RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 AAMPQ13685 434 aa9.49□□□□□ -0.89
VRK1-205ENST00000555402 PKN1Q16512 942 aa9.49□□□□□ -0.89
VRK1-205ENST00000555402 CYP27C1Q4G0S4 372 aa9.49□□□□□ -0.89
VRK1-205ENST00000555402 FAM168AQ92567 244 aa9.49□□□□□ -0.89
VRK1-205ENST00000555402 ECEL1O95672 775 aa9.48□□□□□ -0.89
VRK1-205ENST00000555402 USP5P45974 858 aa9.48□□□□□ -0.89
VRK1-205ENST00000555402 CCNJLQ8IV13 435 aa9.48□□□□□ -0.89
VRK1-205ENST00000555402 TMEM40Q8WWA1 233 aa9.48□□□□□ -0.89
VRK1-205ENST00000555402 RC3H2Q9HBD1 1191 aaKnown RBP9.48□□□□□ -0.89
VRK1-205ENST00000555402 POLR3DP05423 398 aaPredicted RBP9.47□□□□□ -0.89
VRK1-205ENST00000555402 RNASE1P07998 156 aaKnown RBP9.47□□□□□ -0.89
VRK1-205ENST00000555402 CD8BP10966 210 aa9.47□□□□□ -0.89
VRK1-205ENST00000555402 GRIA4P48058 902 aa9.47□□□□□ -0.89
VRK1-205ENST00000555402 SPRED3Q2MJR0 410 aa9.47□□□□□ -0.89
VRK1-205ENST00000555402 KSR1Q8IVT5 923 aa9.47□□□□□ -0.89
VRK1-205ENST00000555402 CORO1BQ9BR76 489 aa9.47□□□□□ -0.89
VRK1-205ENST00000555402 TRIM56Q9BRZ2 755 aaKnown RBP9.47□□□□□ -0.89
VRK1-205ENST00000555402 CARNS1A5YM72 827 aa9.46□□□□□ -0.9
VRK1-205ENST00000555402 AOC2O75106 756 aa9.46□□□□□ -0.9
VRK1-205ENST00000555402 NPR3P17342 541 aa9.46□□□□□ -0.9
VRK1-205ENST00000555402 MTMR3Q13615 1198 aa9.46□□□□□ -0.9
VRK1-205ENST00000555402 PLD6Q8N2A8 252 aaKnown RBP9.46□□□□□ -0.9
VRK1-205ENST00000555402 TCF12Q99081 682 aa9.46□□□□□ -0.9
VRK1-205ENST00000555402 MBNL3Q9NUK0 354 aaKnown RBP9.46□□□□□ -0.9
VRK1-205ENST00000555402 A0A1W2PP55 124 aa9.45□□□□□ -0.9
VRK1-205ENST00000555402 NETO1Q8TDF5 533 aa9.45□□□□□ -0.9
VRK1-205ENST00000555402 LIN7BQ9HAP6 207 aa9.45□□□□□ -0.9
VRK1-205ENST00000555402 DDX54Q8TDD1 881 aaKnown RBP9.44□□□□□ -0.9
VRK1-205ENST00000555402 ADAMTS6Q9UKP5 1117 aa9.44□□□□□ -0.9
VRK1-205ENST00000555402 VAV3Q9UKW4 847 aa9.44□□□□□ -0.9
VRK1-205ENST00000555402 PPP1R9AQ9ULJ8 1098 aa9.44□□□□□ -0.9
VRK1-205ENST00000555402 CCDC9Q9Y3X0 531 aaKnown RBP9.44□□□□□ -0.9
VRK1-205ENST00000555402 BRD1O95696 1058 aa9.43□□□□□ -0.9
VRK1-205ENST00000555402 FAM181AQ8N9Y4 354 aa9.43□□□□□ -0.9
VRK1-205ENST00000555402 PI4K2BQ8TCG2 481 aa9.43□□□□□ -0.9
VRK1-205ENST00000555402 SLC38A3Q99624 504 aa9.43□□□□□ -0.9
VRK1-205ENST00000555402 WDR18Q9BV38 432 aa9.43□□□□□ -0.9
VRK1-205ENST00000555402 SYNGAP1Q96PV0 1343 aa9.42□□□□□ -0.9
VRK1-205ENST00000555402 PATL2C9JE40 543 aaKnown RBP9.42□□□□□ -0.9
VRK1-205ENST00000555402 FZD6O60353 706 aa9.42□□□□□ -0.9
VRK1-205ENST00000555402 B3GALT4O96024 378 aa9.42□□□□□ -0.9
VRK1-205ENST00000555402 FAM87AP0C7U9 286 aa9.42□□□□□ -0.9
VRK1-205ENST00000555402 PRKCQQ04759 706 aa9.42□□□□□ -0.9
VRK1-205ENST00000555402 CDK5R2Q13319 367 aa9.42□□□□□ -0.9
VRK1-205ENST00000555402 GALNT12Q8IXK2 581 aa9.42□□□□□ -0.9
VRK1-205ENST00000555402 KRTAP4-11Q9BYQ6 195 aa9.42□□□□□ -0.9
VRK1-205ENST00000555402 FAM13AO94988 1023 aa9.41□□□□□ -0.9
VRK1-205ENST00000555402 CD96P40200 585 aa9.41□□□□□ -0.9
VRK1-205ENST00000555402 PDE3AQ14432 1141 aa9.41□□□□□ -0.9
VRK1-205ENST00000555402 GJD3Q8N144 294 aa9.41□□□□□ -0.9
VRK1-205ENST00000555402 LRRN4CLQ8ND94 238 aa9.41□□□□□ -0.9
VRK1-205ENST00000555402 GZF1Q9H116 711 aaPredicted RBP9.41□□□□□ -0.9
VRK1-205ENST00000555402 MESP2Q0VG99 397 aa9.4□□□□□ -0.9
VRK1-205ENST00000555402 TMEM88BA6NKF7 163 aa9.39□□□□□ -0.91
VRK1-205ENST00000555402 KRTAP9-7A8MTY7 169 aa9.39□□□□□ -0.91
VRK1-205ENST00000555402 KCNA1Q09470 495 aa9.39□□□□□ -0.91
VRK1-205ENST00000555402 KRTAP19-4Q3LI73 84 aa9.39□□□□□ -0.91
VRK1-205ENST00000555402 FAM84AQ96KN4 292 aa9.39□□□□□ -0.91
VRK1-205ENST00000555402 CCDC87Q9NVE4 849 aa9.39□□□□□ -0.91
VRK1-205ENST00000555402 TMPRSS2O15393 492 aa9.38□□□□□ -0.91
VRK1-205ENST00000555402 ZNF576Q9H609 170 aa9.38□□□□□ -0.91
VRK1-205ENST00000555402 CRIM1Q9NZV1 1036 aa9.38□□□□□ -0.91
VRK1-205ENST00000555402 U3KQE9 123 aa9.38□□□□□ -0.91
VRK1-205ENST00000555402 SSFA2P28290 1259 aa9.37□□□□□ -0.91
VRK1-205ENST00000555402 IFI16Q16666 785 aaKnown RBP9.37□□□□□ -0.91
VRK1-205ENST00000555402 AOC3Q16853 763 aa9.37□□□□□ -0.91
VRK1-205ENST00000555402 MKNK2Q9HBH9 465 aa9.37□□□□□ -0.91
VRK1-205ENST00000555402 LIG1P18858 919 aa9.36□□□□□ -0.91
VRK1-205ENST00000555402 AP3B2Q13367 1082 aa9.36□□□□□ -0.91
VRK1-205ENST00000555402 B4GALNT3Q6L9W6 998 aa9.36□□□□□ -0.91
VRK1-205ENST00000555402 BHLHE22Q8NFJ8 381 aaPredicted RBP9.36□□□□□ -0.91
VRK1-205ENST00000555402 WDR89Q96FK6 387 aaPredicted RBP9.36□□□□□ -0.91
VRK1-205ENST00000555402 HRASLS5Q96KN8 279 aa9.36□□□□□ -0.91
VRK1-205ENST00000555402 PIDD1Q9HB75 910 aa9.36□□□□□ -0.91
VRK1-205ENST00000555402 ITPKAP23677 461 aa9.35□□□□□ -0.91
VRK1-205ENST00000555402 TMCO4Q5TGY1 634 aa9.35□□□□□ -0.91
VRK1-205ENST00000555402 KIAA0319Q5VV43 1072 aa9.35□□□□□ -0.91
VRK1-205ENST00000555402 FANCD2OSQ96PS1 177 aa9.35□□□□□ -0.91
VRK1-205ENST00000555402 ATXN3LQ9H3M9 355 aa9.35□□□□□ -0.91
VRK1-205ENST00000555402 LRRC10BA6NIK2 292 aa9.34□□□□□ -0.91
VRK1-205ENST00000555402 OXCT1P55809 520 aa9.34□□□□□ -0.91
VRK1-205ENST00000555402 SMYD4Q8IYR2 804 aaPredicted RBP9.34□□□□□ -0.91
VRK1-205ENST00000555402 PLAGL2Q9UPG8 496 aa9.34□□□□□ -0.91
VRK1-205ENST00000555402 TMEM265A0A087WTH1 108 aa9.33□□□□□ -0.92
VRK1-205ENST00000555402 LEFTY1O75610 366 aa9.33□□□□□ -0.92
VRK1-205ENST00000555402 SLFN14P0C7P3 912 aa9.33□□□□□ -0.92
VRK1-205ENST00000555402 FKBP4Q02790 459 aaKnown RBP eCLIP9.33□□□□□ -0.92
VRK1-205ENST00000555402 SF3B2Q13435 895 aaKnown RBP9.33□□□□□ -0.92
VRK1-205ENST00000555402 SLC23A3Q6PIS1 610 aa9.33□□□□□ -0.92
VRK1-205ENST00000555402 ARHGAP27Q6ZUM4 889 aa9.33□□□□□ -0.92
VRK1-205ENST00000555402 CILP2Q8IUL8 1156 aa9.33□□□□□ -0.92
VRK1-205ENST00000555402 FLAD1Q8NFF5 587 aa9.33□□□□□ -0.92
VRK1-205ENST00000555402 CCDC86Q9H6F5 360 aaKnown RBP9.33□□□□□ -0.92
VRK1-205ENST00000555402 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.33□□□□□ -0.92
VRK1-205ENST00000555402 CEACAM5P06731 702 aa9.32□□□□□ -0.92
VRK1-205ENST00000555402 ID3Q02535 119 aa9.32□□□□□ -0.92
VRK1-205ENST00000555402 ANGEL2Q5VTE6 544 aaKnown RBP9.32□□□□□ -0.92
VRK1-205ENST00000555402 USPL1Q5W0Q7 1092 aa9.32□□□□□ -0.92
VRK1-205ENST00000555402 EHD4Q9H223 541 aa9.32□□□□□ -0.92
VRK1-205ENST00000555402 DISC1Q9NRI5 854 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms