RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SLC10A3P09131 477 aa14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 MAP2K2P36507 400 aa14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 KIF23Q02241 960 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 CCDC158Q5M9N0 1113 aa14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 LDLRAD1Q5T700 205 aa14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 COL13A1Q5TAT6 717 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 ERC1Q8IUD2 1116 aa14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 CHMP4BQ9H444 224 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 PIH1D3Q9NQM4 214 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 USP40Q9NVE5 1235 aa14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 THSD7BQ9C0I4 1608 aa14.22□□□□□ -0.13
CCDC88C-208ENST00000554165 MYH2Q9UKX2 1941 aa14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 GAKO14976 1311 aa14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 TCP10Q12799 353 aa14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 TNFAIP1Q13829 316 aa14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 SUPT20HL1Q3ZLR7 823 aa14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 SPTY2D1Q68D10 685 aaPredicted RBP14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 ERICH6Q7L0X2 663 aa14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 ARMC9Q7Z3E5 817 aa14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 ZGPATQ8N5A5 531 aaKnown RBP14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 CCDC102AQ96A19 550 aa14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 RAI14Q9P0K7 980 aa14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 FAM198AQ9UFP1 575 aa14.21□□□□□ -0.13
CCDC88C-208ENST00000554165 BTDP43251 543 aa14.2□□□□□ -0.14
CCDC88C-208ENST00000554165 MAP2K1Q02750 393 aaPredicted RBP14.2□□□□□ -0.14
CCDC88C-208ENST00000554165 NOGQ13253 232 aa14.2□□□□□ -0.14
CCDC88C-208ENST00000554165 HSP90AB4PQ58FF6 505 aa14.2□□□□□ -0.14
CCDC88C-208ENST00000554165 NSUN4Q96CB9 384 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-208ENST00000554165 KIF1BPQ96EK5 621 aa14.2□□□□□ -0.14
CCDC88C-208ENST00000554165 ANTXR1Q9H6X2 564 aa14.2□□□□□ -0.14
CCDC88C-208ENST00000554165 TMOD2Q9NZR1 351 aa14.2□□□□□ -0.14
CCDC88C-208ENST00000554165 LRP2BPQ9P2M1 347 aa14.2□□□□□ -0.14
CCDC88C-208ENST00000554165 MYO5AQ9Y4I1 1855 aaKnown RBP14.19□□□□□ -0.14
CCDC88C-208ENST00000554165 SLURP2P0DP57 97 aa14.19□□□□□ -0.14
CCDC88C-208ENST00000554165 TNNI2P48788 182 aa14.19□□□□□ -0.14
CCDC88C-208ENST00000554165 LBX1P52954 281 aa14.19□□□□□ -0.14
CCDC88C-208ENST00000554165 FKBP1CQ5VVH2 108 aa14.19□□□□□ -0.14
CCDC88C-208ENST00000554165 AIDAQ96BJ3 306 aa14.19□□□□□ -0.14
CCDC88C-208ENST00000554165 FAM163AQ96GL9 167 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-208ENST00000554165 ZNF512BQ96KM6 892 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-208ENST00000554165 CSRNP1Q96S65 589 aa14.19□□□□□ -0.14
CCDC88C-208ENST00000554165 DDX4Q9NQI0 724 aaKnown RBP14.19□□□□□ -0.14
CCDC88C-208ENST00000554165 MROH7-TTC4A0A0A0MT08 1334 aa14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 PPP1R12BO60237 982 aaPredicted RBP14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 RAB11FIP3O75154 756 aa14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 WDHD1O75717 1129 aaPredicted RBP14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 HSPA8P11142 646 aaKnown RBP14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 RHBDL3P58872 404 aa14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 MAP3K11Q16584 847 aa14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 MIGA2Q7L4E1 593 aa14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 SH3BP5LQ7L8J4 393 aa14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 ADGRA1Q86SQ6 560 aa14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 FAM83AQ86UY5 434 aa14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 CLASRPQ8N2M8 674 aaKnown RBP14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 FAM151AQ8WW52 585 aa14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 CNKSR2Q8WXI2 1034 aa14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 SLC10A4Q96EP9 437 aa14.18□□□□□ -0.14
CCDC88C-208ENST00000554165 GPR75-ASB3A0A0A6YYF3 556 aa14.17□□□□□ -0.14
CCDC88C-208ENST00000554165 IFIT2P09913 472 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-208ENST00000554165 GJA5P36382 358 aa14.17□□□□□ -0.14
CCDC88C-208ENST00000554165 RGS3P49796 1198 aa14.17□□□□□ -0.14
CCDC88C-208ENST00000554165 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-208ENST00000554165 EDC3Q96F86 508 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-208ENST00000554165 CTCFP49711 727 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-208ENST00000554165 PICALMQ13492 652 aa14.16□□□□□ -0.14
CCDC88C-208ENST00000554165 SPRYD7Q5W111 196 aa14.16□□□□□ -0.14
CCDC88C-208ENST00000554165 SH3RF3Q8TEJ3 882 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-208ENST00000554165 DCTPP1Q9H773 170 aa14.16□□□□□ -0.14
CCDC88C-208ENST00000554165 ELP3Q9H9T3 547 aa14.16□□□□□ -0.14
CCDC88C-208ENST00000554165 RFX7Q2KHR2 1363 aa14.16□□□□□ -0.14
CCDC88C-208ENST00000554165 IDH1O75874 414 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 IREB2P48200 963 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 GSTO1P78417 241 aa14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 VGLL4Q14135 290 aa14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 NAA16Q6N069 864 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 SLF2Q8IX21 1173 aa14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 ZKSCAN4Q969J2 545 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 BEGAINQ9BUH8 593 aa14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 IDI2Q9BXS1 227 aa14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 LRRCC1Q9C099 1032 aa14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 SUPT16HQ9Y5B9 1047 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-208ENST00000554165 OTOFQ9HC10 1997 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 AK9Q5TCS8 1911 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 DDTLA6NHG4 134 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 TRPA1O75762 1119 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 LDHCP07864 332 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 CYP7A1P22680 504 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 INPP5BP32019 993 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 DYNLL1P63167 89 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 MAP3K9P80192 1104 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 SLFNL1Q499Z3 407 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 TSHZ3Q63HK5 1081 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 WNK4Q96J92 1243 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 BOLA2Q9H3K6 86 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 RNF186Q9NXI6 227 aa14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 AATFQ9NY61 560 aaKnown RBP eCLIP14.14□□□□□ -0.15
CCDC88C-208ENST00000554165 RPAP1Q9BWH6 1393 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-208ENST00000554165 GOLIM4O00461 696 aa14.13□□□□□ -0.15
CCDC88C-208ENST00000554165 CHGBP05060 677 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms