RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SKAP1Q86WV1 359 aa13.65□□□□□ -0.22
SHMT2-216ENST00000554975 PI4KAP1Q8N8J0 262 aa13.65□□□□□ -0.22
SHMT2-216ENST00000554975 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.65□□□□□ -0.228e-7■■□□□ 11.7
SHMT2-216ENST00000554975 ANKRD2Q9GZV1 360 aa13.65□□□□□ -0.22
SHMT2-216ENST00000554975 TDRD3Q9H7E2 651 aaKnown RBP13.65□□□□□ -0.22
SHMT2-216ENST00000554975 ZNF70Q9UC06 446 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-216ENST00000554975 NEURL1BA8MQ27 555 aa13.64□□□□□ -0.23
SHMT2-216ENST00000554975 H7C1W4 665 aa13.64□□□□□ -0.23
SHMT2-216ENST00000554975 IL1R1P14778 569 aa13.64□□□□□ -0.23
SHMT2-216ENST00000554975 KCNJ4P48050 445 aa13.64□□□□□ -0.23
SHMT2-216ENST00000554975 RBM5P52756 815 aaKnown RBP eCLIP13.64□□□□□ -0.23
SHMT2-216ENST00000554975 MAP3K9P80192 1104 aa13.64□□□□□ -0.23
SHMT2-216ENST00000554975 FLIIQ13045 1269 aa13.64□□□□□ -0.23
SHMT2-216ENST00000554975 FKBP5Q13451 457 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-216ENST00000554975 TMEM39BQ9GZU3 492 aa13.64□□□□□ -0.23
SHMT2-216ENST00000554975 SNCAIPQ9Y6H5 919 aa13.64□□□□□ -0.23
SHMT2-216ENST00000554975 TCP10L2B9ZVM9 353 aa13.63□□□□□ -0.23
SHMT2-216ENST00000554975 GJA8P48165 433 aa13.63□□□□□ -0.23
SHMT2-216ENST00000554975 CASP7P55210 303 aa13.63□□□□□ -0.23
SHMT2-216ENST00000554975 C15orf52Q6ZUT6 534 aaKnown RBP13.63□□□□□ -0.23
SHMT2-216ENST00000554975 TRIM47Q96LD4 638 aa13.63□□□□□ -0.23
SHMT2-216ENST00000554975 MPHOSPH8Q99549 860 aa13.63□□□□□ -0.23
SHMT2-216ENST00000554975 SPDYE5A6NIY4 337 aa13.62□□□□□ -0.23
SHMT2-216ENST00000554975 CSF1RP07333 972 aa13.62□□□□□ -0.23
SHMT2-216ENST00000554975 CCL5P13501 91 aa13.62□□□□□ -0.23
SHMT2-216ENST00000554975 OSBPP22059 807 aa13.62□□□□□ -0.23
SHMT2-216ENST00000554975 FKBP1AP62942 108 aaKnown RBP13.62□□□□□ -0.23
SHMT2-216ENST00000554975 NUCB1Q02818 461 aa13.62□□□□□ -0.23
SHMT2-216ENST00000554975 KIF22Q14807 665 aa13.62□□□□□ -0.23
SHMT2-216ENST00000554975 C17orf99Q6UX52 265 aa13.62□□□□□ -0.23
SHMT2-216ENST00000554975 PLA2G12BQ9BX93 195 aa13.62□□□□□ -0.23
SHMT2-216ENST00000554975 SRRDQ9UH36 339 aa13.62□□□□□ -0.23
SHMT2-216ENST00000554975 CPA4Q9UI42 421 aa13.62□□□□□ -0.23
SHMT2-216ENST00000554975 AK9Q5TCS8 1911 aa13.61□□□□□ -0.23
SHMT2-216ENST00000554975 IRF6O14896 467 aa13.61□□□□□ -0.23
SHMT2-216ENST00000554975 GJB1P08034 283 aa13.61□□□□□ -0.23
SHMT2-216ENST00000554975 GRK4P32298 578 aa13.61□□□□□ -0.23
SHMT2-216ENST00000554975 PSMC4P43686 418 aa13.61□□□□□ -0.23
SHMT2-216ENST00000554975 MNX1P50219 401 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-216ENST00000554975 TBC1D32Q96NH3 1257 aa13.61□□□□□ -0.23
SHMT2-216ENST00000554975 HTATIP2Q9BUP3 242 aa13.61□□□□□ -0.23
SHMT2-216ENST00000554975 STAP2Q9UGK3 403 aa13.61□□□□□ -0.23
SHMT2-216ENST00000554975 ADGRA2Q96PE1 1338 aa13.61□□□□□ -0.23
SHMT2-216ENST00000554975 CETPP11597 493 aa13.6□□□□□ -0.23
SHMT2-216ENST00000554975 PRMT2P55345 433 aa13.6□□□□□ -0.23
SHMT2-216ENST00000554975 TNFAIP1Q13829 316 aa13.6□□□□□ -0.23
SHMT2-216ENST00000554975 GRIK5Q16478 980 aa13.6□□□□□ -0.23
SHMT2-216ENST00000554975 BMP2KLQ5H9B9 411 aa13.6□□□□□ -0.23
SHMT2-216ENST00000554975 ZNF804AQ7Z570 1209 aa13.6□□□□□ -0.23
SHMT2-216ENST00000554975 DNAAF4Q8WXU2 420 aa13.6□□□□□ -0.23
SHMT2-216ENST00000554975 ZKSCAN4Q969J2 545 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-216ENST00000554975 RNF208Q9H0X6 261 aa13.6□□□□□ -0.23
SHMT2-216ENST00000554975 RIPOR2Q9Y4F9 1068 aa13.6□□□□□ -0.23
SHMT2-216ENST00000554975 CSADQ9Y600 493 aa13.6□□□□□ -0.23
SHMT2-216ENST00000554975 PTPRFP10586 1907 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 A0A1W2PPC1 479 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 FARP2O94887 1054 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-216ENST00000554975 GNRH1P01148 92 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 CACNB3P54284 484 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 NBR1Q14596 966 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 CHD1LQ86WJ1 897 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 NKX2-3Q8TAU0 364 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 RAET1EQ8TD07 263 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 U2AF1L4Q8WU68 220 aaKnown RBP13.59□□□□□ -0.23
SHMT2-216ENST00000554975 UNC93B1Q9H1C4 597 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 TTF2Q9UNY4 1162 aaKnown RBP13.59□□□□□ -0.23
SHMT2-216ENST00000554975 NR2E3Q9Y5X4 410 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 VCANP13611 3396 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 FAM205AQ6ZU69 1335 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 MYPNQ86TC9 1320 aa13.59□□□□□ -0.23
SHMT2-216ENST00000554975 F6X3S4 739 aa13.58□□□□□ -0.24
SHMT2-216ENST00000554975 HMMRO75330 724 aa13.58□□□□□ -0.24
SHMT2-216ENST00000554975 GCKRQ14397 625 aa13.58□□□□□ -0.24
SHMT2-216ENST00000554975 MFSD14BQ5SR56 506 aa13.58□□□□□ -0.24
SHMT2-216ENST00000554975 Q7L0L9 218 aa13.58□□□□□ -0.24
SHMT2-216ENST00000554975 ERO1BQ86YB8 467 aa13.58□□□□□ -0.24
SHMT2-216ENST00000554975 WRNIP1Q96S55 665 aa13.58□□□□□ -0.24
SHMT2-216ENST00000554975 ZCCHC17Q9NP64 241 aaKnown RBP13.58□□□□□ -0.24
SHMT2-216ENST00000554975 SERPINA10Q9UK55 444 aa13.58□□□□□ -0.24
SHMT2-216ENST00000554975 ANKRD18BA2A2Z9 1011 aa13.57□□□□□ -0.24
SHMT2-216ENST00000554975 FMNL1O95466 1100 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-216ENST00000554975 CRKP46108 304 aa13.57□□□□□ -0.24
SHMT2-216ENST00000554975 PRKCZQ05513 592 aa13.57□□□□□ -0.24
SHMT2-216ENST00000554975 PPIL2Q13356 520 aa13.57□□□□□ -0.24
SHMT2-216ENST00000554975 SNAPC2Q13487 334 aa13.57□□□□□ -0.24
SHMT2-216ENST00000554975 RPAP2Q8IXW5 612 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-216ENST00000554975 ZNF594Q96JF6 807 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-216ENST00000554975 GABRQQ9UN88 632 aa13.57□□□□□ -0.24
SHMT2-216ENST00000554975 WDHD1O75717 1129 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-216ENST00000554975 MOGSQ13724 837 aa13.56□□□□□ -0.24
SHMT2-216ENST00000554975 SLC4A10Q6U841 1118 aa13.56□□□□□ -0.24
SHMT2-216ENST00000554975 LINS1Q8NG48 757 aa13.56□□□□□ -0.24
SHMT2-216ENST00000554975 TDRD7Q8NHU6 1098 aaKnown RBP13.56□□□□□ -0.24
SHMT2-216ENST00000554975 BIN2Q9UBW5 565 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-216ENST00000554975 MYH13Q9UKX3 1938 aa13.55□□□□□ -0.24
SHMT2-216ENST00000554975 PDHXO00330 501 aa13.55□□□□□ -0.24
SHMT2-216ENST00000554975 EVI5O60447 810 aa13.55□□□□□ -0.24
SHMT2-216ENST00000554975 SGPL1O95470 568 aa13.55□□□□□ -0.24
SHMT2-216ENST00000554975 INPP5BP32019 993 aa13.55□□□□□ -0.24
SHMT2-216ENST00000554975 GYG1P46976 350 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms