RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 PI16Q6UXB8 463 aa13.58□□□□□ -0.24
SYNE2-227ENST00000557307 ZFPM1Q8IX07 1006 aa13.58□□□□□ -0.24
SYNE2-227ENST00000557307 ZNF384Q8TF68 577 aa13.58□□□□□ -0.24
SYNE2-227ENST00000557307 BRI3BPQ8WY22 251 aa13.58□□□□□ -0.24
SYNE2-227ENST00000557307 ZKSCAN4Q969J2 545 aaPredicted RBP13.58□□□□□ -0.24
SYNE2-227ENST00000557307 C1orf115Q9H7X2 142 aa13.58□□□□□ -0.24
SYNE2-227ENST00000557307 FAM198AQ9UFP1 575 aa13.58□□□□□ -0.24
SYNE2-227ENST00000557307 FBXO3Q9UK99 471 aa13.58□□□□□ -0.24
SYNE2-227ENST00000557307 RPAP1Q9BWH6 1393 aaPredicted RBP13.58□□□□□ -0.24
SYNE2-227ENST00000557307 A0A1B0GUL7 405 aa13.57□□□□□ -0.24
SYNE2-227ENST00000557307 RLBP1P12271 317 aa13.57□□□□□ -0.24
SYNE2-227ENST00000557307 TCP10Q12799 353 aa13.57□□□□□ -0.24
SYNE2-227ENST00000557307 DIEXFQ68CQ4 756 aaKnown RBP13.57□□□□□ -0.24
SYNE2-227ENST00000557307 WDR66Q8TBY9 1149 aa13.57□□□□□ -0.24
SYNE2-227ENST00000557307 OTUD5Q96G74 571 aa13.57□□□□□ -0.24
SYNE2-227ENST00000557307 XAGE2Q96GT9 111 aa13.57□□□□□ -0.24
SYNE2-227ENST00000557307 MAST3O60307 1309 aa13.57□□□□□ -0.24
SYNE2-227ENST00000557307 SALL1Q9NSC2 1324 aa13.57□□□□□ -0.24
SYNE2-227ENST00000557307 ATRNL1Q5VV63 1379 aa13.57□□□□□ -0.24
SYNE2-227ENST00000557307 TESPA1A2RU30 521 aaPredicted RBP13.56□□□□□ -0.24
SYNE2-227ENST00000557307 FKTNO75072 461 aa13.56□□□□□ -0.24
SYNE2-227ENST00000557307 GNAI3P08754 354 aa13.56□□□□□ -0.24
SYNE2-227ENST00000557307 INPP5BP32019 993 aa13.56□□□□□ -0.24
SYNE2-227ENST00000557307 TNNI2P48788 182 aa13.56□□□□□ -0.24
SYNE2-227ENST00000557307 MAP3K9P80192 1104 aa13.56□□□□□ -0.24
SYNE2-227ENST00000557307 MIGA2Q7L4E1 593 aa13.56□□□□□ -0.24
SYNE2-227ENST00000557307 FAM83AQ86UY5 434 aa13.56□□□□□ -0.24
SYNE2-227ENST00000557307 FAM43AQ8N2R8 423 aa13.56□□□□□ -0.24
SYNE2-227ENST00000557307 WRNIP1Q96S55 665 aa13.56□□□□□ -0.24
SYNE2-227ENST00000557307 MRIQ9BWK5 157 aa13.56□□□□□ -0.24
SYNE2-227ENST00000557307 SUGT1Q9Y2Z0 365 aa13.56□□□□□ -0.24
SYNE2-227ENST00000557307 LDHBP07195 334 aaKnown RBP13.55□□□□□ -0.24
SYNE2-227ENST00000557307 NOM1Q5C9Z4 860 aaKnown RBP13.55□□□□□ -0.24
SYNE2-227ENST00000557307 CD99L2Q8TCZ2 262 aa13.55□□□□□ -0.24
SYNE2-227ENST00000557307 GAKO14976 1311 aa13.55□□□□□ -0.24
SYNE2-227ENST00000557307 MGAMO43451 1857 aa13.55□□□□□ -0.24
SYNE2-227ENST00000557307 SPDYE5A6NIY4 337 aa13.54□□□□□ -0.24
SYNE2-227ENST00000557307 UNCXA6NJT0 531 aa13.54□□□□□ -0.24
SYNE2-227ENST00000557307 GNAI2P04899 355 aa13.54□□□□□ -0.24
SYNE2-227ENST00000557307 MLLT1Q03111 559 aaPredicted RBP13.54□□□□□ -0.24
SYNE2-227ENST00000557307 SH3BP5LQ7L8J4 393 aa13.54□□□□□ -0.24
SYNE2-227ENST00000557307 FAM151AQ8WW52 585 aa13.54□□□□□ -0.24
SYNE2-227ENST00000557307 DDX4Q9NQI0 724 aaKnown RBP13.54□□□□□ -0.24
SYNE2-227ENST00000557307 USP40Q9NVE5 1235 aa13.54□□□□□ -0.24
SYNE2-227ENST00000557307 TMOD2Q9NZR1 351 aa13.54□□□□□ -0.24
SYNE2-227ENST00000557307 DENND2AQ9ULE3 1009 aa13.54□□□□□ -0.24
SYNE2-227ENST00000557307 MKI67P46013 3256 aaKnown RBP13.53□□□□□ -0.24
SYNE2-227ENST00000557307 CCL15-CCL14A0A0B4J2E2 113 aa13.53□□□□□ -0.24
SYNE2-227ENST00000557307 IRF6O14896 467 aa13.53□□□□□ -0.24
SYNE2-227ENST00000557307 CCL15Q16663 113 aa13.53□□□□□ -0.24
SYNE2-227ENST00000557307 FKBP1CQ5VVH2 108 aa13.53□□□□□ -0.24
SYNE2-227ENST00000557307 ZKSCAN2Q63HK3 967 aa13.53□□□□□ -0.24
SYNE2-227ENST00000557307 TBC1D9Q6ZT07 1266 aa13.53□□□□□ -0.24
SYNE2-227ENST00000557307 OTOP1Q7RTM1 612 aa13.53□□□□□ -0.24
SYNE2-227ENST00000557307 HMG20BQ9P0W2 317 aa13.53□□□□□ -0.24
SYNE2-227ENST00000557307 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.53□□□□□ -0.24
SYNE2-227ENST00000557307 ABCF2Q9UG63 623 aa13.53□□□□□ -0.24
SYNE2-227ENST00000557307 SEMA3EO15041 775 aa13.52□□□□□ -0.25
SYNE2-227ENST00000557307 IPO8O15397 1037 aaKnown RBP13.52□□□□□ -0.25
SYNE2-227ENST00000557307 ALDH1A1P00352 501 aa13.52□□□□□ -0.25
SYNE2-227ENST00000557307 RGS3P49796 1198 aa13.52□□□□□ -0.25
SYNE2-227ENST00000557307 INHBEP58166 350 aa13.52□□□□□ -0.25
SYNE2-227ENST00000557307 POLA2Q14181 598 aa13.52□□□□□ -0.25
SYNE2-227ENST00000557307 FBXO46Q6PJ61 603 aaPredicted RBP13.52□□□□□ -0.25
SYNE2-227ENST00000557307 NEUROD6Q96NK8 337 aa13.52□□□□□ -0.25
SYNE2-227ENST00000557307 GNL3LQ9NVN8 582 aaKnown RBP13.52□□□□□ -0.25
SYNE2-227ENST00000557307 TRIM17Q9Y577 477 aa13.52□□□□□ -0.25
SYNE2-227ENST00000557307 CSADQ9Y600 493 aa13.52□□□□□ -0.25
SYNE2-227ENST00000557307 LOC285556D6RIA3 1793 aa13.51□□□□□ -0.25
SYNE2-227ENST00000557307 MROH7-TTC4A0A0A0MT08 1334 aa13.51□□□□□ -0.25
SYNE2-227ENST00000557307 PDS5AQ29RF7 1337 aaKnown RBP13.51□□□□□ -0.25
SYNE2-227ENST00000557307 DDTLA6NHG4 134 aaPredicted RBP13.51□□□□□ -0.25
SYNE2-227ENST00000557307 ZBTB22O15209 634 aa13.51□□□□□ -0.25
SYNE2-227ENST00000557307 WDHD1O75717 1129 aaPredicted RBP13.51□□□□□ -0.25
SYNE2-227ENST00000557307 MCAMP43121 646 aa13.51□□□□□ -0.25
SYNE2-227ENST00000557307 BTDP43251 543 aa13.51□□□□□ -0.25
SYNE2-227ENST00000557307 MECOMQ03112 1051 aa13.51□□□□□ -0.25
SYNE2-227ENST00000557307 MOGSQ13724 837 aa13.51□□□□□ -0.25
SYNE2-227ENST00000557307 ZNF341Q9BYN7 854 aa13.51□□□□□ -0.25
SYNE2-227ENST00000557307 TLR7Q9NYK1 1049 aaKnown RBP13.51□□□□□ -0.25
SYNE2-227ENST00000557307 ZNF112Q9UJU3 913 aa13.51□□□□□ -0.25
SYNE2-227ENST00000557307 ZBED9Q6R2W3 1325 aa13.5□□□□□ -0.25
SYNE2-227ENST00000557307 BTBD19C9JJ37 291 aa13.5□□□□□ -0.25
SYNE2-227ENST00000557307 ECM2O94769 699 aaPredicted RBP13.5□□□□□ -0.25
SYNE2-227ENST00000557307 ARID4AP29374 1257 aaPredicted RBP13.5□□□□□ -0.25
SYNE2-227ENST00000557307 RHBDL3P58872 404 aa13.5□□□□□ -0.25
SYNE2-227ENST00000557307 TAF1CQ15572 869 aaPredicted RBP13.5□□□□□ -0.25
SYNE2-227ENST00000557307 CCDC84Q86UT8 332 aaPredicted RBP13.5□□□□□ -0.25
SYNE2-227ENST00000557307 ERO1BQ86YB8 467 aa13.5□□□□□ -0.25
SYNE2-227ENST00000557307 DZIP1Q86YF9 867 aaKnown RBP13.5□□□□□ -0.25
SYNE2-227ENST00000557307 PANK1Q8TE04 598 aa13.5□□□□□ -0.25
SYNE2-227ENST00000557307 SSH3Q8TE77 659 aa13.5□□□□□ -0.25
SYNE2-227ENST00000557307 DBNDD2Q9BQY9 259 aa13.5□□□□□ -0.25
SYNE2-227ENST00000557307 ARHGAP39Q9C0H5 1083 aa13.5□□□□□ -0.25
SYNE2-227ENST00000557307 MYH1P12882 1939 aa13.49□□□□□ -0.25
SYNE2-227ENST00000557307 FAM196BA6NMK8 535 aa13.49□□□□□ -0.25
SYNE2-227ENST00000557307 CTGFP29279 349 aa13.49□□□□□ -0.25
SYNE2-227ENST00000557307 GTF2A2P52657 109 aa13.49□□□□□ -0.25
SYNE2-227ENST00000557307 PPIL2Q13356 520 aa13.49□□□□□ -0.25
SYNE2-227ENST00000557307 PICALMQ13492 652 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms