RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SPATA5Q8NB90 893 aa19.76■□□□□ 0.75
CCDC88C-209ENST00000554872 NEUROD6Q96NK8 337 aa19.76■□□□□ 0.75
CCDC88C-209ENST00000554872 ZBTB40Q9NUA8 1239 aa19.76■□□□□ 0.75
CCDC88C-209ENST00000554872 HMG20BQ9P0W2 317 aa19.76■□□□□ 0.75
CCDC88C-209ENST00000554872 INHBEP58166 350 aa19.75■□□□□ 0.75
CCDC88C-209ENST00000554872 NOM1Q5C9Z4 860 aaKnown RBP19.75■□□□□ 0.75
CCDC88C-209ENST00000554872 GORABQ5T7V8 394 aa19.75■□□□□ 0.75
CCDC88C-209ENST00000554872 CDC42EP5Q6NZY7 148 aa19.75■□□□□ 0.75
CCDC88C-209ENST00000554872 CDAN1Q8IWY9 1227 aa19.75■□□□□ 0.75
CCDC88C-209ENST00000554872 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.75■□□□□ 0.75
CCDC88C-209ENST00000554872 FAM151AQ8WW52 585 aa19.75■□□□□ 0.75
CCDC88C-209ENST00000554872 SLC10A4Q96EP9 437 aa19.75■□□□□ 0.75
CCDC88C-209ENST00000554872 MANSC4A6NHS7 340 aaPredicted RBP19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 CACNB3P54284 484 aa19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 OS9Q13438 667 aaPredicted RBP19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 DZIP1Q86YF9 867 aaKnown RBP19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 ERC1Q8IUD2 1116 aa19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 RPAP2Q8IXW5 612 aaPredicted RBP19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 WNK4Q96J92 1243 aa19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 CLMNQ96JQ2 1002 aa19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 IDI2Q9BXS1 227 aa19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 TSKSQ9UJT2 592 aa19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 FZD1Q9UP38 647 aa19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 MYH2Q9UKX2 1941 aa19.74■□□□□ 0.75
CCDC88C-209ENST00000554872 MAP4K4O95819 1239 aaPredicted RBP19.73■□□□□ 0.75
CCDC88C-209ENST00000554872 MCAMP43121 646 aa19.73■□□□□ 0.75
CCDC88C-209ENST00000554872 HSP90AB4PQ58FF6 505 aa19.73■□□□□ 0.75
CCDC88C-209ENST00000554872 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.73■□□□□ 0.75
CCDC88C-209ENST00000554872 MROH7-TTC4A0A0A0MT08 1334 aa19.73■□□□□ 0.75
CCDC88C-209ENST00000554872 MAST2Q6P0Q8 1798 aa19.72■□□□□ 0.75
CCDC88C-209ENST00000554872 TRPA1O75762 1119 aa19.72■□□□□ 0.75
CCDC88C-209ENST00000554872 CCDC158Q5M9N0 1113 aa19.72■□□□□ 0.75
CCDC88C-209ENST00000554872 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.72■□□□□ 0.75
CCDC88C-209ENST00000554872 ERICH6Q7L0X2 663 aa19.72■□□□□ 0.75
CCDC88C-209ENST00000554872 ABCF2Q9UG63 623 aa19.72■□□□□ 0.75
CCDC88C-209ENST00000554872 ENTPD3O75355 529 aa19.71■□□□□ 0.75
CCDC88C-209ENST00000554872 NPM3O75607 178 aaKnown RBP19.71■□□□□ 0.75
CCDC88C-209ENST00000554872 ALDH1A1P00352 501 aa19.71■□□□□ 0.75
CCDC88C-209ENST00000554872 GSTO1P78417 241 aa19.71■□□□□ 0.75
CCDC88C-209ENST00000554872 MAP3K9P80192 1104 aa19.71■□□□□ 0.75
CCDC88C-209ENST00000554872 MECOMQ03112 1051 aa19.71■□□□□ 0.75
CCDC88C-209ENST00000554872 DCAF15Q66K64 600 aa19.71■□□□□ 0.75
CCDC88C-209ENST00000554872 ZNF384Q8TF68 577 aa19.71■□□□□ 0.75
CCDC88C-209ENST00000554872 DBNDD2Q9BQY9 259 aa19.71■□□□□ 0.75
CCDC88C-209ENST00000554872 FAM198AQ9UFP1 575 aa19.71■□□□□ 0.75
CCDC88C-209ENST00000554872 COG6Q9Y2V7 657 aa19.71■□□□□ 0.75
CCDC88C-209ENST00000554872 GPR75-ASB3A0A0A6YYF3 556 aa19.7■□□□□ 0.74
CCDC88C-209ENST00000554872 TESPA1A2RU30 521 aaPredicted RBP19.7■□□□□ 0.74
CCDC88C-209ENST00000554872 HMMRO75330 724 aa19.7■□□□□ 0.74
CCDC88C-209ENST00000554872 NFIAQ12857 509 aa19.7■□□□□ 0.74
CCDC88C-209ENST00000554872 PI16Q6UXB8 463 aa19.7■□□□□ 0.74
CCDC88C-209ENST00000554872 NSUN4Q96CB9 384 aaKnown RBP19.7■□□□□ 0.74
CCDC88C-209ENST00000554872 USP40Q9NVE5 1235 aa19.7■□□□□ 0.74
CCDC88C-209ENST00000554872 DBNLQ9UJU6 430 aaKnown RBP19.7■□□□□ 0.74
CCDC88C-209ENST00000554872 ATRNL1Q5VV63 1379 aa19.7■□□□□ 0.74
CCDC88C-209ENST00000554872 COL2A1P02458 1487 aaPredicted RBP19.69■□□□□ 0.74
CCDC88C-209ENST00000554872 VGLL4Q14135 290 aa19.69■□□□□ 0.74
CCDC88C-209ENST00000554872 TTC39AQ5SRH9 613 aa19.69■□□□□ 0.74
CCDC88C-209ENST00000554872 EAF2Q96CJ1 260 aaPredicted RBP19.69■□□□□ 0.74
CCDC88C-209ENST00000554872 CSADQ9Y600 493 aa19.69■□□□□ 0.74
CCDC88C-209ENST00000554872 SPDYE5A6NIY4 337 aa19.68■□□□□ 0.74
CCDC88C-209ENST00000554872 LDHCP07864 332 aa19.68■□□□□ 0.74
CCDC88C-209ENST00000554872 GJA5P36382 358 aa19.68■□□□□ 0.74
CCDC88C-209ENST00000554872 TMED8Q6PL24 325 aaPredicted RBP19.68■□□□□ 0.74
CCDC88C-209ENST00000554872 SIRT2Q8IXJ6 389 aa19.68■□□□□ 0.74
CCDC88C-209ENST00000554872 ZNF341Q9BYN7 854 aa19.68■□□□□ 0.74
CCDC88C-209ENST00000554872 ZNF112Q9UJU3 913 aa19.68■□□□□ 0.74
CCDC88C-209ENST00000554872 CASP8AP2Q9UKL3 1982 aa19.68■□□□□ 0.74
CCDC88C-209ENST00000554872 WDHD1O75717 1129 aaPredicted RBP19.67■□□□□ 0.74
CCDC88C-209ENST00000554872 BTDP43251 543 aa19.67■□□□□ 0.74
CCDC88C-209ENST00000554872 RHBDL3P58872 404 aa19.67■□□□□ 0.74
CCDC88C-209ENST00000554872 MAP3K10Q02779 954 aa19.67■□□□□ 0.74
CCDC88C-209ENST00000554872 MKRN3Q13064 507 aaKnown RBP19.67■□□□□ 0.74
CCDC88C-209ENST00000554872 IFNL1Q8IU54 200 aa19.67■□□□□ 0.74
CCDC88C-209ENST00000554872 OPTNQ96CV9 577 aa19.67■□□□□ 0.74
CCDC88C-209ENST00000554872 KIF1BPQ96EK5 621 aa19.67■□□□□ 0.74
CCDC88C-209ENST00000554872 EXOC6BQ9Y2D4 811 aa19.67■□□□□ 0.74
CCDC88C-209ENST00000554872 DOCK2Q92608 1830 aa19.67■□□□□ 0.74
CCDC88C-209ENST00000554872 ERO1BQ86YB8 467 aa19.66■□□□□ 0.74
CCDC88C-209ENST00000554872 MS4A4AQ96JQ5 239 aa19.66■□□□□ 0.74
CCDC88C-209ENST00000554872 WRNIP1Q96S55 665 aa19.66■□□□□ 0.74
CCDC88C-209ENST00000554872 ELP3Q9H9T3 547 aa19.66■□□□□ 0.74
CCDC88C-209ENST00000554872 TLR7Q9NYK1 1049 aaKnown RBP19.66■□□□□ 0.74
CCDC88C-209ENST00000554872 SNCAIPQ9Y6H5 919 aa19.66■□□□□ 0.74
CCDC88C-209ENST00000554872 RAB11FIP3O75154 756 aa19.65■□□□□ 0.74
CCDC88C-209ENST00000554872 CYP2E1P05181 493 aaPredicted RBP19.65■□□□□ 0.74
CCDC88C-209ENST00000554872 RGS3P49796 1198 aa19.65■□□□□ 0.74
CCDC88C-209ENST00000554872 TCP10Q12799 353 aa19.65■□□□□ 0.74
CCDC88C-209ENST00000554872 NOL9Q5SY16 702 aaKnown RBP19.65■□□□□ 0.74
CCDC88C-209ENST00000554872 TBC1D9Q6ZT07 1266 aa19.65■□□□□ 0.74
CCDC88C-209ENST00000554872 RHPN1Q8TCX5 695 aa19.65■□□□□ 0.74
CCDC88C-209ENST00000554872 LRP2BPQ9P2M1 347 aa19.65■□□□□ 0.74
CCDC88C-209ENST00000554872 GTF2A2P52657 109 aa19.64■□□□□ 0.73
CCDC88C-209ENST00000554872 C20orf194Q5TEA3 1177 aa19.64■□□□□ 0.73
CCDC88C-209ENST00000554872 ABHD8Q96I13 439 aa19.64■□□□□ 0.73
CCDC88C-209ENST00000554872 RAI14Q9P0K7 980 aa19.64■□□□□ 0.73
CCDC88C-209ENST00000554872 IGF2BP3O00425 579 aaKnown RBP eCLIP19.63■□□□□ 0.73
CCDC88C-209ENST00000554872 PPP4CP60510 307 aa19.63■□□□□ 0.73
CCDC88C-209ENST00000554872 OTUD7BQ6GQQ9 843 aa19.63■□□□□ 0.73
CCDC88C-209ENST00000554872 AACSQ86V21 672 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms