7□□□□□ -0.22
CCDC88C-213ENST00000557455 ATF7IPQ6VMQ6 1270 aa13.7□□□□□ -0.22
CCDC88C-213ENST00000557455 ZFPM1Q8IX07 1006 aa13.7□□□□□ -0.22
CCDC88C-213ENST00000557455 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-213ENST00000557455 ARMC5Q96C12 935 aa13.7□□□□□ -0.22
CCDC88C-213ENST00000557455 NEUROD6Q96NK8 337 aa13.7□□□□□ -0.22
CCDC88C-213ENST00000557455 POTEFA5A3E0 1075 aa13.69□□□□□ -0.22
CCDC88C-213ENST00000557455 ENTPD3O75355 529 aa13.69□□□□□ -0.22
CCDC88C-213ENST00000557455 RGS3P49796 1198 aa13.69□□□□□ -0.22
CCDC88C-213ENST00000557455 NOL9Q5SY16 702 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-213ENST00000557455 CLUAP1Q96AJ1 413 aa13.69□□□□□ -0.22
CCDC88C-213ENST00000557455 IDI2Q9BXS1 227 aa13.69□□□□□ -0.22
CCDC88C-213ENST00000557455 KCNH4Q9UQ05 1017 aa13.69□□□□□ -0.22
CCDC88C-213ENST00000557455 TNNQ9UQP3 1299 aa13.69□□□□□ -0.22
CCDC88C-213ENST00000557455 KIAA0100Q14667 2235 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-213ENST00000557455 BRCA2P51587 3418 aa13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 LACTBP83111 547 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 G3BP1Q13283 466 aaKnown RBP eCLIP13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 SLC9C1Q4G0N8 1177 aa13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 GORABQ5T7V8 394 aa13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 ERICH6Q7L0X2 663 aa13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 ANKRD23Q86SG2 305 aa13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 NBPF11Q86T75 865 aa13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 ZSCAN29Q8IWY8 852 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 FAM163AQ96GL9 167 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 TMEM106CQ9BVX2 250 aa13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 PTCH2Q9Y6C5 1203 aa13.68□□□□□ -0.22
CCDC88C-213ENST00000557455 MROH7-TTC4A0A0A0MT08 1334 aa13.67□□□□□ -0.22
CCDC88C-213ENST00000557455 PNMA6EA0A0J9YXQ4 647 aa13.67□□□□□ -0.22
CCDC88C-213ENST00000557455 PDHXO00330 501 aa13.67□□□□□ -0.22
CCDC88C-213ENST00000557455 BTDP43251 543 aa13.67□□□□□ -0.22
CCDC88C-213ENST00000557455 MECOMQ03112 1051 aa13.67□□□□□ -0.22
CCDC88C-213ENST00000557455 PICALMQ13492 652 aa13.67□□□□□ -0.22
CCDC88C-213ENST00000557455 ARHGAP39Q9C0H5 1083 aa13.67□□□□□ -0.22
CCDC88C-213ENST00000557455 PICK1Q9NRD5 415 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms